diff --git a/code/Results/EuclidDissimilarity_matrix.pdf b/code/Results/EuclidDissimilarity_matrix.pdf index 16a389d0f64d0b07547efbca51157054c75d8707..72a9da5fb5919307d4c357c2b3571800fd4798a8 100644 Binary files a/code/Results/EuclidDissimilarity_matrix.pdf and b/code/Results/EuclidDissimilarity_matrix.pdf differ diff --git a/code/Results/Feature_PCA_Male_Female_nbClust_3_complete.pdf b/code/Results/Feature_PCA_Male_Female_nbClust_3_complete.pdf index 55af3c180b74c4347ca3fc009f0404e8e5e321d3..2107cef8c357ab36d692b69fb5330d23a362260b 100644 Binary files a/code/Results/Feature_PCA_Male_Female_nbClust_3_complete.pdf and b/code/Results/Feature_PCA_Male_Female_nbClust_3_complete.pdf differ diff --git a/code/Results/Feature_PCA_Male_Female_nbClust_3_complete_3D.pdf b/code/Results/Feature_PCA_Male_Female_nbClust_3_complete_3D.pdf index 18a4b8d8ea95726bd6ba7caf039edbde82cf64f8..c8c9dbb34b175ffc2f08a2de8641059d89eb5b46 100644 Binary files a/code/Results/Feature_PCA_Male_Female_nbClust_3_complete_3D.pdf and b/code/Results/Feature_PCA_Male_Female_nbClust_3_complete_3D.pdf differ diff --git a/code/Results/Feature_PCA_Male_Female_nbClust_3_complete_3D_z0.pdf b/code/Results/Feature_PCA_Male_Female_nbClust_3_complete_3D_z0.pdf index dd7a320344a1421f4ce2152c4b1a50d4be759c72..3558d06877adda64b7fce0a4bd26914a44ab0876 100644 Binary files a/code/Results/Feature_PCA_Male_Female_nbClust_3_complete_3D_z0.pdf and b/code/Results/Feature_PCA_Male_Female_nbClust_3_complete_3D_z0.pdf differ diff --git a/code/Results/Feature_PCA_Male_Female_nbClust_3_complete_biplot_15.pdf b/code/Results/Feature_PCA_Male_Female_nbClust_3_complete_biplot_15.pdf index bac7f436830194d863608741f8e39523dbf2f276..22fa19699d632a3d4561cca24e3f7f2da5535b9f 100644 Binary files a/code/Results/Feature_PCA_Male_Female_nbClust_3_complete_biplot_15.pdf and b/code/Results/Feature_PCA_Male_Female_nbClust_3_complete_biplot_15.pdf differ diff --git a/code/Results/Feature_PCA_Male_Female_nbClust_3_complete_explainedVar.pdf b/code/Results/Feature_PCA_Male_Female_nbClust_3_complete_explainedVar.pdf index a9f95ced1ab8dfe2f93d3b76e134db277cc180d4..29fc11cc7ef18f4b0dfe2d53a6f7fec6c0f757e3 100644 Binary files a/code/Results/Feature_PCA_Male_Female_nbClust_3_complete_explainedVar.pdf and b/code/Results/Feature_PCA_Male_Female_nbClust_3_complete_explainedVar.pdf differ diff --git a/code/Results/Feature_PCA_Male_Female_nbClust_3_complete_topVarContrib_1_21.pdf b/code/Results/Feature_PCA_Male_Female_nbClust_3_complete_topVarContrib_1_21.pdf index 16ebacd10bbc19b8a4532b4471ec621282f0fd9a..7cd6e323325216b84012147e61a375a3b27f52be 100644 Binary files a/code/Results/Feature_PCA_Male_Female_nbClust_3_complete_topVarContrib_1_21.pdf and b/code/Results/Feature_PCA_Male_Female_nbClust_3_complete_topVarContrib_1_21.pdf differ diff --git a/code/Results/Feature_PCA_Male_Female_nbClust_3_complete_topVarContrib_21.pdf b/code/Results/Feature_PCA_Male_Female_nbClust_3_complete_topVarContrib_21.pdf index 2b040ad0bfe67193e180606f78bccf9b9d410004..fc459bdc9e8e171d156cc1eddeb64426a37ea337 100644 Binary files a/code/Results/Feature_PCA_Male_Female_nbClust_3_complete_topVarContrib_21.pdf and b/code/Results/Feature_PCA_Male_Female_nbClust_3_complete_topVarContrib_21.pdf differ diff --git a/code/Results/Feature_PCA_Male_Female_nbClust_3_complete_topVarContrib_2_21.pdf b/code/Results/Feature_PCA_Male_Female_nbClust_3_complete_topVarContrib_2_21.pdf index 16b3771533ba4daaabaf515b00bce5f30f502b48..ff16e966636372a72b5af06adc99d456ec620237 100644 Binary files a/code/Results/Feature_PCA_Male_Female_nbClust_3_complete_topVarContrib_2_21.pdf and b/code/Results/Feature_PCA_Male_Female_nbClust_3_complete_topVarContrib_2_21.pdf differ diff --git a/code/Results/Feature_PCA_Male_Female_nbClust_3_complete_varContribution_2.pdf b/code/Results/Feature_PCA_Male_Female_nbClust_3_complete_varContribution_2.pdf index 29481976391d9d7f4bde8cbeee8c6d71fee9baeb..967ca3a2f77db05d72e06b387a7ff220a83b5d2a 100644 Binary files a/code/Results/Feature_PCA_Male_Female_nbClust_3_complete_varContribution_2.pdf and b/code/Results/Feature_PCA_Male_Female_nbClust_3_complete_varContribution_2.pdf differ diff --git a/code/Results/Feature_PCA_noClusters_Male_Female.pdf b/code/Results/Feature_PCA_noClusters_Male_Female.pdf index 3ffca8d186055ab7179fc93590d5c29ec14262a9..b1d6ca8c7518da6b68c847c6491c12f661ab2f2b 100644 Binary files a/code/Results/Feature_PCA_noClusters_Male_Female.pdf and b/code/Results/Feature_PCA_noClusters_Male_Female.pdf differ diff --git a/code/Results/Feature_PCA_noClusters_Male_Female_biplot_15.pdf b/code/Results/Feature_PCA_noClusters_Male_Female_biplot_15.pdf index e2353575e170344fdf677aae9ac41a50ade109a3..46e15bf550659eeb6d21c0c076b0a0b716f9477f 100644 Binary files a/code/Results/Feature_PCA_noClusters_Male_Female_biplot_15.pdf and b/code/Results/Feature_PCA_noClusters_Male_Female_biplot_15.pdf differ diff --git a/code/Results/Feature_PCA_noClusters_Male_Female_explainedVar.pdf b/code/Results/Feature_PCA_noClusters_Male_Female_explainedVar.pdf index 93fca780286d6ed64f8bf32247cf2c08429c5242..3f6feef92c372267ddbdd66a7d788556e32478d6 100644 Binary files a/code/Results/Feature_PCA_noClusters_Male_Female_explainedVar.pdf and b/code/Results/Feature_PCA_noClusters_Male_Female_explainedVar.pdf differ diff --git a/code/Results/Feature_PCA_noClusters_Male_Female_topVarContrib_1_21.pdf b/code/Results/Feature_PCA_noClusters_Male_Female_topVarContrib_1_21.pdf index e0eadcb5bebf8057abc0bf72412bbc99b0353700..02945b71722fd03c1b93a410776dede20e0441c5 100644 Binary files a/code/Results/Feature_PCA_noClusters_Male_Female_topVarContrib_1_21.pdf and b/code/Results/Feature_PCA_noClusters_Male_Female_topVarContrib_1_21.pdf differ diff --git a/code/Results/Feature_PCA_noClusters_Male_Female_topVarContrib_21.pdf b/code/Results/Feature_PCA_noClusters_Male_Female_topVarContrib_21.pdf index bb6c878a1a603a6f16bc3ef4e5b17e487393b233..1840a64cb3341090913b2acaa8d3c7109a33b31b 100644 Binary files a/code/Results/Feature_PCA_noClusters_Male_Female_topVarContrib_21.pdf and b/code/Results/Feature_PCA_noClusters_Male_Female_topVarContrib_21.pdf differ diff --git a/code/Results/Feature_PCA_noClusters_Male_Female_topVarContrib_2_21.pdf b/code/Results/Feature_PCA_noClusters_Male_Female_topVarContrib_2_21.pdf index e080ae0a400a9901d6038e3bb61f8d4a2ef8bfe6..1a9515278ee3801fc7d4b717d44f79679826c626 100644 Binary files a/code/Results/Feature_PCA_noClusters_Male_Female_topVarContrib_2_21.pdf and b/code/Results/Feature_PCA_noClusters_Male_Female_topVarContrib_2_21.pdf differ diff --git a/code/Results/Feature_PCA_noClusters_Male_Female_varContribution_2.pdf b/code/Results/Feature_PCA_noClusters_Male_Female_varContribution_2.pdf index da04c3f7e347b20d94bc9dca285ab50f8b4308f0..db5fd605866c241dfdb7ca0c58b720b02d1d268e 100644 Binary files a/code/Results/Feature_PCA_noClusters_Male_Female_varContribution_2.pdf and b/code/Results/Feature_PCA_noClusters_Male_Female_varContribution_2.pdf differ diff --git a/code/Results/Feature_cluster_IncidDistrib_Male_Female_nbClust_3_complete.pdf b/code/Results/Feature_cluster_IncidDistrib_Male_Female_nbClust_3_complete.pdf index 2c6f23dbf105a6b5e1fa61e99d8c5ad8916681b5..e328523ec59031cf990566e1b97a671d512a7ef2 100644 Binary files a/code/Results/Feature_cluster_IncidDistrib_Male_Female_nbClust_3_complete.pdf and b/code/Results/Feature_cluster_IncidDistrib_Male_Female_nbClust_3_complete.pdf differ diff --git a/code/Results/Feature_cluster_PrevDistrib_Male_Female_nbClust_3_complete.pdf b/code/Results/Feature_cluster_PrevDistrib_Male_Female_nbClust_3_complete.pdf index da9a8f0a4895bbdb89bb2de5931122697d16802a..c8db0295ac34b5bf11ce94db82c18ad0bacfa374 100644 Binary files a/code/Results/Feature_cluster_PrevDistrib_Male_Female_nbClust_3_complete.pdf and b/code/Results/Feature_cluster_PrevDistrib_Male_Female_nbClust_3_complete.pdf differ diff --git a/code/Results/Feature_dend_Male_Female_complete.pdf b/code/Results/Feature_dend_Male_Female_complete.pdf index 59f952b16fd34f44bc92c43f99ec8292a456df04..e261359d3627a7251f5615394916f2506c634ac7 100644 Binary files a/code/Results/Feature_dend_Male_Female_complete.pdf and b/code/Results/Feature_dend_Male_Female_complete.pdf differ diff --git a/code/Results/Feature_map_Male_Female_nbClust_3_complete.pdf b/code/Results/Feature_map_Male_Female_nbClust_3_complete.pdf index 8e7f946cd35a209644228c6efa2cac0fc3fb3bb6..cf0003c0de4f7267a283e64a6d95186297e9d7e0 100644 Binary files a/code/Results/Feature_map_Male_Female_nbClust_3_complete.pdf and b/code/Results/Feature_map_Male_Female_nbClust_3_complete.pdf differ diff --git a/code/Results/density_var_10_3Clusters.pdf b/code/Results/density_var_10_3Clusters.pdf index 33d6dc5175c32ef73035e0e58ef36cd4c4285bf5..4b49e7b3f81f4983f4473a609680cb7331009457 100644 Binary files a/code/Results/density_var_10_3Clusters.pdf and b/code/Results/density_var_10_3Clusters.pdf differ diff --git a/code/Results/density_var_11_3Clusters.pdf b/code/Results/density_var_11_3Clusters.pdf index 74bf2eb8f8cb4cc6a2c1ee1534aa4180deb3e27d..2237acd09920f40b5db941bca483df3ba1aa38d6 100644 Binary files a/code/Results/density_var_11_3Clusters.pdf and b/code/Results/density_var_11_3Clusters.pdf differ diff --git a/code/Results/density_var_12_3Clusters.pdf b/code/Results/density_var_12_3Clusters.pdf index 