diff --git a/.renku/workflow/f50f47baf99847aa838f96c705258910.cwl b/.renku/workflow/f50f47baf99847aa838f96c705258910.cwl
new file mode 100644
index 0000000000000000000000000000000000000000..0e74f62c250e0a5761b975f82a0aaaedd400c645
--- /dev/null
+++ b/.renku/workflow/f50f47baf99847aa838f96c705258910.cwl
@@ -0,0 +1,120 @@
+class: Workflow
+cwlVersion: v1.0
+hints: []
+inputs:
+ input_1:
+ default: states-metadata.json
+ streamable: false
+ type: string
+ input_2:
+ default: out_folder
+ streamable: false
+ type: string
+ input_3:
+ default: data/covidtracking
+ streamable: false
+ type: string
+ input_4:
+ default:
+ class: File
+ path: ../../notebooks/process/download-covidtracking-data.ipynb
+ streamable: false
+ type: File
+ input_5:
+ default: runs/download-covidtracking-data.runs.ipynb
+ streamable: false
+ type: string
+ input_6:
+ default: states-daily.json
+ streamable: false
+ type: string
+outputs:
+ output_0:
+ outputSource: step_2/output_1
+ streamable: false
+ type: Directory
+ output_2:
+ outputSource: step_2/output_0
+ streamable: false
+ type: File
+requirements: []
+steps:
+ step_1:
+ in:
+ filename: input_1
+ input_directory: step_2/output_1
+ out:
+ - output_file
+ run:
+ arguments: []
+ baseCommand:
+ - 'true'
+ class: CommandLineTool
+ cwlVersion: v1.0
+ hints: []
+ inputs:
+ filename:
+ default: states-metadata.json
+ streamable: false
+ type: string
+ input_directory:
+ streamable: false
+ type: Directory
+ outputs:
+ output_file:
+ outputBinding:
+ glob: $(inputs.filename)
+ streamable: false
+ type: File
+ permanentFailCodes: []
+ requirements:
+ - &id001
+ class: InlineJavascriptRequirement
+ - &id002
+ class: InitialWorkDirRequirement
+ listing: $(inputs.input_directory.listing)
+ successCodes: []
+ temporaryFailCodes: []
+ step_2:
+ in:
+ input_1: input_2
+ input_2: input_3
+ input_3: input_4
+ input_4: input_5
+ out:
+ - output_0
+ - output_1
+ run: a17d560c41a54f5aa307ce5f3c5effe5_papermill.cwl
+ step_3:
+ in:
+ filename: input_6
+ input_directory: step_2/output_1
+ out:
+ - output_file
+ run:
+ arguments: []
+ baseCommand:
+ - 'true'
+ class: CommandLineTool
+ cwlVersion: v1.0
+ hints: []
+ inputs:
+ filename:
+ default: states-daily.json
+ streamable: false
+ type: string
+ input_directory:
+ streamable: false
+ type: Directory
+ outputs:
+ output_file:
+ outputBinding:
+ glob: $(inputs.filename)
+ streamable: false
+ type: File
+ permanentFailCodes: []
+ requirements:
+ - *id001
+ - *id002
+ successCodes: []
+ temporaryFailCodes: []
diff --git a/data/covidtracking/states-metadata.json b/data/covidtracking/states-metadata.json
index d9f3ca9c20ae7203925d4dcef332bc77a6e5b7e3..3e63c62941ff156f8e95f8ce0f1522ae00ead654 100644
--- a/data/covidtracking/states-metadata.json
+++ b/data/covidtracking/states-metadata.json
@@ -1,3 +1,3 @@
version https://git-lfs.github.com/spec/v1
-oid sha256:5d977ad0a4ed8f67000b0489996ac94d77fbe00371c702ee38c7696776a4e68c
-size 27032
+oid sha256:a2de8c05ab448b3f0eb44787afeb88b313332f50271c9a76bba6c7949ee90520
+size 27083
diff --git a/runs/download-covidtracking-data.runs.ipynb b/runs/download-covidtracking-data.runs.ipynb
index 5b8ae1d3de45f00fffe82179c0393125624254df..93cbcae5c2d4607e36101aa9a75820b95d6edf60 100644
--- a/runs/download-covidtracking-data.runs.ipynb
+++ b/runs/download-covidtracking-data.runs.ipynb
@@ -5,10 +5,10 @@
"execution_count": 1,
"metadata": {
"papermill": {
- "duration": 0.510563,
- "end_time": "2020-03-28T08:23:22.828576",
+ "duration": 4.191695,
+ "end_time": "2020-03-28T20:12:31.515945",
"exception": false,
- "start_time": "2020-03-28T08:23:22.318013",
+ "start_time": "2020-03-28T20:12:27.324250",
"status": "completed"
},
"tags": []
@@ -25,10 +25,10 @@
"execution_count": 2,
"metadata": {
"papermill": {
- "duration": 0.016784,
- "end_time": "2020-03-28T08:23:22.855238",
+ "duration": 0.017506,
+ "end_time": "2020-03-28T20:12:31.548018",
"exception": false,
- "start_time": "2020-03-28T08:23:22.838454",
+ "start_time": "2020-03-28T20:12:31.530512",
"status": "completed"
},
"tags": [
@@ -46,10 +46,10 @@
"execution_count": 3,
"metadata": {
"papermill": {
- "duration": 0.021893,
- "end_time": "2020-03-28T08:23:22.884664",
+ "duration": 0.013182,
+ "end_time": "2020-03-28T20:12:31.569039",
"exception": false,
