diff --git a/.renku/workflow/09ea4c5c6b19416b88a73856a55c2596.cwl b/.renku/workflow/09ea4c5c6b19416b88a73856a55c2596.cwl
new file mode 100644
index 0000000000000000000000000000000000000000..9b82e33cc69b30a69024870b0228dc2b3d7719ca
--- /dev/null
+++ b/.renku/workflow/09ea4c5c6b19416b88a73856a55c2596.cwl
@@ -0,0 +1,66 @@
+class: Workflow
+cwlVersion: v1.0
+hints: []
+inputs:
+ input_1:
+ default: ts_folder
+ streamable: false
+ type: string
+ input_2:
+ default:
+ class: Directory
+ listing: []
+ path: ../../data/covid-19_jhu-csse
+ streamable: false
+ type: Directory
+ input_3:
+ default: rates_folder
+ streamable: false
+ type: string
+ input_4:
+ default:
+ class: Directory
+ listing: []
+ path: ../../data/covid-19_rates
+ streamable: false
+ type: Directory
+ input_5:
+ default: geodata_path
+ streamable: false
+ type: string
+ input_6:
+ default:
+ class: File
+ path: ../../data/geodata/geo_data.csv
+ streamable: false
+ type: File
+ input_7:
+ default:
+ class: File
+ path: ../../notebooks/Dashboard.ipynb
+ streamable: false
+ type: File
+ input_8:
+ default: runs/Dashboard.run.ipynb
+ streamable: false
+ type: string
+outputs:
+ output_0:
+ outputSource: step_1/output_0
+ streamable: false
+ type: File
+requirements: []
+steps:
+ step_1:
+ in:
+ input_1: input_1
+ input_2: input_2
+ input_3: input_3
+ input_4: input_4
+ input_5: input_5
+ input_6: input_6
+ input_7: input_7
+ input_8: input_8
+ out:
+ - output_0
+ run: 4cc7ffe9d5a045efb048ef2222a40ffa_papermill.cwl
diff --git a/runs/Dashboard.run.ipynb b/runs/Dashboard.run.ipynb
index b460da6c29360df0aa399e92c5de511d018ff1bb..1da6b73896c8e6dadff3a8da4c6ff0c862f4d64f 100644
--- a/runs/Dashboard.run.ipynb
+++ b/runs/Dashboard.run.ipynb
@@ -5,10 +5,10 @@
"execution_count": 1,
"metadata": {
"papermill": {
- "duration": 0.469742,
- "end_time": "2020-03-17T10:09:11.101438",
+ "duration": 0.458218,
+ "end_time": "2020-03-17T10:11:00.168855",
"exception": false,
- "start_time": "2020-03-17T10:09:10.631696",
+ "start_time": "2020-03-17T10:10:59.710637",
"status": "completed"
},
"tags": []
@@ -27,10 +27,10 @@
"execution_count": 2,
"metadata": {
"papermill": {
- "duration": 0.03326,
- "end_time": "2020-03-17T10:09:11.157505",
+ "duration": 0.02119,
+ "end_time": "2020-03-17T10:11:00.211155",
"exception": false,
- "start_time": "2020-03-17T10:09:11.124245",
+ "start_time": "2020-03-17T10:11:00.189965",
"status": "completed"
},
"tags": [
@@ -51,10 +51,10 @@
"execution_count": 3,
"metadata": {
"papermill": {
- "duration": 0.024282,
- "end_time": "2020-03-17T10:09:11.200233",
+ "duration": 0.021467,
+ "end_time": "2020-03-17T10:11:00.242752",
"exception": false,
- "start_time": "2020-03-17T10:09:11.175951",
+ "start_time": "2020-03-17T10:11:00.221285",
"status": "completed"
},
"tags": [
@@ -64,11 +64,11 @@
"outputs": [],
"source": [
"# Parameters\n",
- "PAPERMILL_INPUT_PATH = \"/tmp/nun9h85i/notebooks/Dashboard.ipynb\"\n",
+ "PAPERMILL_INPUT_PATH = \"/tmp/1zkv10my/notebooks/Dashboard.ipynb\"\n",
"PAPERMILL_OUTPUT_PATH = \"runs/Dashboard.run.ipynb\"\n",
- "ts_folder = \"/tmp/nun9h85i/data/covid-19_jhu-csse\"\n",
- "rates_folder = \"/tmp/nun9h85i/data/covid-19_rates\"\n",
- "geodata_path = \"/tmp/nun9h85i/data/geodata/geo_data.csv\"\n"
+ "ts_folder = \"/tmp/1zkv10my/data/covid-19_jhu-csse\"\n",
+ "rates_folder = \"/tmp/1zkv10my/data/covid-19_rates\"\n",