673959a030a6f3ec9703c3a9c86b478f896eb073..e2a38aa9ac915af2477d32e3d64ce50cfbb04948 100644 Binary files a/code/Results/density_var_12_3Clusters.pdf and b/code/Results/density_var_12_3Clusters.pdf differ diff --git a/code/Results/density_var_13_3Clusters.pdf b/code/Results/density_var_13_3Clusters.pdf index fa2446a6123a279a72817e346091bbb929a5ea77..071eb8d737fed13ee5334cee4bdc1300dd42c6be 100644 Binary files a/code/Results/density_var_13_3Clusters.pdf and b/code/Results/density_var_13_3Clusters.pdf differ diff --git a/code/Results/density_var_14_3Clusters.pdf b/code/Results/density_var_14_3Clusters.pdf index 7d151bca66a01691918383ba760c4b21e98db0fd..f363ab2f30d3ce5bbef40caa6d524953bd679f1e 100644 Binary files a/code/Results/density_var_14_3Clusters.pdf and b/code/Results/density_var_14_3Clusters.pdf differ diff --git a/code/Results/density_var_15_3Clusters.pdf b/code/Results/density_var_15_3Clusters.pdf index 412dafd83e12e66e409a2ce0e2880c19e408202a..9064141eecd4e41b1c36dbc6a352da879685855a 100644 Binary files a/code/Results/density_var_15_3Clusters.pdf and b/code/Results/density_var_15_3Clusters.pdf differ diff --git a/code/Results/density_var_16_3Clusters.pdf b/code/Results/density_var_16_3Clusters.pdf index 7abb4dbfac999d7524a32850ed8e0a18154c816a..4294d23820dc5da40dbb5863e4c3a301b264b130 100644 Binary files a/code/Results/density_var_16_3Clusters.pdf and b/code/Results/density_var_16_3Clusters.pdf differ diff --git a/code/Results/density_var_17_3Clusters.pdf b/code/Results/density_var_17_3Clusters.pdf index 3d5bc4dd7cf5ebea888a7b264da1e0f48bd4e990..66a24508daa5073c9b8d4da4a4270b728c817019 100644 Binary files a/code/Results/density_var_17_3Clusters.pdf and b/code/Results/density_var_17_3Clusters.pdf differ diff --git a/code/Results/density_var_18_3Clusters.pdf b/code/Results/density_var_18_3Clusters.pdf index 15d38f029e82118e39922619668a81686d3c1650..987cd101b09e47504610e0c1cecab4afbabc805b 100644 Binary files a/code/Results/density_var_18_3Clusters.pdf and b/code/Results/density_var_18_3Clusters.pdf differ diff --git a/code/Results/density_var_19_3Clusters.pdf b/code/Results/density_var_19_3Clusters.pdf index 565bc0535ef6cb6c2b5fab826afa26069313249b..af7acd1a0b9d799640e67a44f990773ecbf92281 100644 Binary files a/code/Results/density_var_19_3Clusters.pdf and b/code/Results/density_var_19_3Clusters.pdf differ diff --git a/code/Results/density_var_1_3Clusters.pdf b/code/Results/density_var_1_3Clusters.pdf index e2a409484f301a7a3ea3be1e8b05141375aa4382..2bd1cee465155d74a23dba4237f070a37cb84778 100644 Binary files a/code/Results/density_var_1_3Clusters.pdf and b/code/Results/density_var_1_3Clusters.pdf differ diff --git a/code/Results/density_var_20_3Clusters.pdf b/code/Results/density_var_20_3Clusters.pdf index 34f9a25f97ce06919251acf3640d54af25afb0c3..8d5e2cc1625f5cfe3c455d984640be1251530eef 100644 Binary files a/code/Results/density_var_20_3Clusters.pdf and b/code/Results/density_var_20_3Clusters.pdf differ diff --git a/code/Results/density_var_21_3Clusters.pdf b/code/Results/density_var_21_3Clusters.pdf index f6a0aa93a713683bac96d8f2080d1fb97a471bdb..d6021b4f54b2f90573f736afdfaf1bd978b00e01 100644 Binary files a/code/Results/density_var_21_3Clusters.pdf and b/code/Results/density_var_21_3Clusters.pdf differ diff --git a/code/Results/density_var_22_3Clusters.pdf b/code/Results/density_var_22_3Clusters.pdf index 0e2636861ab1649dfd55e6fd591e3bab47c545bf..493e70c804b74f02a8c458a9b5274457f97dc86a 100644 Binary files a/code/Results/density_var_22_3Clusters.pdf and b/code/Results/density_var_22_3Clusters.pdf differ diff --git a/code/Results/density_var_23_3Clusters.pdf b/code/Results/density_var_23_3Clusters.pdf index 295344c13866d453ebc189829909a37c8000a8e0..544baf931a7c1af715c3ae7f16db28ec401a13f2 100644 Binary files a/code/Results/density_var_23_3Clusters.pdf and b/code/Results/density_var_23_3Clusters.pdf differ diff --git a/code/Results/density_var_24_3Clusters.pdf b/code/Results/density_var_24_3Clusters.pdf index 7b284c77017d483228bf99bcf1d2496b0496fd95..0cac7e959c4bdf2ed4d9b7237fc346a702a083a7 100644 Binary files a/code/Results/density_var_24_3Clusters.pdf and b/code/Results/density_var_24_3Clusters.pdf differ diff --git a/code/Results/density_var_25_3Clusters.pdf b/code/Results/density_var_25_3Clusters.pdf index 418cfbbd408ad54544c5ce31dab64128f050c229..1adeaa98cd9b168f60ee42e291d5d09d9fc02eb9 100644 Binary files a/code/Results/density_var_25_3Clusters.pdf and b/code/Results/density_var_25_3Clusters.pdf differ diff --git a/code/Results/density_var_26_3Clusters.pdf b/code/Results/density_var_26_3Clusters.pdf index 4e4f9e8cda7e479d07cde606f7438caf180eed11..ae5d17859ce23a38f204acfc7830b9d8bfe5a01c 100644 Binary files a/code/Results/density_var_26_3Clusters.pdf and b/code/Results/density_var_26_3Clusters.pdf differ diff --git a/code/Results/density_var_27_3Clusters.pdf b/code/Results/density_var_27_3Clusters.pdf index ac2bb213da33a0e54d2270e594ff3e57b50d5868..cfa33dcc1732fa0e4cb40c8a7f6044dd2855fa62 100644 Binary files a/code/Results/density_var_27_3Clusters.pdf and b/code/Results/density_var_27_3Clusters.pdf differ diff --git a/code/Results/density_var_28_3Clusters.pdf b/code/Results/density_var_28_3Clusters.pdf index 74b7333f3fce5bc3537fd4157edbf892a88fa22e..2f35dded871b8d8add534a688e7c5cf53c6c2fa1 100644 Binary files a/code/Results/density_var_28_3Clusters.pdf and b/code/Results/density_var_28_3Clusters.pdf differ diff --git a/code/Results/density_var_29_3Clusters.pdf b/code/Results/density_var_29_3Clusters.pdf index 1df9b3609da318e36b2574c8d3c437380f51e950..237d59c69b4519dcfaa7d914a2911863b65da5e3 100644 Binary files a/code/Results/density_var_29_3Clusters.pdf and b/code/Results/density_var_29_3Clusters.pdf differ diff --git a/code/Results/density_var_2_3Clusters.pdf b/code/Results/density_var_2_3Clusters.pdf index 42efa6408eb6a0104745784d34ece78b1fa1fb91..020c9144bbe831de52a1b69edeb9f9247e9ce2e2 100644 Binary files a/code/Results/density_var_2_3Clusters.pdf and b/code/Results/density_var_2_3Clusters.pdf differ diff --git a/code/Results/density_var_30_3Clusters.pdf b/code/Results/density_var_30_3Clusters.pdf index 541676886c3607d412fc794e32e68617f3b84f37..a99125c818384986cf7ebeba0c50f6d33dd352ce 100644 Binary files a/code/Results/density_var_30_3Clusters.pdf and b/code/Results/density_var_30_3Clusters.pdf differ diff --git a/code/Results/density_var_31_3Clusters.pdf b/code/Results/density_var_31_3Clusters.pdf index d54220c3cc3a44728b2a95e2bcfcc7efe6783d06..58bb652eee7ddf210762468247f688ae3bc09434 100644 Binary files a/code/Results/density_var_31_3Clusters.pdf and b/code/Results/density_var_31_3Clusters.pdf differ diff --git a/code/Results/density_var_32_3Clusters.pdf b/code/Results/density_var_32_3Clusters.pdf index 7116a2a1fd322ef2225202d7219901bef419e910..2d7b5c86b3c205d345cd6558612f165e9a4198f3 100644 Binary files a/code/Results/density_var_32_3Clusters.pdf and b/code/Results/density_var_32_3Clusters.pdf differ diff --git a/code/Results/density_var_33_3Clusters.pdf b/code/Results/density_var_33_3Clusters.pdf index 4f83b3e52233e7ed2a9038017d1ee5896f193a7a..1d8aa1548ee2eaa9f7264df3a860ce12abd1a1a6 100644 Binary files a/code/Results/density_var_33_3Clusters.pdf and b/code/Results/density_var_33_3Clusters.pdf differ diff --git a/code/Results/density_var_34_3Clusters.pdf b/code/Results/density_var_34_3Clusters.pdf index bafd29e61b715db32c4e4c71fde2279dc426e07d..e6bfb37bf3a8a4a63c217438e078543fc0ee0daf 100644 Binary files a/code/Results/density_var_34_3Clusters.pdf and b/code/Results/density_var_34_3Clusters.pdf differ diff --git a/code/Results/density_var_35_3Clusters.pdf b/code/Results/density_var_35_3Clusters.pdf index 0a2e00c65a54c4e207d0a63b69e544b0a3bb33dd..b5b805e9df2964141728c3f30b949dde623fb48c 100644 Binary files a/code/Results/density_var_35_3Clusters.pdf and b/code/Results/density_var_35_3Clusters.pdf differ diff --git a/code/Results/density_var_36_3Clusters.pdf b/code/Results/density_var_36_3Clusters.pdf index 092ab52e585271205101a52628990338c1548b20..b509926dfe5718d0c6929b0d99728c3b0b1495bd 100644 Binary files a/code/Results/density_var_36_3Clusters.pdf and b/code/Results/density_var_36_3Clusters.pdf differ diff --git a/code/Results/density_var_37_3Clusters.pdf b/code/Results/density_var_37_3Clusters.pdf index b0ff1a94892efd283536a6fb02047873f2925ded..93c8e78659888f45fbbdf5f4c9b619e8ddee62ab 100644 Binary files a/code/Results/density_var_37_3Clusters.pdf and b/code/Results/density_var_37_3Clusters.pdf differ diff --git a/code/Results/density_var_38_3Clusters.pdf b/code/Results/density_var_38_3Clusters.pdf index fa657e250ffdba30e2fe547da089195f1dcf44dd..2e2045883e223913ca736160fe13812ad354ee4c 100644 Binary files a/code/Results/density_var_38_3Clusters.pdf and b/code/Results/density_var_38_3Clusters.pdf differ diff --git a/code/Results/density_var_39_3Clusters.pdf b/code/Results/density_var_39_3Clusters.pdf index 0b8bbabf239c383824c183a023bcd515865fb7af..4c553b7f4e59236b1ee30627a2b2a6f83dcda349 100644 Binary files a/code/Results/density_var_39_3Clusters.pdf and b/code/Results/density_var_39_3Clusters.pdf differ diff --git a/code/Results/density_var_3_3Clusters.pdf b/code/Results/density_var_3_3Clusters.pdf index 985f8ee8e6d53637d79f30640a32e16c8224bfd3..f1f915480ba7da5b00b6cc40860bcbe838a5d798 100644 Binary files a/code/Results/density_var_3_3Clusters.pdf and