diff --git a/Dockerfile b/Dockerfile index e80abd484d838690580d7bf9b1c258e66a0777d2..f7fe884a578485471a569d5a35f5549aeb76fe4f 100644 --- a/Dockerfile +++ b/Dockerfile @@ -1,7 +1,8 @@ FROM renku/renkulab:renku0.9.1-py3.7-0.5.2 -# Uncomment and adapt if code is to be included in the image +# For some reason need to be root to install from symlink COPY src /code/src +RUN ln -s /code/src # Uncomment and adapt if your R or python packages require extra linux (ubuntu) software # e.g. the following installs apt-utils and vim; each pkg on its own line, all lines @@ -15,8 +16,10 @@ COPY src /code/src # USER ${NB_USER} # install the python dependencies +USER root COPY requirements.txt environment.yml /tmp/ RUN conda env update -q -f /tmp/environment.yml && \ /opt/conda/bin/pip install -r /tmp/requirements.txt && \ conda clean -y --all && \ conda env export -n "root" +USER ${NB_USER}