+ "geodata_path = \"/tmp/1zkv10my/data/geodata/geo_data.csv\"\n"
]
},
{
@@ -76,10 +76,10 @@
"execution_count": 4,
"metadata": {
"papermill": {
- "duration": 0.02124,
- "end_time": "2020-03-17T10:09:11.234670",
+ "duration": 0.020872,
+ "end_time": "2020-03-17T10:11:00.274917",
"exception": false,
- "start_time": "2020-03-17T10:09:11.213430",
+ "start_time": "2020-03-17T10:11:00.254045",
"status": "completed"
},
"tags": []
@@ -94,10 +94,10 @@
"execution_count": 5,
"metadata": {
"papermill": {
- "duration": 0.120931,
- "end_time": "2020-03-17T10:09:11.366355",
+ "duration": 0.118944,
+ "end_time": "2020-03-17T10:11:00.403357",
"exception": false,
- "start_time": "2020-03-17T10:09:11.245424",
+ "start_time": "2020-03-17T10:11:00.284413",
"status": "completed"
},
"tags": []
@@ -118,10 +118,10 @@
"cell_type": "markdown",
"metadata": {
"papermill": {
- "duration": 0.010842,
- "end_time": "2020-03-17T10:09:11.397871",
+ "duration": 0.010293,
+ "end_time": "2020-03-17T10:11:00.431297",
"exception": false,
- "start_time": "2020-03-17T10:09:11.387029",
+ "start_time": "2020-03-17T10:11:00.421004",
"status": "completed"
},
"tags": []
@@ -139,10 +139,10 @@
"execution_count": 6,
"metadata": {
"papermill": {
- "duration": 0.032679,
- "end_time": "2020-03-17T10:09:11.438983",
+ "duration": 0.04488,
+ "end_time": "2020-03-17T10:11:00.485301",
"exception": false,
- "start_time": "2020-03-17T10:09:11.406304",
+ "start_time": "2020-03-17T10:11:00.440421",
"status": "completed"
},
"tags": []
@@ -170,10 +170,10 @@
"cell_type": "markdown",
"metadata": {
"papermill": {
- "duration": 0.008837,
- "end_time": "2020-03-17T10:09:11.459143",
+ "duration": 0.010852,
+ "end_time": "2020-03-17T10:11:00.514434",
"exception": false,
- "start_time": "2020-03-17T10:09:11.450306",
+ "start_time": "2020-03-17T10:11:00.503582",
"status": "completed"
},
"tags": []
@@ -187,10 +187,10 @@
"execution_count": 7,
"metadata": {
"papermill": {
- "duration": 0.022339,
- "end_time": "2020-03-17T10:09:11.491266",
+ "duration": 0.023074,
+ "end_time": "2020-03-17T10:11:00.548715",
"exception": false,
- "start_time": "2020-03-17T10:09:11.468927",
+ "start_time": "2020-03-17T10:11:00.525641",
"status": "completed"
},
"tags": []
@@ -205,10 +205,10 @@
"execution_count": 8,
"metadata": {
"papermill": {
- "duration": 0.052009,
- "end_time": "2020-03-17T10:09:11.561190",
+ "duration": 0.051489,
+ "end_time": "2020-03-17T10:11:00.612355",
"exception": false,
- "start_time": "2020-03-17T10:09:11.509181",
+ "start_time": "2020-03-17T10:11:00.560866",
"status": "completed"
},
"tags": []
@@ -223,10 +223,10 @@
"execution_count": 9,
"metadata": {
"papermill": {
- "duration": 0.106118,
- "end_time": "2020-03-17T10:09:11.684130",
+ "duration": 0.122006,
+ "end_time": "2020-03-17T10:11:00.754759",
"exception": false,
- "start_time": "2020-03-17T10:09:11.578012",
+ "start_time": "2020-03-17T10:11:00.632753",
"status": "completed"
},
"tags": []
@@ -236,10 +236,10 @@
"data": {
"text/html": [
"\n",
- "<div id=\"altair-viz-56869bd6671a4c4aa6c24e36a7e8dee5\"></div>\n",
+ "<div id=\"altair-viz-e493d8fa8058495a83bddaf8d39e1814\"></div>\n",
"<script type=\"text/javascript\">\n",
" (function(spec, embedOpt){\n",
- " const outputDiv = document.getElementById(\"altair-viz-56869bd6671a4c4aa6c24e36a7e8dee5\");\n",