b/code/Results/density_var_3_3Clusters.pdf differ diff --git a/code/Results/density_var_40_3Clusters.pdf b/code/Results/density_var_40_3Clusters.pdf index 2ebcf51075d9933de397530d671330b971ce86ac..abea84f232c23c72f26ecaaa7d4d1be4eee04237 100644 Binary files a/code/Results/density_var_40_3Clusters.pdf and b/code/Results/density_var_40_3Clusters.pdf differ diff --git a/code/Results/density_var_41_3Clusters.pdf b/code/Results/density_var_41_3Clusters.pdf index a4ba9c0553f9a243fe025cd7bda9ad30c792ba4e..625dad3fbdbc4f5b37e41d53f15f5e249cbe2bcf 100644 Binary files a/code/Results/density_var_41_3Clusters.pdf and b/code/Results/density_var_41_3Clusters.pdf differ diff --git a/code/Results/density_var_42_3Clusters.pdf b/code/Results/density_var_42_3Clusters.pdf index 949aaa4bd79f71a1bd451456b696f5ce3adfc4ff..ecded108c8ce25b43ddc33c831b52c9db0ff0581 100644 Binary files a/code/Results/density_var_42_3Clusters.pdf and b/code/Results/density_var_42_3Clusters.pdf differ diff --git a/code/Results/density_var_43_3Clusters.pdf b/code/Results/density_var_43_3Clusters.pdf index 3c90ad27971b0c0911e28ea5d8069bcbf3f69c31..b07fcd7ae7ab7a74e826de7a3dab104ebd261d57 100644 Binary files a/code/Results/density_var_43_3Clusters.pdf and b/code/Results/density_var_43_3Clusters.pdf differ diff --git a/code/Results/density_var_44_3Clusters.pdf b/code/Results/density_var_44_3Clusters.pdf index b52fc2e127e8f57bbe78e931a8acb121010153b8..7844ebd9cba1c3e9e7166f74702d34595610db67 100644 Binary files a/code/Results/density_var_44_3Clusters.pdf and b/code/Results/density_var_44_3Clusters.pdf differ diff --git a/code/Results/density_var_45_3Clusters.pdf b/code/Results/density_var_45_3Clusters.pdf index 6a7ce3a009c2db43adbe50ffe5df54b64cc462a2..6d7d36f64caf3c52211e762097f9ed9d5e2a481a 100644 Binary files a/code/Results/density_var_45_3Clusters.pdf and b/code/Results/density_var_45_3Clusters.pdf differ diff --git a/code/Results/density_var_46_3Clusters.pdf b/code/Results/density_var_46_3Clusters.pdf index de157527c55afc186703b0b26b98b50427ef2b9c..d6e57b1d708ac5337a0c584e4ca49a8d54a6f983 100644 Binary files a/code/Results/density_var_46_3Clusters.pdf and b/code/Results/density_var_46_3Clusters.pdf differ diff --git a/code/Results/density_var_47_3Clusters.pdf b/code/Results/density_var_47_3Clusters.pdf index 7d41f1cc2a80d2392bdb6cc063291cc5a6f37095..2767f4a72e6585243d32d5e2157d708d432bde6e 100644 Binary files a/code/Results/density_var_47_3Clusters.pdf and b/code/Results/density_var_47_3Clusters.pdf differ diff --git a/code/Results/density_var_48_3Clusters.pdf b/code/Results/density_var_48_3Clusters.pdf index fc60b3b5cddac07c0a4d9cd1d05c17efbc889b2a..7ff9534c13c3e204944acaea0c41ddaf62603a8b 100644 Binary files a/code/Results/density_var_48_3Clusters.pdf and b/code/Results/density_var_48_3Clusters.pdf differ diff --git a/code/Results/density_var_4_3Clusters.pdf b/code/Results/density_var_4_3Clusters.pdf index 06d20c15e7f6181dce61c86ae2f58aba6469a3e3..51681d728ef11b052f8db0686ab24d2be0cd0aa9 100644 Binary files a/code/Results/density_var_4_3Clusters.pdf and b/code/Results/density_var_4_3Clusters.pdf differ diff --git a/code/Results/density_var_5_3Clusters.pdf b/code/Results/density_var_5_3Clusters.pdf index 9480260327342f153a4238b46946d525826fab4e..f4edbc24048710b58d181409a949e331c7486dac 100644 Binary files a/code/Results/density_var_5_3Clusters.pdf and b/code/Results/density_var_5_3Clusters.pdf differ diff --git a/code/Results/density_var_6_3Clusters.pdf b/code/Results/density_var_6_3Clusters.pdf index 1e7058594a4295e5da5f541023958e5f992fbac1..b143aba4ecc2058788b2f7c66531a12501ad1219 100644 Binary files a/code/Results/density_var_6_3Clusters.pdf and b/code/Results/density_var_6_3Clusters.pdf differ diff --git a/code/Results/density_var_7_3Clusters.pdf b/code/Results/density_var_7_3Clusters.pdf index 9d92d186f11040f7e2db712277f3ef08d2034ac3..25faea8d7a277c27fbe6cb91ef6f988586927a44 100644 Binary files a/code/Results/density_var_7_3Clusters.pdf and b/code/Results/density_var_7_3Clusters.pdf differ diff --git a/code/Results/density_var_8_3Clusters.pdf b/code/Results/density_var_8_3Clusters.pdf index c745968763361fd44c5eb666634c506c1fd2c99f..86ece78c5f4488e073db4b20a2bf2fa60416661f 100644 Binary files a/code/Results/density_var_8_3Clusters.pdf and b/code/Results/density_var_8_3Clusters.pdf differ diff --git a/code/Results/density_var_9_3Clusters.pdf b/code/Results/density_var_9_3Clusters.pdf index 7c6d288acf93cffe5485d825be93ab84179bd4b1..344037e5f49de9db420cc97574f97078f166184f 100644 Binary files a/code/Results/density_var_9_3Clusters.pdf and b/code/Results/density_var_9_3Clusters.pdf differ diff --git a/code/Results/incidenceHistogram_2016.pdf b/code/Results/incidenceHistogram_2016.pdf index f853432b994269e1abde8e8da2ce07b03a5445a2..9488b1c347e45f89ecee2d652eb3f2dfaf9082f1 100644 Binary files a/code/Results/incidenceHistogram_2016.pdf and b/code/Results/incidenceHistogram_2016.pdf differ diff --git a/code/Results/incidenceMap_2016_fixedWidth_40.pdf b/code/Results/incidenceMap_2016_fixedWidth_40.pdf index 92bdf01a882ae26affb89fe225cfc05359593cc1..fce5eb68e554a3286e333101283c98c57a330aee 100644 Binary files a/code/Results/incidenceMap_2016_fixedWidth_40.pdf and b/code/Results/incidenceMap_2016_fixedWidth_40.pdf differ diff --git a/code/Results/loadings.xlsx b/code/Results/loadings.xlsx index f057b938ab35a2df29e4d88bd8961669deabc996..9d1463cb52099a16391be068321a8f63ce3d3199 100644 Binary files a/code/Results/loadings.xlsx and b/code/Results/loadings.xlsx differ diff --git a/code/Results/map_var_1.pdf b/code/Results/map_var_1.pdf index f2684d76036634f5d04cb05245bb01fb41562fe3..fc8724fc03eb24a2c4d8b2a7cd94d0f4cba7fcd5 100644 Binary files a/code/Results/map_var_1.pdf and b/code/Results/map_var_1.pdf differ diff --git a/code/Results/map_var_10.pdf b/code/Results/map_var_10.pdf index f2ea1a83898a6c4ce61bacec6e4449e621bc733b..37562f648b70137639f951bd9223013c1c5597c5 100644 Binary files a/code/Results/map_var_10.pdf and b/code/Results/map_var_10.pdf differ diff --git a/code/Results/map_var_11.pdf b/code/Results/map_var_11.pdf index bf55fc431bfdc881601902742ca3bed5cec0bd3a..ffd3008fc8848167bb7ca653f1eb1b226cb4084a 100644 Binary files a/code/Results/map_var_11.pdf and b/code/Results/map_var_11.pdf differ diff --git a/code/Results/map_var_12.pdf b/code/Results/map_var_12.pdf index 0533099722ae386d32239f94ada54a9c528d7fd3..b3f2855f93be37bceee5a4647c798e94a47caf7e 100644 Binary files a/code/Results/map_var_12.pdf and b/code/Results/map_var_12.pdf differ diff --git a/code/Results/map_var_13.pdf b/code/Results/map_var_13.pdf index 1895e54bd4c49d05f226f143a77f6bf1269a76cb..62b1f9cc57d6bfc7c741a2e32fde2cb9df227960 100644 Binary files a/code/Results/map_var_13.pdf and b/code/Results/map_var_13.pdf differ diff --git a/code/Results/map_var_14.pdf b/code/Results/map_var_14.pdf index f69a39f6e747d7bb1674bbadd1f55c1340e70493..f758c24c24316f3c5b1be113fc7f6117c5dd4d09 100644 Binary files a/code/Results/map_var_14.pdf and b/code/Results/map_var_14.pdf differ diff --git a/code/Results/map_var_15.pdf b/code/Results/map_var_15.pdf index 0aeb0e137f139bf5a03ea67c1b71d93d4b9a5277..b7bf6b893e0b751c80053df65f1e337c1e2e2399 100644 Binary files a/code/Results/map_var_15.pdf and b/code/Results/map_var_15.pdf differ diff --git a/code/Results/map_var_16.pdf b/code/Results/map_var_16.pdf index dc730db4392933c3a8fe5d5975e71ca34aa1f283..e84e62bb7d8c3ccc36cb9e8f04aec9ba109cc72d 100644 Binary files a/code/Results/map_var_16.pdf and b/code/Results/map_var_16.pdf differ diff --git a/code/Results/map_var_17.pdf b/code/Results/map_var_17.pdf index 479d80cfed2c25da99624ecce4c9d312e53d0a0a..44b1e34879e003d1b3375921a2a6092beca31d9b 100644 Binary files a/code/Results/map_var_17.pdf and b/code/Results/map_var_17.pdf differ diff --git a/code/Results/map_var_18.pdf b/code/Results/map_var_18.pdf index ef14bd235169a4076443f9d61ee916520da05401..f1318ca53dd36d82ff0c8ad891fc1a80c6c44e2b 100644 Binary files a/code/Results/map_var_18.pdf and b/code/Results/map_var_18.pdf differ diff --git a/code/Results/map_var_19.pdf b/code/Results/map_var_19.pdf index fe793bc7d28789f070e59bc7c636e7fdb1e58de5..ec2aad0cf8d19a350a7704dbcc66ac7bb1bdcf90 100644 Binary files a/code/Results/map_var_19.pdf and b/code/Results/map_var_19.pdf differ diff --git a/code/Results/map_var_2.pdf b/code/Results/map_var_2.pdf index 56e433d8505946192b0be3a3486da378ce39dc13..9e8c6fb41279f2b37493d27034e4164b81d92304 100644 Binary files a/code/Results/map_var_2.pdf and b/code/Results/map_var_2.pdf differ diff --git a/code/Results/map_var_20.pdf b/code/Results/map_var_20.pdf index 50512413f2ebf1dc4473099902d19ff4a5b9a50c..45214f4b624de9e4454fb985d58790c14febbe63 100644 Binary files a/code/Results/map_var_20.pdf and b/code/Results/map_var_20.pdf differ diff --git a/code/Results/map_var_21.pdf b/code/Results/map_var_21.pdf index 1ff848416f5a7c5ebf28f6424208ea125efe1796..35cf1acf2ebbfc03730065409babd134b80f64c1 100644 Binary files a/code/Results/map_var_21.pdf and b/code/Results/map_var_21.pdf differ diff --git a/code/Results/map_var_22.pdf b/code/Results/map_var_22.pdf index 0f674711dc09c6219b91b0352687dbf7f1ef943f..d4dfc29c3dba82867b53461c0697ec12f56b012b 100644 Binary files a/code/Results/map_var_22.pdf and b/code/Results/map_var_22.pdf differ diff --git a/code/Results/map_var_23.pdf