- "start_time": "2020-03-28T08:23:22.862771",
+ "start_time": "2020-03-28T20:12:31.555857",
"status": "completed"
},
"tags": [
@@ -59,7 +59,7 @@
"outputs": [],
"source": [
"# Parameters\n",
- "PAPERMILL_INPUT_PATH = \"/tmp/lrv5vlu8/notebooks/process/download-covidtracking-data.ipynb\"\n",
+ "PAPERMILL_INPUT_PATH = \"/tmp/wjmbqwda/notebooks/process/download-covidtracking-data.ipynb\"\n",
"PAPERMILL_OUTPUT_PATH = \"runs/download-covidtracking-data.runs.ipynb\"\n",
"out_folder = \"data/covidtracking\"\n"
]
@@ -68,10 +68,10 @@
"cell_type": "markdown",
"metadata": {
"papermill": {
- "duration": 0.006745,
- "end_time": "2020-03-28T08:23:22.903069",
+ "duration": 0.005359,
+ "end_time": "2020-03-28T20:12:31.579757",
"exception": false,
- "start_time": "2020-03-28T08:23:22.896324",
+ "start_time": "2020-03-28T20:12:31.574398",
"status": "completed"
},
"tags": []
@@ -87,10 +87,10 @@
"execution_count": 4,
"metadata": {
"papermill": {
- "duration": 0.232971,
- "end_time": "2020-03-28T08:23:23.143017",
+ "duration": 0.245025,
+ "end_time": "2020-03-28T20:12:31.830246",
"exception": false,
- "start_time": "2020-03-28T08:23:22.910046",
+ "start_time": "2020-03-28T20:12:31.585221",
"status": "completed"
},
"tags": []
@@ -107,10 +107,10 @@
"execution_count": 5,
"metadata": {
"papermill": {
- "duration": 0.017333,
- "end_time": "2020-03-28T08:23:23.171508",
+ "duration": 0.022778,
+ "end_time": "2020-03-28T20:12:31.866438",
"exception": false,
- "start_time": "2020-03-28T08:23:23.154175",
+ "start_time": "2020-03-28T20:12:31.843660",
"status": "completed"
},
"tags": []
@@ -129,10 +129,10 @@
"execution_count": 6,
"metadata": {
"papermill": {
- "duration": 0.063441,
- "end_time": "2020-03-28T08:23:23.242653",
+ "duration": 0.047291,
+ "end_time": "2020-03-28T20:12:31.922933",
"exception": false,
- "start_time": "2020-03-28T08:23:23.179212",
+ "start_time": "2020-03-28T20:12:31.875642",
"status": "completed"
},
"tags": []
@@ -246,10 +246,10 @@
"cell_type": "markdown",
"metadata": {
"papermill": {
- "duration": 0.007652,
- "end_time": "2020-03-28T08:23:23.259216",
+ "duration": 0.006017,
+ "end_time": "2020-03-28T20:12:31.935616",
"exception": false,
- "start_time": "2020-03-28T08:23:23.251564",
+ "start_time": "2020-03-28T20:12:31.929599",
"status": "completed"
},
"tags": []
@@ -263,10 +263,10 @@
"execution_count": 7,
"metadata": {
"papermill": {
- "duration": 0.238704,
- "end_time": "2020-03-28T08:23:23.505934",
+ "duration": 0.22026,
+ "end_time": "2020-03-28T20:12:32.162099",
"exception": false,
- "start_time": "2020-03-28T08:23:23.267230",
+ "start_time": "2020-03-28T20:12:31.941839",
"status": "completed"
},
"tags": []
@@ -283,10 +283,10 @@
"execution_count": 8,
"metadata": {
"papermill": {
- "duration": 0.022386,
- "end_time": "2020-03-28T08:23:23.536735",
+ "duration": 0.024935,
+ "end_time": "2020-03-28T20:12:32.202190",
"exception": false,
- "start_time": "2020-03-28T08:23:23.514349",
+ "start_time": "2020-03-28T20:12:32.177255",
"status": "completed"
},
"tags": []
@@ -305,10 +305,10 @@
"execution_count": 9,
"metadata": {
"papermill": {
- "duration": 0.074418,
- "end_time": "2020-03-28T08:23:23.620961",
+ "duration": 0.067003,
+ "end_time": "2020-03-28T20:12:32.277906",
"exception": false,
- "start_time": "2020-03-28T08:23:23.546543",
+ "start_time": "2020-03-28T20:12:32.210903",
"status": "completed"
},
"tags": []
@@ -455,18 +455,18 @@
"version": "3.7.3"
},
"papermill": {
- "duration": 2.566078,
- "end_time": "2020-03-28T08:23:23.945976",
+ "duration": 6.835148,
+ "end_time": "2020-03-28T20:12:32.619791",
"environment_variables": {},
"exception": null,
- "input_path": "/tmp/lrv5vlu8/notebooks/process/download-covidtracking-data.ipynb",
+ "input_path": "/tmp/wjmbqwda/notebooks/process/download-covidtracking-data.ipynb",
"output_path": "runs/download-covidtracking-data.runs.ipynb",
"parameters": {
- "PAPERMILL_INPUT_PATH": "/tmp/lrv5vlu8/notebooks/process/download-covidtracking-data.ipynb",
+ "PAPERMILL_INPUT_PATH": "/tmp/wjmbqwda/notebooks/process/download-covidtracking-data.ipynb",
"PAPERMILL_OUTPUT_PATH": "runs/download-covidtracking-data.runs.ipynb",
"out_folder": "data/covidtracking"
},
- "start_time": "2020-03-28T08:23:21.379898",
+ "start_time": "2020-03-28T20:12:25.784643",
"version": "1.1.0"
}
},