+ " const outputDiv = document.getElementById(\"altair-viz-e493d8fa8058495a83bddaf8d39e1814\");\n",
" const paths = {\n",
" \"vega\": \"https://cdn.jsdelivr.net/npm//vega@5?noext\",\n",
" \"vega-lib\": \"https://cdn.jsdelivr.net/npm//vega-lib?noext\",\n",
@@ -323,10 +323,10 @@
"execution_count": 10,
"metadata": {
"papermill": {
- "duration": 0.088253,
- "end_time": "2020-03-17T10:09:11.792097",
+ "duration": 0.097497,
+ "end_time": "2020-03-17T10:11:00.874615",
"exception": false,
- "start_time": "2020-03-17T10:09:11.703844",
+ "start_time": "2020-03-17T10:11:00.777118",
"status": "completed"
},
"tags": []
@@ -336,10 +336,10 @@
"data": {
"text/html": [
"\n",
- "<div id=\"altair-viz-7839de7b54a8428fa8f396abd0ff7cda\"></div>\n",
+ "<div id=\"altair-viz-c6740e839acf4403b40ed0387ec1177f\"></div>\n",
"<script type=\"text/javascript\">\n",
" (function(spec, embedOpt){\n",
- " const outputDiv = document.getElementById(\"altair-viz-7839de7b54a8428fa8f396abd0ff7cda\");\n",
+ " const outputDiv = document.getElementById(\"altair-viz-c6740e839acf4403b40ed0387ec1177f\");\n",
" const paths = {\n",
" \"vega\": \"https://cdn.jsdelivr.net/npm//vega@5?noext\",\n",
" \"vega-lib\": \"https://cdn.jsdelivr.net/npm//vega-lib?noext\",\n",
@@ -439,10 +439,10 @@
"cell_type": "markdown",
"metadata": {
"papermill": {
- "duration": 0.011818,
- "end_time": "2020-03-17T10:09:11.825949",
+ "duration": 0.011954,
+ "end_time": "2020-03-17T10:11:00.909056",
"exception": false,
- "start_time": "2020-03-17T10:09:11.814131",
+ "start_time": "2020-03-17T10:11:00.897102",
"status": "completed"
},
"tags": []
@@ -456,10 +456,10 @@
"execution_count": 11,
"metadata": {
"papermill": {
- "duration": 0.063665,
- "end_time": "2020-03-17T10:09:11.900709",
+ "duration": 0.060066,
+ "end_time": "2020-03-17T10:11:00.979454",
"exception": false,
- "start_time": "2020-03-17T10:09:11.837044",
+ "start_time": "2020-03-17T10:11:00.919388",
"status": "completed"
},
"tags": []
@@ -478,10 +478,10 @@
"execution_count": 12,
"metadata": {
"papermill": {
- "duration": 0.129651,
- "end_time": "2020-03-17T10:09:12.053878",
+ "duration": 0.132528,
+ "end_time": "2020-03-17T10:11:01.137763",
"exception": false,
- "start_time": "2020-03-17T10:09:11.924227",
+ "start_time": "2020-03-17T10:11:01.005235",
"status": "completed"
},
"tags": []
@@ -491,10 +491,10 @@
"data": {
"text/html": [
"\n",
- "<div id=\"altair-viz-e335c1cee6a84841ab2d492b189f5eec\"></div>\n",
+ "<div id=\"altair-viz-4be5bf2aed384e65b0b603529c959e62\"></div>\n",
"<script type=\"text/javascript\">\n",
" (function(spec, embedOpt){\n",
- " const outputDiv = document.getElementById(\"altair-viz-e335c1cee6a84841ab2d492b189f5eec\");\n",
+ " const outputDiv = document.getElementById(\"altair-viz-4be5bf2aed384e65b0b603529c959e62\");\n",
" const paths = {\n",
" \"vega\": \"https://cdn.jsdelivr.net/npm//vega@5?noext\",\n",
" \"vega-lib\": \"https://cdn.jsdelivr.net/npm//vega-lib?noext\",\n",
@@ -588,10 +588,10 @@
"execution_count": 13,
"metadata": {
"papermill": {
- "duration": 0.228143,
- "end_time": "2020-03-17T10:09:12.302021",
+ "duration": 0.229241,
+ "end_time": "2020-03-17T10:11:01.385083",
"exception": false,
- "start_time": "2020-03-17T10:09:12.073878",
+ "start_time": "2020-03-17T10:11:01.155842",
"status": "completed"
},
"tags": []
@@ -622,10 +622,10 @@
"execution_count": 14,
"metadata": {