b/code/Results/map_var_23.pdf index 5c2b8a0342b8c425a5d5c02fb9d3491e1997a320..7de0608d8aaf48387e91f44e0a2fb19c0efe777b 100644 Binary files a/code/Results/map_var_23.pdf and b/code/Results/map_var_23.pdf differ diff --git a/code/Results/map_var_24.pdf b/code/Results/map_var_24.pdf index fe44a379260cfdf0d24da81ffdc7b016073844d3..3d4de5eed45362612bf214030df7ada1527eb5c8 100644 Binary files a/code/Results/map_var_24.pdf and b/code/Results/map_var_24.pdf differ diff --git a/code/Results/map_var_25.pdf b/code/Results/map_var_25.pdf index a508575ec3f4b170069e9aa3c7d4cc9617262848..97818397df8c3dff612a5b3f2de128cd1d63dfae 100644 Binary files a/code/Results/map_var_25.pdf and b/code/Results/map_var_25.pdf differ diff --git a/code/Results/map_var_26.pdf b/code/Results/map_var_26.pdf index 20d25666c813c58d381ca077fa676f83201fb4a1..77fced785223ba2d883c5d1afe6f911b8af31907 100644 Binary files a/code/Results/map_var_26.pdf and b/code/Results/map_var_26.pdf differ diff --git a/code/Results/map_var_27.pdf b/code/Results/map_var_27.pdf index 8046b6317cb4c196541e4803839e2cfafeddedd7..38def2050fad516d58906c392534d1bc43b7ca40 100644 Binary files a/code/Results/map_var_27.pdf and b/code/Results/map_var_27.pdf differ diff --git a/code/Results/map_var_28.pdf b/code/Results/map_var_28.pdf index 48dbaabd034a454acbccc4eb83ec5c31954e4f1a..0def78f1437b1c61c35bc6c7f5ceffe39d4c7247 100644 Binary files a/code/Results/map_var_28.pdf and b/code/Results/map_var_28.pdf differ diff --git a/code/Results/map_var_29.pdf b/code/Results/map_var_29.pdf index 7063cf0c71970d79048056fb257d750130e1d1f6..5ce4641ef613c68d6f2c4d82ead45e8d0a2662e0 100644 Binary files a/code/Results/map_var_29.pdf and b/code/Results/map_var_29.pdf differ diff --git a/code/Results/map_var_3.pdf b/code/Results/map_var_3.pdf index 838e9ef291d5233e3f14ee11ed6607faca2fc088..198ba973b979d12d5668a33858eebccec593d938 100644 Binary files a/code/Results/map_var_3.pdf and b/code/Results/map_var_3.pdf differ diff --git a/code/Results/map_var_30.pdf b/code/Results/map_var_30.pdf index 4b5078655ae0996a328868ba33f0f78bf84dcdc5..142fc31784f176f50e4eed5c1df43809c490e1e3 100644 Binary files a/code/Results/map_var_30.pdf and b/code/Results/map_var_30.pdf differ diff --git a/code/Results/map_var_31.pdf b/code/Results/map_var_31.pdf index c743b83122f002a983ba2eddf21cb003ce68b8b5..faf66c3c04e6c60489431fdcf4284833d03107be 100644 Binary files a/code/Results/map_var_31.pdf and b/code/Results/map_var_31.pdf differ diff --git a/code/Results/map_var_32.pdf b/code/Results/map_var_32.pdf index b2a1a24cfb4a2ea24233c3d4de93a7b39647774f..d4cd3c64b3cd1e1d5b422beefd2666b9642c8b01 100644 Binary files a/code/Results/map_var_32.pdf and b/code/Results/map_var_32.pdf differ diff --git a/code/Results/map_var_33.pdf b/code/Results/map_var_33.pdf index 1d2b5de9f2f36c51dc8f4254eb3473fb7e614c9e..3936440b84ed2bc9c1e6f4aedae72214a198235a 100644 Binary files a/code/Results/map_var_33.pdf and b/code/Results/map_var_33.pdf differ diff --git a/code/Results/map_var_34.pdf b/code/Results/map_var_34.pdf index 2ea479c63677348a5489150c9a5da5433c884b13..ef7b6c9b9958b6c016bb6286f22a192c92de7d73 100644 Binary files a/code/Results/map_var_34.pdf and b/code/Results/map_var_34.pdf differ diff --git a/code/Results/map_var_35.pdf b/code/Results/map_var_35.pdf index 6e16fc625d359adf4fce819c2e7b7316687234ab..9cef6d8c43e219b811c5abe82915569dea709a73 100644 Binary files a/code/Results/map_var_35.pdf and b/code/Results/map_var_35.pdf differ diff --git a/code/Results/map_var_36.pdf b/code/Results/map_var_36.pdf index a8259ec4d3de20e4d91de4d4b41e5aba7982281f..c162332c54fefaef199cdb65dd6293d25a4589a3 100644 Binary files a/code/Results/map_var_36.pdf and b/code/Results/map_var_36.pdf differ diff --git a/code/Results/map_var_37.pdf b/code/Results/map_var_37.pdf index 07c8dc6aca0380da42484c7520dc00d192216730..96aa516fac560aef1f98531e5cd2e7a8c2d27a37 100644 Binary files a/code/Results/map_var_37.pdf and b/code/Results/map_var_37.pdf differ diff --git a/code/Results/map_var_38.pdf b/code/Results/map_var_38.pdf index 1aead651e67957354c9b893814fa572f73caa59a..e7ce16b05b21ae2b7f326343d9984d15ace13259 100644 Binary files a/code/Results/map_var_38.pdf and b/code/Results/map_var_38.pdf differ diff --git a/code/Results/map_var_39.pdf b/code/Results/map_var_39.pdf index f7f480f7613bdfae394dc6a89fcccdcd81ab51e7..2dbca585d75a7580a538e181321893db9f61127f 100644 Binary files a/code/Results/map_var_39.pdf and b/code/Results/map_var_39.pdf differ diff --git a/code/Results/map_var_4.pdf b/code/Results/map_var_4.pdf index 30ed32c1054a251db9ec0050a21a384d56266a39..b7f57772ca4d6f898df72710c35cbf65666998d9 100644 Binary files a/code/Results/map_var_4.pdf and b/code/Results/map_var_4.pdf differ diff --git a/code/Results/map_var_40.pdf b/code/Results/map_var_40.pdf index 68b13b3c63874c06028d1c71b2ed33be749cb3ee..900041b74924fe6cdd2ae69c916b91a09a9a666d 100644 Binary files a/code/Results/map_var_40.pdf and b/code/Results/map_var_40.pdf differ diff --git a/code/Results/map_var_41.pdf b/code/Results/map_var_41.pdf index 58c013f23131cf906ebc43f4d51390dbb65c86da..f162333988708dfb5d4ae4ccabde2aaa6928b65e 100644 Binary files a/code/Results/map_var_41.pdf and b/code/Results/map_var_41.pdf differ diff --git a/code/Results/map_var_42.pdf b/code/Results/map_var_42.pdf index f1e2abcf61d3ad6c2f3f178cd905dc43ae013d4c..7f433a84dba0ec44c067992ee5493ba8e99fe9c4 100644 Binary files a/code/Results/map_var_42.pdf and b/code/Results/map_var_42.pdf differ diff --git a/code/Results/map_var_43.pdf b/code/Results/map_var_43.pdf index 9ca5cf9d869e25659fd6b1c934a28c0570209058..d35791785ace48b8808e6c661468fb38468fdf1e 100644 Binary files a/code/Results/map_var_43.pdf and b/code/Results/map_var_43.pdf differ diff --git a/code/Results/map_var_44.pdf b/code/Results/map_var_44.pdf index 0ce8f8a75a9b1e7fd4201bf6965dbfb4d69dc32a..b08ba7dfbb8938a58fbb90b1b194ec97a2262076 100644 Binary files a/code/Results/map_var_44.pdf and b/code/Results/map_var_44.pdf differ diff --git a/code/Results/map_var_45.pdf b/code/Results/map_var_45.pdf index 0849bb168f76072df06f1558e3aa33c397f4bd32..3ef7b7e0327a1ed2ce4732c208afeedd687b7e06 100644 Binary files a/code/Results/map_var_45.pdf and b/code/Results/map_var_45.pdf differ diff --git a/code/Results/map_var_46.pdf b/code/Results/map_var_46.pdf index c4e5a1412832660f2697177b87a4bd2598c6b6a7..68c729e8253caa4b55bf738584204cbbab14cce4 100644 Binary files a/code/Results/map_var_46.pdf and b/code/Results/map_var_46.pdf differ diff --git a/code/Results/map_var_47.pdf b/code/Results/map_var_47.pdf index f9c55c001a79b7115d1b4b9c4b4fae6bea62e61c..0769e26743fa068236aeedea1741a3e7bb1f7ab5 100644 Binary files a/code/Results/map_var_47.pdf and b/code/Results/map_var_47.pdf differ diff --git a/code/Results/map_var_48.pdf b/code/Results/map_var_48.pdf index a40b970090c34d6de648e12068897acde70b7087..5ca72a96b36f860d1aaed3ed92f243b4f51be121 100644 Binary files a/code/Results/map_var_48.pdf and b/code/Results/map_var_48.pdf differ diff --git a/code/Results/map_var_5.pdf b/code/Results/map_var_5.pdf index 76b65c2a40dec0cd84f98a3823a5d6c9cb7bf0fe..37ca6561588696c5a2bbbe9ffd837bbb0ce3f253 100644 Binary files a/code/Results/map_var_5.pdf and b/code/Results/map_var_5.pdf differ diff --git a/code/Results/map_var_6.pdf b/code/Results/map_var_6.pdf index 631e824409d01976910ca817a72318fb817f0a9b..08b5c2d4e09213831fb7c6392410556cc9f3ad3e 100644 Binary files a/code/Results/map_var_6.pdf and b/code/Results/map_var_6.pdf differ diff --git a/code/Results/map_var_7.pdf b/code/Results/map_var_7.pdf index 338fb802c2f5e4dd8d6b4d44f7bb32f91171d89e..22ac10391d596e3a76606e2af4e9e7b5929eae40 100644 Binary files a/code/Results/map_var_7.pdf and b/code/Results/map_var_7.pdf differ diff --git a/code/Results/map_var_8.pdf b/code/Results/map_var_8.pdf index 9693da4812ef4ef10629bca5f0e6f68280cae782..67aaadd690cec8f7872f7b602471b7fd813f1e6b 100644 Binary files a/code/Results/map_var_8.pdf and b/code/Results/map_var_8.pdf differ diff --git a/code/Results/map_var_9.pdf b/code/Results/map_var_9.pdf index 85a8e9893ed69957d656edd9a852a539905d3bd1..fec6992410419bc6d16bfb993f8e6dd7b11c3cb8 100644 Binary files a/code/Results/map_var_9.pdf and b/code/Results/map_var_9.pdf differ diff --git a/code/Results/prevalenceHistogram_2016.pdf b/code/Results/prevalenceHistogram_2016.pdf index ae070a4fee0c4cf08867f56c681985f5914870be..261dff248403ddec02a81f05d892a19fb057c549 100644 Binary files a/code/Results/prevalenceHistogram_2016.pdf and b/code/Results/prevalenceHistogram_2016.pdf differ diff --git a/code/Results/prevalenceMap_2016_fixedWidth_40.pdf b/code/Results/prevalenceMap_2016_fixedWidth_40.pdf index 52910a93c80210f895293406752dd8881bf76d05..0609614ca938673e882b0adaec979b1a22deabb7 100644 Binary files a/code/Results/prevalenceMap_2016_fixedWidth_40.pdf and b/code/Results/prevalenceMap_2016_fixedWidth_40.pdf differ diff --git a/code/Results2/EuclidDissimilarity_matrix.pdf b/code/Results2/EuclidDissimilarity_matrix.pdf new file mode 100644 index 0000000000000000000000000000000000000000..79a6412c8fd216876cbc141eb49b61eb213dc715 Binary files /dev/null and b/code/Results2/EuclidDissimilarity_matrix.pdf differ diff --git a/code/Results2/Feature_PCA_Male_Female_nbClust_3_complete.pdf b/code/Results2/Feature_PCA_Male_Female_nbClust_3_complete.pdf new file mode 100644 index 