From 64898ca9654a1e9cf3c415d412f5ea485d3ced12 Mon Sep 17 00:00:00 2001
From: "CR (covid cron)" <cramakri+covid-cron@ethz.ch>
Date: Wed, 1 Apr 2020 11:27:26 +0000
Subject: [PATCH] renku update --with-siblings

---
 .../d636517058ee4a1bad0723245a86fd08.cwl      | 248 ++++++++++
 .../ts_rates_19-covid-confirmed.csv           |   4 +-
 .../ts_rates_19-covid-deaths.csv              |   4 +-
 runs/Dashboard.run.ipynb                      | 301 +++++--------
 runs/ToRates.run.ipynb                        | 218 ++++-----
 runs/covidtracking-dashboard.ipynb            | 152 +++----
 runs/italy-covid-19.ipynb                     | 422 ++++++++++++++----
 runs/openzh-covid-19-dashboard.run.ipynb      | 321 ++++++++-----
 8 files changed, 1099 insertions(+), 571 deletions(-)
 create mode 100644 .renku/workflow/d636517058ee4a1bad0723245a86fd08.cwl

diff --git a/.renku/workflow/d636517058ee4a1bad0723245a86fd08.cwl b/.renku/workflow/d636517058ee4a1bad0723245a86fd08.cwl
new file mode 100644
index 0000000..dc0f7ab
--- /dev/null
+++ b/.renku/workflow/d636517058ee4a1bad0723245a86fd08.cwl
@@ -0,0 +1,248 @@
+class: Workflow
+cwlVersion: v1.0
+hints: []
+inputs:
+  input_1:
+    default:
+      class: File
+      path: ../../notebooks/covidtracking-dashboard.ipynb
+    streamable: false
+    type: File
+  input_10:
+    default:
+      class: File
+      path: ../../data/ch-population-statistics/ch-population-by-age-canton.xls
+    streamable: false
+    type: File
+  input_11:
+    default: ts_folder
+    streamable: false
+    type: string
+  input_12:
+    default:
+      class: Directory
+      listing: []
+      path: /tmp/covid-19-public-data/data/covid-19_jhu-csse
+    streamable: false
+    type: Directory
+  input_13:
+    default: rates_folder
+    streamable: false
+    type: string
+  input_14:
+    default: geodata_path
+    streamable: false
+    type: string
+  input_15:
+    default:
+      class: File
+      path: ../../data/geodata/geo_data.csv
+    streamable: false
+    type: File
+  input_16:
+    default:
+      class: File
+      path: ../../notebooks/Dashboard.ipynb
+    streamable: false
+    type: File
+  input_17:
+    default: runs/Dashboard.run.ipynb
+    streamable: false
+    type: string
+  input_18:
+    default:
+      class: File
+      path: ../../notebooks/examples/italy-covid-19.ipynb
+    streamable: false
+    type: File
+  input_19:
+    default: runs/italy-covid-19.ipynb
+    streamable: false
+    type: string
+  input_2:
+    default: runs/covidtracking-dashboard.ipynb
+    streamable: false
+    type: string
+  input_20:
+    default: data_folder
+    streamable: false
+    type: string
+  input_21:
+    default:
+      class: Directory
+      listing: []
+      path: /tmp/covid-19-public-data/data/covid-19-italy
+    streamable: false
+    type: Directory
+  input_22:
+    default: ts_folder
+    streamable: false
+    type: string
+  input_23:
+    default: runs/ToRates.run.ipynb
+    streamable: false
+    type: string
+  input_24:
+    default:
+      class: Directory
+      listing: []
+      path: /tmp/covid-19-public-data/data/covid-19_jhu-csse
+    streamable: false
+    type: Directory
+  input_25:
+    default: wb_path
+    streamable: false
+    type: string
+  input_26:
+    default:
+      class: File
+      path: ../../data/worldbank/SP.POP.TOTL.zip
+    streamable: false
+    type: File
+  input_27:
+    default: geodata_path
+    streamable: false
+    type: string
+  input_28:
+    default:
+      class: File
+      path: ../../data/geodata/geo_data.csv
+    streamable: false
+    type: File
+  input_29:
+    default: out_folder
+    streamable: false
+    type: string
+  input_3:
+    default: data_path
+    streamable: false
+    type: string
+  input_30:
+    default: data/covid-19_rates
+    streamable: false