"papermill": {
- "duration": 0.045066,
- "end_time": "2020-03-17T10:09:12.379287",
+ "duration": 0.041152,
+ "end_time": "2020-03-17T10:11:01.458520",
"exception": false,
- "start_time": "2020-03-17T10:09:12.334221",
+ "start_time": "2020-03-17T10:11:01.417368",
"status": "completed"
},
"tags": []
@@ -677,10 +677,10 @@
"execution_count": 15,
"metadata": {
"papermill": {
- "duration": 0.259114,
- "end_time": "2020-03-17T10:09:12.664203",
+ "duration": 0.278153,
+ "end_time": "2020-03-17T10:11:01.759851",
"exception": false,
- "start_time": "2020-03-17T10:09:12.405089",
+ "start_time": "2020-03-17T10:11:01.481698",
"status": "completed"
},
"tags": []
@@ -690,10 +690,10 @@
"data": {
"text/html": [
"\n",
- "<div id=\"altair-viz-a1cda4400ab44a99ab9aa89bc9727532\"></div>\n",
+ "<div id=\"altair-viz-6dc91cf4c57e43f9a48d8b3dfa8ce099\"></div>\n",
"<script type=\"text/javascript\">\n",
" (function(spec, embedOpt){\n",
- " const outputDiv = document.getElementById(\"altair-viz-a1cda4400ab44a99ab9aa89bc9727532\");\n",
+ " const outputDiv = document.getElementById(\"altair-viz-6dc91cf4c57e43f9a48d8b3dfa8ce099\");\n",
" const paths = {\n",
" \"vega\": \"https://cdn.jsdelivr.net/npm//vega@5?noext\",\n",
" \"vega-lib\": \"https://cdn.jsdelivr.net/npm//vega-lib?noext\",\n",
@@ -789,10 +789,10 @@
"execution_count": 16,
"metadata": {
"papermill": {
- "duration": 0.263349,
- "end_time": "2020-03-17T10:09:12.954990",
+ "duration": 0.268107,
+ "end_time": "2020-03-17T10:11:02.053729",
"exception": false,
- "start_time": "2020-03-17T10:09:12.691641",
+ "start_time": "2020-03-17T10:11:01.785622",
"status": "completed"
},
"tags": []
@@ -802,10 +802,10 @@
"data": {
"text/html": [
"\n",
- "<div id=\"altair-viz-8e5a22250dfc48d9be88cd4df84d0bf2\"></div>\n",
+ "<div id=\"altair-viz-1d15b1a2fa0e492a85459c8ed2773078\"></div>\n",
"<script type=\"text/javascript\">\n",
" (function(spec, embedOpt){\n",
- " const outputDiv = document.getElementById(\"altair-viz-8e5a22250dfc48d9be88cd4df84d0bf2\");\n",
+ " const outputDiv = document.getElementById(\"altair-viz-1d15b1a2fa0e492a85459c8ed2773078\");\n",
" const paths = {\n",
" \"vega\": \"https://cdn.jsdelivr.net/npm//vega@5?noext\",\n",
" \"vega-lib\": \"https://cdn.jsdelivr.net/npm//vega-lib?noext\",\n",
@@ -912,20 +912,20 @@
"version": "3.7.6"
},
"papermill": {
- "duration": 3.509676,
- "end_time": "2020-03-17T10:09:13.296121",
+ "duration": 3.525527,
+ "end_time": "2020-03-17T10:11:02.396887",
"environment_variables": {},
"exception": null,
- "input_path": "/tmp/nun9h85i/notebooks/Dashboard.ipynb",
+ "input_path": "/tmp/1zkv10my/notebooks/Dashboard.ipynb",
"output_path": "runs/Dashboard.run.ipynb",
"parameters": {
- "PAPERMILL_INPUT_PATH": "/tmp/nun9h85i/notebooks/Dashboard.ipynb",
+ "PAPERMILL_INPUT_PATH": "/tmp/1zkv10my/notebooks/Dashboard.ipynb",
"PAPERMILL_OUTPUT_PATH": "runs/Dashboard.run.ipynb",
- "geodata_path": "/tmp/nun9h85i/data/geodata/geo_data.csv",
- "rates_folder": "/tmp/nun9h85i/data/covid-19_rates",
- "ts_folder": "/tmp/nun9h85i/data/covid-19_jhu-csse"
+ "geodata_path": "/tmp/1zkv10my/data/geodata/geo_data.csv",
+ "rates_folder": "/tmp/1zkv10my/data/covid-19_rates",
+ "ts_folder": "/tmp/1zkv10my/data/covid-19_jhu-csse"
},
- "start_time": "2020-03-17T10:09:09.786445",
+ "start_time": "2020-03-17T10:10:58.871360",
"version": "1.1.0"
}
},