0000000000000000000000000000000000000000..0acfc85f3a75ca3d9560e587584b6ba9be730f4a Binary files /dev/null and b/code/Results2/Feature_PCA_Male_Female_nbClust_3_complete.pdf differ diff --git a/code/Results2/Feature_PCA_Male_Female_nbClust_3_complete_3D.pdf b/code/Results2/Feature_PCA_Male_Female_nbClust_3_complete_3D.pdf new file mode 100644 index 0000000000000000000000000000000000000000..a89d3595b0d864fa3f39a9d13343c9d6acdb1f94 Binary files /dev/null and b/code/Results2/Feature_PCA_Male_Female_nbClust_3_complete_3D.pdf differ diff --git a/code/Results2/Feature_PCA_Male_Female_nbClust_3_complete_3D_z0.pdf b/code/Results2/Feature_PCA_Male_Female_nbClust_3_complete_3D_z0.pdf new file mode 100644 index 0000000000000000000000000000000000000000..cff6511581083060aada1b321100ac4e9ae97d1b Binary files /dev/null and b/code/Results2/Feature_PCA_Male_Female_nbClust_3_complete_3D_z0.pdf differ diff --git a/code/Results2/Feature_PCA_Male_Female_nbClust_3_complete_biplot_15.pdf b/code/Results2/Feature_PCA_Male_Female_nbClust_3_complete_biplot_15.pdf new file mode 100644 index 0000000000000000000000000000000000000000..7b43d1a7dc1d3ef09b919d6a8ec122f78661d20e Binary files /dev/null and b/code/Results2/Feature_PCA_Male_Female_nbClust_3_complete_biplot_15.pdf differ diff --git a/code/Results2/Feature_PCA_Male_Female_nbClust_3_complete_explainedVar.pdf b/code/Results2/Feature_PCA_Male_Female_nbClust_3_complete_explainedVar.pdf new file mode 100644 index 0000000000000000000000000000000000000000..76fc23009b7eb2df7525c2d14ffb6093ad8c7da8 Binary files /dev/null and b/code/Results2/Feature_PCA_Male_Female_nbClust_3_complete_explainedVar.pdf differ diff --git a/code/Results2/Feature_PCA_Male_Female_nbClust_3_complete_topVarContrib_1_21.pdf b/code/Results2/Feature_PCA_Male_Female_nbClust_3_complete_topVarContrib_1_21.pdf new file mode 100644 index 0000000000000000000000000000000000000000..770d0ff163cae0ecbcc1ac3fd1ab6c2d3b8008f7 Binary files /dev/null and b/code/Results2/Feature_PCA_Male_Female_nbClust_3_complete_topVarContrib_1_21.pdf differ diff --git a/code/Results2/Feature_PCA_Male_Female_nbClust_3_complete_topVarContrib_21.pdf b/code/Results2/Feature_PCA_Male_Female_nbClust_3_complete_topVarContrib_21.pdf new file mode 100644 index 0000000000000000000000000000000000000000..fffff480bbea0c798b1958177c2179510f013a68 Binary files /dev/null and b/code/Results2/Feature_PCA_Male_Female_nbClust_3_complete_topVarContrib_21.pdf differ diff --git a/code/Results2/Feature_PCA_Male_Female_nbClust_3_complete_topVarContrib_2_21.pdf b/code/Results2/Feature_PCA_Male_Female_nbClust_3_complete_topVarContrib_2_21.pdf new file mode 100644 index 0000000000000000000000000000000000000000..256509e800d4fa382b159f6d16da1b0dcd972523 Binary files /dev/null and b/code/Results2/Feature_PCA_Male_Female_nbClust_3_complete_topVarContrib_2_21.pdf differ diff --git a/code/Results2/Feature_PCA_Male_Female_nbClust_3_complete_varContribution_2.pdf b/code/Results2/Feature_PCA_Male_Female_nbClust_3_complete_varContribution_2.pdf new file mode 100644 index 0000000000000000000000000000000000000000..b2d6f6ba6ff24aac4f105ad4b97576a8b8bb7420 Binary files /dev/null and b/code/Results2/Feature_PCA_Male_Female_nbClust_3_complete_varContribution_2.pdf differ diff --git a/code/Results2/Feature_PCA_noClusters_Male_Female.pdf b/code/Results2/Feature_PCA_noClusters_Male_Female.pdf new file mode 100644 index 0000000000000000000000000000000000000000..ca66841dbfe92c97a87817bf47f2be1837c32a49 Binary files /dev/null and b/code/Results2/Feature_PCA_noClusters_Male_Female.pdf differ diff --git a/code/Results2/Feature_PCA_noClusters_Male_Female_biplot_15.pdf b/code/Results2/Feature_PCA_noClusters_Male_Female_biplot_15.pdf new file mode 100644 index 0000000000000000000000000000000000000000..f3c80c556b3fbc1f3c0242f1f4e0ab6b5f3adea1 Binary files /dev/null and b/code/Results2/Feature_PCA_noClusters_Male_Female_biplot_15.pdf differ diff --git a/code/Results2/Feature_PCA_noClusters_Male_Female_explainedVar.pdf b/code/Results2/Feature_PCA_noClusters_Male_Female_explainedVar.pdf new file mode 100644 index 0000000000000000000000000000000000000000..8c0153acd3a1650023548f33a52f0559fd48dbde Binary files /dev/null and b/code/Results2/Feature_PCA_noClusters_Male_Female_explainedVar.pdf differ diff --git a/code/Results2/Feature_PCA_noClusters_Male_Female_topVarContrib_1_21.pdf b/code/Results2/Feature_PCA_noClusters_Male_Female_topVarContrib_1_21.pdf new file mode 100644 index 0000000000000000000000000000000000000000..87cba13ceb123ef83e5964ad4c5fd0798d42e91f Binary files /dev/null and b/code/Results2/Feature_PCA_noClusters_Male_Female_topVarContrib_1_21.pdf differ diff --git a/code/Results2/Feature_PCA_noClusters_Male_Female_topVarContrib_21.pdf b/code/Results2/Feature_PCA_noClusters_Male_Female_topVarContrib_21.pdf new file mode 100644 index 0000000000000000000000000000000000000000..af4a64a39df59195b41827a793edc1d07c3afd0c Binary files /dev/null and b/code/Results2/Feature_PCA_noClusters_Male_Female_topVarContrib_21.pdf differ diff --git a/code/Results2/Feature_PCA_noClusters_Male_Female_topVarContrib_2_21.pdf b/code/Results2/Feature_PCA_noClusters_Male_Female_topVarContrib_2_21.pdf new file mode 100644 index 0000000000000000000000000000000000000000..a3752cf64803ddd84aa75267a9597ecf282d9353 Binary files /dev/null and b/code/Results2/Feature_PCA_noClusters_Male_Female_topVarContrib_2_21.pdf differ diff --git a/code/Results2/Feature_PCA_noClusters_Male_Female_varContribution_2.pdf b/code/Results2/Feature_PCA_noClusters_Male_Female_varContribution_2.pdf new file mode 100644 index 0000000000000000000000000000000000000000..ec57464318c6c066c0d5d0f0341a5adbbf7fac66 Binary files /dev/null and b/code/Results2/Feature_PCA_noClusters_Male_Female_varContribution_2.pdf differ diff --git a/code/Results2/Feature_cluster_IncidDistrib_Male_Female_nbClust_3_complete.pdf b/code/Results2/Feature_cluster_IncidDistrib_Male_Female_nbClust_3_complete.pdf new file mode 100644 index 0000000000000000000000000000000000000000..5d26f40ed0a77c18cd50a7ae38ede4c48673d2cc Binary files /dev/null and b/code/Results2/Feature_cluster_IncidDistrib_Male_Female_nbClust_3_complete.pdf differ diff --git a/code/Results2/Feature_cluster_PrevDistrib_Male_Female_nbClust_3_complete.pdf b/code/Results2/Feature_cluster_PrevDistrib_Male_Female_nbClust_3_complete.pdf new file mode 100644 index 0000000000000000000000000000000000000000..d836cb937ddd3a158cb529f1c493d1fca87adc78 Binary files /dev/null and b/code/Results2/Feature_cluster_PrevDistrib_Male_Female_nbClust_3_complete.pdf differ diff --git a/code/Results2/Feature_dend_Male_Female_complete.pdf b/code/Results2/Feature_dend_Male_Female_complete.pdf new file mode 100644 index 0000000000000000000000000000000000000000..7a09ae0c208feba51b06786a165f7677ca7dab8a Binary files /dev/null and b/code/Results2/Feature_dend_Male_Female_complete.pdf differ diff --git a/code/Results2/Feature_map_Male_Female_nbClust_3_complete.pdf b/code/Results2/Feature_map_Male_Female_nbClust_3_complete.pdf new file mode 100644 index 0000000000000000000000000000000000000000..db00a581406f3763a1f37e02e2fd40adc7a6d0f9 Binary files /dev/null and b/code/Results2/Feature_map_Male_Female_nbClust_3_complete.pdf differ diff --git a/code/Results2/countries_cluster1.csv b/code/Results2/countries_cluster1.csv new file mode 100644 index 0000000000000000000000000000000000000000..1a895f934b1c89751fd04c785fe3c9b0dda4ebe9 --- /dev/null +++ b/code/Results2/countries_cluster1.csv @@ -0,0 +1,9 @@ +"Country","Cluster" +"Burkina Faso",1 +"Chad",1 +"Ethiopia",1 +"Gambia",1 +"Mali",1 +"Niger",1 +"Senegal",1 +"Sierra Leone",1 diff --git a/code/Results2/countries_cluster2.csv b/code/Results2/countries_cluster2.csv new file mode 100644 index 0000000000000000000000000000000000000000..d7de0346c5fecdb3808e33efc97e037d093a832f --- /dev/null +++ b/code/Results2/countries_cluster2.csv @@ -0,0 +1,13 @@ +"Country","Cluster" +"Angola",2 +"Benin",2 +"Cameroon",2 +"Congo, Dem. Rep.",2 +"Congo, Rep.",2 +"Cote d'Ivoire",2 +"Gabon",2 +"Ghana",2 +"Liberia",2 +"Mozambique",2 +"Nigeria",2 +"Togo",2 diff --git a/code/Results2/countries_cluster3.csv b/code/Results2/countries_cluster3.csv new file mode 100644 index 0000000000000000000000000000000000000000..5a15495d8f98c6b5489d512434b2f652569e7613 --- /dev/null +++ b/code/Results2/countries_cluster3.csv @@ -0,0 +1,10 @@ +"Country","Cluster" +"Burundi",3 +"Kenya",3 +"Lesotho",3 +"Malawi",3 +"Namibia",3 +"Rwanda",3 +"Uganda",3 +"Zambia",3 +"Zimbabwe",3 diff --git a/code/Results2/density_var_10_3Clusters.pdf b/code/Results2/density_var_10_3Clusters.pdf new file mode 100644 index 0000000000000000000000000000000000000000..f0fadfc690962f41000aab2410993475cf1d33ae Binary files /dev/null and b/code/Results2/density_var_10_3Clusters.pdf differ diff --git a/code/Results2/density_var_11_3Clusters.pdf b/code/Results2/density_var_11_3Clusters.pdf new file mode 100644 index 0000000000000000000000000000000000000000..6c957d75531da3fd30acbca79387679214742dd2 Binary files /dev/null and b/code/Results2/density_var_11_3Clusters.pdf differ diff --git a/code/Results2/density_var_12_3Clusters.pdf b/code/Results2/density_var_12_3Clusters.pdf new file mode 100644 index 0000000000000000000000000000000000000000..36711f213283dad362c716651697f20780c52ef9 Binary files /dev/null and b/code/Results2/density_var_12_3Clusters.pdf