From 26bf295307137cfcbc668211d23c580844edec14 Mon Sep 17 00:00:00 2001 From: Luis Salamanca <luis.salamanca@sdsc.ethz.ch> Date: Sat, 8 Dec 2018 19:19:01 +0000 Subject: [PATCH] renku run python src/python/run_correctxml.py data/AB//1927/02_extractedxml.tar.gz data/AB//1927/04_correctedxml.tar.gz --- ...3f5e0d515774cf49116e402bb4a763b_python.cwl | 51 +++++++++++++++++++ data/AB/1927/04_correctedxml.tar.gz | 4 +- 2 files changed, 53 insertions(+), 2 deletions(-) create mode 100644 .renku/workflow/a3f5e0d515774cf49116e402bb4a763b_python.cwl diff --git a/.renku/workflow/a3f5e0d515774cf49116e402bb4a763b_python.cwl b/.renku/workflow/a3f5e0d515774cf49116e402bb4a763b_python.cwl new file mode 100644 index 00000000..6b4554a9 --- /dev/null +++ b/.renku/workflow/a3f5e0d515774cf49116e402bb4a763b_python.cwl @@ -0,0 +1,51 @@ +arguments: [] +baseCommand: +- python +class: CommandLineTool +cwlVersion: v1.0 +hints: [] +inputs: + input_1: + default: + class: File + path: ../../src/python/run_correctxml.py + inputBinding: + position: 1 + separate: true + shellQuote: true + streamable: false + type: File + input_2: + default: + class: File + path: ../../data/AB/1927/02_extractedxml.tar.gz + inputBinding: + position: 2 + separate: true + shellQuote: true + streamable: false + type: File + input_3: + default: data/AB/1927/04_correctedxml.tar.gz + inputBinding: + position: 3 + separate: true + shellQuote: true + streamable: false + type: string +outputs: + output_0: + outputBinding: + glob: $(inputs.input_3) + streamable: false + type: File +permanentFailCodes: [] +requirements: +- class: InlineJavascriptRequirement +- class: InitialWorkDirRequirement + listing: + - entry: '$({"listing": [], "class": "Directory"})' + entryname: data/AB/1927 + writable: true +successCodes: [] +temporaryFailCodes: [] diff --git a/data/AB/1927/04_correctedxml.tar.gz b/data/AB/1927/04_correctedxml.tar.gz index aaa90e5e..f9bc7378 100644 --- a/data/AB/1927/04_correctedxml.tar.gz +++ b/data/AB/1927/04_correctedxml.tar.gz @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:080e77ac9ee553a8b4c500e1492aafa1303409541f69258dd0c1a6e9bda9fa72 -size 8795362 +oid sha256:40c16e02b44f046081eb1b87aba50e757156538fd7a7fb5651ed25ec88400eee +size 8788312 -- GitLab