differ diff --git a/code/Results2/density_var_13_3Clusters.pdf b/code/Results2/density_var_13_3Clusters.pdf new file mode 100644 index 0000000000000000000000000000000000000000..cf87a4193ffeb6796f2e45570fa6e0b1b727c286 Binary files /dev/null and b/code/Results2/density_var_13_3Clusters.pdf differ diff --git a/code/Results2/density_var_14_3Clusters.pdf b/code/Results2/density_var_14_3Clusters.pdf new file mode 100644 index 0000000000000000000000000000000000000000..994e31268d8fd8a8d79db8d3bfc9cbbf5955bef0 Binary files /dev/null and b/code/Results2/density_var_14_3Clusters.pdf differ diff --git a/code/Results2/density_var_15_3Clusters.pdf b/code/Results2/density_var_15_3Clusters.pdf new file mode 100644 index 0000000000000000000000000000000000000000..6c9da2b6e67a69f28ae16f44e374aab8618c4601 Binary files /dev/null and b/code/Results2/density_var_15_3Clusters.pdf differ diff --git a/code/Results2/density_var_16_3Clusters.pdf b/code/Results2/density_var_16_3Clusters.pdf new file mode 100644 index 0000000000000000000000000000000000000000..66fde2aade335eb0cd69f40c47c620d17589e002 Binary files /dev/null and b/code/Results2/density_var_16_3Clusters.pdf differ diff --git a/code/Results2/density_var_17_3Clusters.pdf b/code/Results2/density_var_17_3Clusters.pdf new file mode 100644 index 0000000000000000000000000000000000000000..3164fcc1861d4e904cf1f60c68812027549aaeca Binary files /dev/null and b/code/Results2/density_var_17_3Clusters.pdf differ diff --git a/code/Results2/density_var_18_3Clusters.pdf b/code/Results2/density_var_18_3Clusters.pdf new file mode 100644 index 0000000000000000000000000000000000000000..2b03887efd8311e148ada851fcf63cdd3725ef11 Binary files /dev/null and b/code/Results2/density_var_18_3Clusters.pdf differ diff --git a/code/Results2/density_var_19_3Clusters.pdf b/code/Results2/density_var_19_3Clusters.pdf new file mode 100644 index 0000000000000000000000000000000000000000..b3f11f487fa262985733b7b05441fcdd86eb689a Binary files /dev/null and b/code/Results2/density_var_19_3Clusters.pdf differ diff --git a/code/Results2/density_var_1_3Clusters.pdf b/code/Results2/density_var_1_3Clusters.pdf new file mode 100644 index 0000000000000000000000000000000000000000..c29a5371d93a9ade13f88efbb65d5eabe4a65ca2 Binary files /dev/null and b/code/Results2/density_var_1_3Clusters.pdf differ diff --git a/code/Results2/density_var_20_3Clusters.pdf b/code/Results2/density_var_20_3Clusters.pdf new file mode 100644 index 0000000000000000000000000000000000000000..ee201a03a5cba4cc3235f69904cb1f6dc1668eeb Binary files /dev/null and b/code/Results2/density_var_20_3Clusters.pdf differ diff --git a/code/Results2/density_var_21_3Clusters.pdf b/code/Results2/density_var_21_3Clusters.pdf new file mode 100644 index 0000000000000000000000000000000000000000..0f19a2b684854894c53ce8c1f2c2838b483d4f82 Binary files /dev/null and b/code/Results2/density_var_21_3Clusters.pdf differ diff --git a/code/Results2/density_var_22_3Clusters.pdf b/code/Results2/density_var_22_3Clusters.pdf new file mode 100644 index 0000000000000000000000000000000000000000..ef7f36b283f8951a41b476ab027133f77358cb6e Binary files /dev/null and b/code/Results2/density_var_22_3Clusters.pdf differ diff --git a/code/Results2/density_var_23_3Clusters.pdf b/code/Results2/density_var_23_3Clusters.pdf new file mode 100644 index 0000000000000000000000000000000000000000..8b6bca044ef3a42c58fad42af43353d352771e11 Binary files /dev/null and b/code/Results2/density_var_23_3Clusters.pdf differ diff --git a/code/Results2/density_var_24_3Clusters.pdf b/code/Results2/density_var_24_3Clusters.pdf new file mode 100644 index 0000000000000000000000000000000000000000..99d8198c2a1c15b4b456e2ecc5813b20f043ea66 Binary files /dev/null and b/code/Results2/density_var_24_3Clusters.pdf differ diff --git a/code/Results2/density_var_25_3Clusters.pdf b/code/Results2/density_var_25_3Clusters.pdf new file mode 100644 index 0000000000000000000000000000000000000000..76cb8ffab08de776567861e6fcbc824e418aea30 Binary files /dev/null and b/code/Results2/density_var_25_3Clusters.pdf differ diff --git a/code/Results2/density_var_26_3Clusters.pdf b/code/Results2/density_var_26_3Clusters.pdf new file mode 100644 index 0000000000000000000000000000000000000000..cab9bac33e25214c76fdb41a4235791a2200122b Binary files /dev/null and b/code/Results2/density_var_26_3Clusters.pdf differ diff --git a/code/Results2/density_var_27_3Clusters.pdf b/code/Results2/density_var_27_3Clusters.pdf new file mode 100644 index 0000000000000000000000000000000000000000..da8824819f2c49d9b9970d3004a6ea1fa7c63de0 Binary files /dev/null and b/code/Results2/density_var_27_3Clusters.pdf differ diff --git a/code/Results2/density_var_28_3Clusters.pdf b/code/Results2/density_var_28_3Clusters.pdf new file mode 100644 index 0000000000000000000000000000000000000000..ad6d97f0bf06c5f136233c14d3162fb5c8278c01 Binary files /dev/null and b/code/Results2/density_var_28_3Clusters.pdf differ diff --git a/code/Results2/density_var_29_3Clusters.pdf b/code/Results2/density_var_29_3Clusters.pdf new file mode 100644 index 0000000000000000000000000000000000000000..34bdfa5e94376abb3ca161863ce649d66bb87c77 Binary files /dev/null and b/code/Results2/density_var_29_3Clusters.pdf differ diff --git a/code/Results2/density_var_2_3Clusters.pdf b/code/Results2/density_var_2_3Clusters.pdf new file mode 100644 index 0000000000000000000000000000000000000000..ba624e096a732a185100ff7a20f21e3e1b2118c3 Binary files /dev/null and b/code/Results2/density_var_2_3Clusters.pdf differ diff --git a/code/Results2/density_var_30_3Clusters.pdf b/code/Results2/density_var_30_3Clusters.pdf new file mode 100644 index 0000000000000000000000000000000000000000..cfa7b69ad72672100b4b72d93ef591801cb0e5e5 Binary files /dev/null and b/code/Results2/density_var_30_3Clusters.pdf differ diff --git a/code/Results2/density_var_31_3Clusters.pdf b/code/Results2/density_var_31_3Clusters.pdf new file mode 100644 index 0000000000000000000000000000000000000000..417c1597938437e3752d231a148d2ebab3d4375d Binary files /dev/null and b/code/Results2/density_var_31_3Clusters.pdf differ diff --git a/code/Results2/density_var_32_3Clusters.pdf b/code/Results2/density_var_32_3Clusters.pdf new file mode 100644 index 0000000000000000000000000000000000000000..1a7eea5c047f03b1d1c77abf480385343ca69b5d Binary files /dev/null and b/code/Results2/density_var_32_3Clusters.pdf differ diff --git a/code/Results2/density_var_33_3Clusters.pdf b/code/Results2/density_var_33_3Clusters.pdf new file mode 100644 index 0000000000000000000000000000000000000000..827c7ea0ab9615327b646534140e4c636c5f99f5 Binary files /dev/null and b/code/Results2/density_var_33_3Clusters.pdf differ diff --git a/code/Results2/density_var_34_3Clusters.pdf b/code/Results2/density_var_34_3Clusters.pdf new file mode 100644 index 0000000000000000000000000000000000000000..02d529560b444449478d79d59202185ce75f2662 Binary files /dev/null and b/code/Results2/density_var_34_3Clusters.pdf differ diff --git a/code/Results2/density_var_35_3Clusters.pdf b/code/Results2/density_var_35_3Clusters.pdf new file mode 100644 index 0000000000000000000000000000000000000000..f2190759272aa958ce6520665756f6fd8d537768 Binary files /dev/null and b/code/Results2/density_var_35_3Clusters.pdf differ diff --git a/code/Results2/density_var_36_3Clusters.pdf b/code/Results2/density_var_36_3Clusters.pdf new file mode 100644 index 0000000000000000000000000000000000000000..9b0e3ebeb244eb554ce6d744cea1ec1627893ac4 Binary files /dev/null and b/code/Results2/density_var_36_3Clusters.pdf differ diff --git a/code/Results2/density_var_37_3Clusters.pdf b/code/Results2/density_var_37_3Clusters.pdf new file mode 100644 index 0000000000000000000000000000000000000000..9226c9e040eb9142832babe34b401c1ef5a88c09 Binary files /dev/null and b/code/Results2/density_var_37_3Clusters.pdf differ diff --git a/code/Results2/density_var_38_3Clusters.pdf b/code/Results2/density_var_38_3Clusters.pdf new file mode 100644 index 0000000000000000000000000000000000000000..dcaf52d8d35ecfb98bc7b93eeb45ac74d7c34b59 Binary files /dev/null and b/code/Results2/density_var_38_3Clusters.pdf differ diff --git a/code/Results2/density_var_39_3Clusters.pdf b/code/Results2/density_var_39_3Clusters.pdf new file mode 100644 index 0000000000000000000000000000000000000000..4b9618fd424383062011ffd821b71d3aa0313616 Binary files /dev/null and b/code/Results2/density_var_39_3Clusters.pdf differ diff --git a/code/Results2/density_var_3_3Clusters.pdf b/code/Results2/density_var_3_3Clusters.pdf new file mode 100644 index 0000000000000000000000000000000000000000..38fec3d7f1347e3b479a3562fdcd9a0539a2f0de Binary files /dev/null and b/code/Results2/density_var_3_3Clusters.pdf differ diff --git a/code/Results2/density_var_40_3Clusters.pdf b/code/Results2/density_var_40_3Clusters.pdf new file mode 100644 index 0000000000000000000000000000000000000000..1346fbeb6b7f7204bc6a10ea592602bffddf15e3 Binary files /dev/null and b/code/Results2/density_var_40_3Clusters.pdf differ diff --git a/code/Results2/density_var_41_3Clusters.pdf b/code/Results2/density_var_41_3Clusters.pdf new file mode 100644 index 0000000000000000000000000000000000000000..23465ee424cd64414d826eda8da83230d121b2fc Binary files /dev/null and b/code/Results2/density_var_41_3Clusters.pdf differ diff --git a/code/Results2/density_var_42_3Clusters.pdf b/code/Results2/density_var_42_3Clusters.pdf new file mode 100644 index 0000000000000000000000000000000000000000..dee7eeba977746a3caefc30ca0b10fb30ed0f8a3 Binary files /dev/null and b/code/Results2/density_var_42_3Clusters.pdf differ diff --git a/code/Results2/density_var_43_3Clusters.pdf b/code/Results2/density_var_43_3Clusters.pdf new file mode 100644 index 0000000000000000000000000000000000000000..984e3ad39e86c55f26ad62ebd477311701f7ca52 Binary files /dev/null and b/code/Results2/density_var_43_3Clusters.pdf differ diff --git a/code/Results2/density_var_44_3Clusters.pdf b/code/Results2/density_var_44_3Clusters.pdf new file mode 100644 index 0000000000000000000000000000000000000000..aa646335bc65eb513d17ecdb69ae9ff13b90a588 Binary files /dev/null and b/code/Results2/density_var_44_3Clusters.pdf differ diff --git a/code/Results2/density_var_45_3Clusters.pdf b/code/Results2/density_var_45_3Clusters.pdf new file mode 100644 index 0000000000000000000000000000000000000000..8835ead2b4ec09938c16f7b1b1fa3e99a167a2a6 Binary files /dev/null and b/code/Results2/density_var_45_3Clusters.pdf differ diff --git a/code/Results2/density_var_46_3Clusters.pdf b/code/Results2/density_var_46_3Clusters.pdf new file mode 100644 index 0000000000000000000000000000000000000000..8347ee3c9531c558a217165512af1e8c4d973bc5 Binary files /dev/null and b/code/Results2/density_var_46_3Clusters.pdf differ diff --git a/code/Results2/density_var_47_3Clusters.pdf b/code/Results2/density_var_47_3Clusters.pdf new file mode 100644 index 0000000000000000000000000000000000000000..2d76aaa36068e0d378e8e4984c668e03be5f6dc6 Binary files /dev/null and b/code/Results2/density_var_47_3Clusters.pdf differ diff --git a/code/Results2/density_var_48_3Clusters.pdf b/code/Results2/density_var_48_3Clusters.pdf new file mode 100644 index 0000000000000000000000000000000000000000..3bbc645945f8f38bc612edef33a5dea40258acf3 Binary files /dev/null and b/code/Results2/density_var_48_3Clusters.pdf differ diff --git a/code/Results2/density_var_4_3Clusters.pdf b/code/Results2/density_var_4_3Clusters.pdf new file mode 100644 index 0000000000000000000000000000000000000000..cdf76e907b762eb03ede7bc3fe0504288ce55888 Binary files /dev/null and b/code/Results2/density_var_4_3Clusters.pdf differ diff --git a/code/Results2/density_var_5_3Clusters.pdf b/code/Results2/density_var_5_3Clusters.pdf new file mode 100644 index 0000000000000000000000000000000000000000..b9adb305b32a57efd3dbe48c6857c9823c97d40f Binary files /dev/null and b/code/Results2/density_var_5_3Clusters.pdf differ diff --git a/code/Results2/density_var_6_3Clusters.pdf b/code/Results2/density_var_6_3Clusters.pdf new file mode 100644 index 0000000000000000000000000000000000000000..7e11a056dc9ca25b30dfc2f8ec489634583c7677 Binary files /dev/null and b/code/Results2/density_var_6_3Clusters.pdf differ diff --git a/code/Results2/density_var_7_3Clusters.pdf b/code/Results2/density_var_7_3Clusters.pdf new file mode 100644 index 0000000000000000000000000000000000000000..3341726d253d9ce1da0e3f04e95cf344908f6629 Binary files /dev/null and b/code/Results2/density_var_7_3Clusters.pdf differ diff --git a/code/Results2/density_var_8_3Clusters.pdf b/code/Results2/density_var_8_3Clusters.pdf new file mode 100644 index 0000000000000000000000000000000000000000..a7e80a12caef64f6e8e13f16ba3cd85ddf70a14f Binary files /dev/null and b/code/Results2/density_var_8_3Clusters.pdf differ diff --git a/code/Results2/density_var_9_3Clusters.pdf b/code/Results2/density_var_9_3Clusters.pdf new file mode 100644 index 0000000000000000000000000000000000000000..3f4fc64343e252cf807923c2dc0ded1975114faf Binary files /dev/null and b/code/Results2/density_var_9_3Clusters.pdf differ diff --git a/code/Results2/incidenceHistogram_2016.pdf b/code/Results2/incidenceHistogram_2016.pdf new file mode 100644 index 0000000000000000000000000000000000000000..bbe0c20fa0bbacd26fdcc6bf4431de76557f968f Binary files /dev/null and b/code/Results2/incidenceHistogram_2016.pdf differ diff --git a/code/Results2/incidenceMap_2016_fixedWidth_40.pdf b/code/Results2/incidenceMap_2016_fixedWidth_40.pdf new file mode 100644 index 0000000000000000000000000000000000000000..15a4e81a76ba79272f806c1a03fa55173e072573 Binary files /dev/null and b/code/Results2/incidenceMap_2016_fixedWidth_40.pdf differ diff --git a/code/Results2/map_var_1.pdf b/code/Results2/map_var_1.pdf new file mode 100644 index 0000000000000000000000000000000000000000..35b9eb9cd941d278008adb94a210981a335d3755 Binary files /dev/null and b/code/Results2/map_var_1.pdf differ diff --git a/code/Results2/map_var_10.pdf b/code/Results2/map_var_10.pdf new file mode 100644 index 0000000000000000000000000000000000000000..5db5662955765b5d538379cfcd3f357722222902 Binary files /dev/null and b/code/Results2/map_var_10.pdf differ diff --git a/code/Results2/map_var_11.pdf b/code/Results2/map_var_11.pdf new file mode 100644 index 0000000000000000000000000000000000000000..cd230fead329a54ff69ac2cf3b370741541594bc Binary files /dev/null and b/code/Results2/map_var_11.pdf differ diff --git a/code/Results2/map_var_12.pdf b/code/Results2/map_var_12.pdf new file mode 100644 index 0000000000000000000000000000000000000000..b52387f1bcf7bd288e30394c862878f8f3fa9ee8 Binary files /dev/null and b/code/Results2/map_var_12.pdf differ diff --git a/code/Results2/map_var_13.pdf b/code/Results2/map_var_13.pdf new file mode 100644 index 0000000000000000000000000000000000000000..fb82886a3e096341c20018672f8076aa51713665 Binary files /dev/null and b/code/Results2/map_var_13.pdf differ diff --git a/code/Results2/map_var_14.pdf b/code/Results2/map_var_14.pdf new file mode 100644 index 0000000000000000000000000000000000000000..0a660348d7bbc63a782df7d1d0ceac227bf6eeac Binary files /dev/null and b/code/Results2/map_var_14.pdf differ diff --git a/code/Results2/map_var_15.pdf b/code/Results2/map_var_15.pdf new file mode 100644 index 0000000000000000000000000000000000000000..155ec660f3761cdc0ae3e9bcf1e65617b061cef5 Binary files /dev/null and b/code/Results2/map_var_15.pdf differ diff --git a/code/Results2/map_var_16.pdf b/code/Results2/map_var_16.pdf new file mode 100644 index 0000000000000000000000000000000000000000..3644143ce3d8bd34449120e64fc1f24e18799e2f Binary files /dev/null and b/code/Results2/map_var_16.pdf differ diff --git a/code/Results2/map_var_17.pdf b/code/Results2/map_var_17.pdf new file mode 100644 index 0000000000000000000000000000000000000000..68a7cdce030dec28751ba76c15bfea4c8a2477e1 Binary files /dev/null and b/code/Results2/map_var_17.pdf differ diff --git a/code/Results2/map_var_18.pdf b/code/Results2/map_var_18.pdf new file mode 100644 index 0000000000000000000000000000000000000000..5ed86c7bb63b1e6ce4b3c559765f057c392ee56c Binary files /dev/null and b/code/Results2/map_var_18.pdf differ diff --git a/code/Results2/map_var_19.pdf b/code/Results2/map_var_19.pdf new file mode 100644 index 0000000000000000000000000000000000000000..20d0eeb6cd5d89cb4e16f3375914ae55c4c63ce6 Binary files /dev/null and b/code/Results2/map_var_19.pdf differ diff --git a/code/Results2/map_var_2.pdf b/code/Results2/map_var_2.pdf new file mode 100644 index 0000000000000000000000000000000000000000..037132886932ca200699d3fc3bebc5c5f9800edf Binary files /dev/null and b/code/Results2/map_var_2.pdf differ diff --git a/code/Results2/map_var_20.pdf b/code/Results2/map_var_20.pdf new file mode 100644 index 0000000000000000000000000000000000000000..19f8c3d560af5fb13f6dd3ad6ef4f2a71e19e06f Binary files /dev/null and b/code/Results2/map_var_20.pdf differ diff --git a/code/Results2/map_var_21.pdf b/code/Results2/map_var_21.pdf new file mode 100644 index 0000000000000000000000000000000000000000..934c6d5d00226c3184a3c8149454c4aec7eb51e3 Binary files /dev/null and b/code/Results2/map_var_21.pdf differ diff --git a/code/Results2/map_var_22.pdf b/code/Results2/map_var_22.pdf new file mode 100644 index 0000000000000000000000000000000000000000..ccf4a2fc8159d957e91a8ba7a35ce81e8d4e9f11 Binary files /dev/null and b/code/Results2/map_var_22.pdf differ diff --git a/code/Results2/map_var_23.pdf b/code/Results2/map_var_23.pdf new file mode 100644 index 0000000000000000000000000000000000000000..aaf2828fbf72e9591b8749b638cf088a8d77a35e Binary files /dev/null and b/code/Results2/map_var_23.pdf differ diff --git a/code/Results2/map_var_24.pdf b/code/Results2/map_var_24.pdf new file mode 100644 index 0000000000000000000000000000000000000000..1241e90cf05f8a0f3b7424d03212681f8262b6f7 Binary files /dev/null and b/code/Results2/map_var_24.pdf differ diff --git a/code/Results2/map_var_25.pdf b/code/Results2/map_var_25.pdf new file mode 100644 index 0000000000000000000000000000000000000000..1196f8975fa07e0ed7a2b13081abe98965623a23 Binary files /dev/null and b/code/Results2/map_var_25.pdf differ diff --git a/code/Results2/map_var_26.pdf b/code/Results2/map_var_26.pdf new file mode 100644 index 0000000000000000000000000000000000000000..801ba3185515def8638e7f2f710179fd38afb500 Binary files /dev/null and b/code/Results2/map_var_26.pdf differ diff --git a/code/Results2/map_var_27.pdf b/code/Results2/map_var_27.pdf new file mode 100644 index 0000000000000000000000000000000000000000..d41a663f6b735eaec9a64d79b327f3c405831aae Binary files /dev/null and b/code/Results2/map_var_27.pdf differ diff --git a/code/Results2/map_var_28.pdf b/code/Results2/map_var_28.pdf new file mode 100644 index 0000000000000000000000000000000000000000..18b36a3b7b2006d1587999934c76c305803947de Binary files /dev/null and b/code/Results2/map_var_28.pdf differ diff --git a/code/Results2/map_var_29.pdf b/code/Results2/map_var_29.pdf new file mode 100644 index 0000000000000000000000000000000000000000..3b84161e7bbab4ac4aa0a094b4d94d5290275245 Binary files /dev/null and b/code/Results2/map_var_29.pdf differ diff --git a/code/Results2/map_var_3.pdf b/code/Results2/map_var_3.pdf new file mode 100644 index 0000000000000000000000000000000000000000..d7897431c102a0faa6c8ac7d8f3e240dad27dd07 Binary files /dev/null and b/code/Results2/map_var_3.pdf differ diff --git a/code/Results2/map_var_30.pdf b/code/Results2/map_var_30.pdf new file mode 100644 index 0000000000000000000000000000000000000000..de0cf323ee00a48d3e41f8e70a9f5acfaebe3520 Binary files /dev/null and b/code/Results2/map_var_30.pdf differ diff --git a/code/Results2/map_var_31.pdf b/code/Results2/map_var_31.pdf new file mode 100644 index 0000000000000000000000000000000000000000..d3460b3ac9f4bdbed2b83f2c550faeace7daa6e3 Binary files /dev/null and b/code/Results2/map_var_31.pdf differ diff --git a/code/Results2/map_var_32.pdf b/code/Results2/map_var_32.pdf new file mode 100644 index 0000000000000000000000000000000000000000..fa64d6e482a23ac5925823349513a679c630df5e Binary files /dev/null and b/code/Results2/map_var_32.pdf differ diff --git a/code/Results2/map_var_33.pdf b/code/Results2/map_var_33.pdf new file mode 100644 index 0000000000000000000000000000000000000000..7e76cfeef32263c973059501f67e2d7539b2adba Binary files /dev/null and b/code/Results2/map_var_33.pdf differ diff --git a/code/Results2/map_var_34.pdf b/code/Results2/map_var_34.pdf new file mode 100644 index 0000000000000000000000000000000000000000..c694c33a5c6ad4ca09719ced487ba8c9c5541a33 Binary files /dev/null and b/code/Results2/map_var_34.pdf differ diff --git a/code/Results2/map_var_35.pdf b/code/Results2/map_var_35.pdf new file mode 100644 index 0000000000000000000000000000000000000000..b59b0cc0f4022e40005f04f06022e41bbdbdebf3 Binary files /dev/null and b/code/Results2/map_var_35.pdf differ diff --git a/code/Results2/map_var_36.pdf b/code/Results2/map_var_36.pdf new file mode 100644 index 0000000000000000000000000000000000000000..f31ece37dd5a9a773712e9c919fa0c2c1fe8ccde Binary files /dev/null and b/code/Results2/map_var_36.pdf differ diff --git a/code/Results2/map_var_37.pdf b/code/Results2/map_var_37.pdf new file mode 100644 index 0000000000000000000000000000000000000000..29e84db27edd6caf3c99bd2299e4ceee7aa53c91 Binary files /dev/null and b/code/Results2/map_var_37.pdf differ diff --git a/code/Results2/map_var_38.pdf b/code/Results2/map_var_38.pdf new file mode 100644 index 0000000000000000000000000000000000000000..341e0f2bbb02c9181292ae1d11b9c741fb6cfbfd Binary files /dev/null and b/code/Results2/map_var_38.pdf differ diff --git a/code/Results2/map_var_39.pdf b/code/Results2/map_var_39.pdf new file mode 100644 index 0000000000000000000000000000000000000000..42985be06d157f7d8f1bee22ed0621c0a2afbfc0 Binary files /dev/null and b/code/Results2/map_var_39.pdf differ diff --git a/code/Results2/map_var_4.pdf b/code/Results2/map_var_4.pdf new file mode 100644 index 0000000000000000000000000000000000000000..0bbd9849e5d65cf9c4acfef7d102846616118d60 Binary files /dev/null and b/code/Results2/map_var_4.pdf differ diff --git a/code/Results2/map_var_40.pdf b/code/Results2/map_var_40.pdf new file mode 100644 index 0000000000000000000000000000000000000000..706674d38a2ab12952d47fac619821637b2644b0 Binary files /dev/null and b/code/Results2/map_var_40.pdf differ diff --git a/code/Results2/map_var_41.pdf b/code/Results2/map_var_41.pdf new file mode 100644 index 0000000000000000000000000000000000000000..e166b798ef1ac4c4c4b1712f9f4db9b32eb55750 Binary files /dev/null and b/code/Results2/map_var_41.pdf differ diff --git a/code/Results2/map_var_42.pdf b/code/Results2/map_var_42.pdf new file mode 100644 index 0000000000000000000000000000000000000000..ed79fd85f4102422d51d41f6dc8852f0dd381d9b Binary files /dev/null and b/code/Results2/map_var_42.pdf differ diff --git a/code/Results2/map_var_43.pdf b/code/Results2/map_var_43.pdf new file mode 100644 index 0000000000000000000000000000000000000000..73f9a6379a1495f83e76b781c7de5326db4544a1 Binary files /dev/null and b/code/Results2/map_var_43.pdf differ diff --git a/code/Results2/map_var_44.pdf b/code/Results2/map_var_44.pdf new file mode 100644 index 0000000000000000000000000000000000000000..2bd0cfd1d667f5c1f4f01dc3ad127070a1cf8fd8 Binary files /dev/null and b/code/Results2/map_var_44.pdf differ diff --git a/code/Results2/map_var_45.pdf b/code/Results2/map_var_45.pdf new file mode 100644 index 0000000000000000000000000000000000000000..4ac9965b3cab60aa74a3d5024a04ecff327546ab Binary files /dev/null and b/code/Results2/map_var_45.pdf differ diff --git a/code/Results2/map_var_46.pdf b/code/Results2/map_var_46.pdf new file mode 100644 index 0000000000000000000000000000000000000000..67d59cda9fa81a737177af39261a51c9c34d91e7 Binary files /dev/null and b/code/Results2/map_var_46.pdf differ diff --git a/code/Results2/map_var_47.pdf b/code/Results2/map_var_47.pdf new file mode 100644 index 0000000000000000000000000000000000000000..b3844058d6f6548ba7936f1b8ce73c93ad8cdf77 Binary files /dev/null and b/code/Results2/map_var_47.pdf differ diff --git a/code/Results2/map_var_48.pdf b/code/Results2/map_var_48.pdf new file mode 100644 index 0000000000000000000000000000000000000000..eb0c99da82ff0cbf9cacf6b9ad1db05434c4ea3b Binary files /dev/null and b/code/Results2/map_var_48.pdf differ diff --git a/code/Results2/map_var_5.pdf b/code/Results2/map_var_5.pdf new file mode 100644 index 0000000000000000000000000000000000000000..017b96d6f4b52a9867550914b8fd5955c18fd8fc Binary files /dev/null and b/code/Results2/map_var_5.pdf differ diff --git a/code/Results2/map_var_6.pdf b/code/Results2/map_var_6.pdf new file mode 100644 index 0000000000000000000000000000000000000000..8c2708e8d08362bc052b08e9fcf879d67c578cf5 Binary files /dev/null and b/code/Results2/map_var_6.pdf differ diff --git a/code/Results2/map_var_7.pdf b/code/Results2/map_var_7.pdf new file mode 100644 index 0000000000000000000000000000000000000000..575f1bde2f15932de3430a368d5dad1276c71bd5 Binary files /dev/null and b/code/Results2/map_var_7.pdf differ diff --git a/code/Results2/map_var_8.pdf b/code/Results2/map_var_8.pdf new file mode 100644 index 0000000000000000000000000000000000000000..8ede682d6a2c13a9c94d59b5dad542727717b0a3 Binary files /dev/null and b/code/Results2/map_var_8.pdf differ diff --git a/code/Results2/map_var_9.pdf b/code/Results2/map_var_9.pdf new file mode 100644 index 0000000000000000000000000000000000000000..2cd1647a2a290f33fc7cd0c5cf9121f4c6662aec Binary files /dev/null and b/code/Results2/map_var_9.pdf differ diff --git a/code/Results2/prevalenceHistogram_2016.pdf b/code/Results2/prevalenceHistogram_2016.pdf new file mode 100644 index 0000000000000000000000000000000000000000..ac37873ce7160e894ebb3f931b15c6c6e53d5683 Binary files /dev/null and b/code/Results2/prevalenceHistogram_2016.pdf differ diff --git a/code/Results2/prevalenceMap_2016_fixedWidth_40.pdf b/code/Results2/prevalenceMap_2016_fixedWidth_40.pdf new file mode 100644 index 0000000000000000000000000000000000000000..633b85b577dcd0dd830e75c6f01ecc28184478be Binary files /dev/null and b/code/Results2/prevalenceMap_2016_fixedWidth_40.pdf differ diff --git a/code/featuresClustering.R b/code/featuresClustering.R index 166ba67e40abf03e8dfbcac77085ca4546431fd0..2ec49fefc049644ba687063e1a7da7df25fdd139 100644 --- a/code/featuresClustering.R +++ b/code/featuresClustering.R @@ -28,7 +28,7 @@ source("code/plotFeatureMaps.R") # Clustering countries based on features. -runFeaturesClustering = function(additionalDataFile=NULL, cutReference, cutRefValue, clusteringMethod = "complete", incidenceYear=NULL, scale = FALSE, data_sheetName = 'Data'){ +runFeaturesClustering = function(additionalDataFile=NULL, cutReference, cutRefValue, clusteringMethod = "complete", incidenceYear=NULL, scale = FALSE, data_sheetName = 'Data', res_dir= "code/Results"){ print("runFeaturesClustering(...)") print(paste("additionalDataFile = ",additionalDataFile)) print(paste("cutReference = ",cutReference)) @@ -52,7 +52,8 @@ runFeaturesClustering = function(additionalDataFile=NULL, cutReference, cutRefVa M = M[,2:ncol(M)] rownames(M) = countryNames # Set directory where results must be saved. - mainDir = "code/Results" + #mainDir = "code/Results" + mainDir=res_dir dir.create(mainDir) if (scale){ M = scale(M) diff --git a/code/main_script.R b/code/main_script.R index f6fd38edb996e4b1edc499f95e9f9b64baae0db8..3109d82bae0dc2694b614f90a1f2028334114727 100644 --- a/code/main_script.R +++ b/code/main_script.R @@ -24,7 +24,7 @@ file_StatCompiler_data = "data/original_aziza/all_SSA_var_Religion_ART_2015_GINI # Run clustering with given number of clusters. nbClusters = 3 -runFeaturesClustering(file_StatCompiler_data,"nbClust",nbClusters,incidenceYear=2016,data_sheetName = "Data_LongVar") +runFeaturesClustering(file_StatCompiler_data,"nbClust",nbClusters,incidenceYear=2016,data_sheetName = "Data_LongVar", res_dir="code/Results2") # Run clustering with a range of cluster numbers min_nbClusters = 2