+    type: string
+  input_31:
+    default:
+      class: File
+      path: ../../notebooks/process/ToRates.ipynb
+    streamable: false
+    type: File
+  input_4:
+    default:
+      class: Directory
+      listing: []
+      path: /tmp/covid-19-public-data/data/covidtracking
+    streamable: false
+    type: Directory
+  input_5:
+    default:
+      class: File
+      path: ../../data/geodata/us_pop_fung_2019.csv
+    streamable: false
+    type: File
+  input_6:
+    default:
+      class: File
+      path: ../../notebooks/openzh-covid-19-dashboard.ipynb
+    streamable: false
+    type: File
+  input_7:
+    default: runs/openzh-covid-19-dashboard.run.ipynb
+    streamable: false
+    type: string
+  input_8:
+    default: data_path
+    streamable: false
+    type: string
+  input_9:
+    default:
+      class: Directory
+      listing: []
+      path: /tmp/covid-19-public-data/data/openzh-covid-19
+    streamable: false
+    type: Directory
+outputs:
+  output_0:
+    outputSource: step_3/output_0
+    streamable: false
+    type: File
+  output_1:
+    outputSource: step_1/output_0
+    streamable: false
+    type: File
+  output_2:
+    outputSource: step_2/output_0
+    streamable: false
+    type: File
+  output_3:
+    outputSource: step_5/output_1
+    streamable: false
+    type: Directory
+  output_4:
+    outputSource: step_4/output_0
+    streamable: false
+    type: File
+  output_5:
+    outputSource: step_5/output_0
+    streamable: false
+    type: File
+requirements: []
+steps:
+  step_1:
+    in:
+      input_1: input_1
+      input_2: input_2
+      input_3: input_3
+      input_4: input_4
+      input_5: input_5
+    out:
+    - output_0
+    run: 30e7c6a1fdb74ccea2652434f5c83d13_papermill.cwl
+  step_2:
+    in:
+      input_1: input_6
+      input_2: input_7
+      input_3: input_8
+      input_4: input_9
+      input_5: input_10
+    out:
+    - output_0
+    run: 0415b23203ef422185f0ecf77290cbd3_papermill.cwl
+  step_3:
+    in:
+      input_2: input_11
+      input_3: input_12
+      input_4: input_13
+      input_5: step_5/output_1
+      input_6: input_14
+      input_7: input_15
+      input_8: input_16
+      input_9: input_17
+    out:
+    - output_0
+    run: e85c3f23b37044c580388dc2ce1fb946_papermill.cwl
+  step_4:
+    in:
+      input_1: input_18
+      input_2: input_19
+      input_3: input_20
+      input_4: input_21
+    out:
+    - output_0
+    run: f2c255fbcb87444ea80501341f0b7f1a_papermill.cwl
+  step_5:
+    in:
+      input_1: input_22
+      input_10: input_23
+      input_2: input_24
+      input_3: input_25
+      input_4: input_26
+      input_5: input_27
+      input_6: input_28
+      input_7: input_29
+      input_8: input_30
+      input_9: input_31
+    out:
+    - output_0
+    - output_1
+    run: 342d5ac23ef74852a0ecfa61ff854182_papermill.cwl
diff --git a/data/covid-19_rates/ts_rates_19-covid-confirmed.csv b/data/covid-19_rates/ts_rates_19-covid-confirmed.csv
index 3ac7341..3b34170 100644
--- a/data/covid-19_rates/ts_rates_19-covid-confirmed.csv
+++ b/data/covid-19_rates/ts_rates_19-covid-confirmed.csv
@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:1de456b0c9a54f99483348c7400ca13e359f35b4f59a9aed7e6d06e2ec5a6d59
-size 126665
+oid sha256:86cbea7430fc159a8c298c00b5335511e303463b7a1f0f1e81c62377c571d50b
+size 130483
diff --git a/data/covid-19_rates/ts_rates_19-covid-deaths.csv b/data/covid-19_rates/ts_rates_19-covid-deaths.csv
index de9f5fd..26dd489 100644
--- a/data/covid-19_rates/ts_rates_19-covid-deaths.csv
+++ b/data/covid-19_rates/ts_rates_19-covid-deaths.csv
@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:eeea0f41a0368e460450df12ed31732e22da2b5e824f50d68d34f147668935e6
-size 79066
+oid sha256:34878572f5667fcda2549e6b76230ed2f583e7e419ed2dada7a45f06cd5e41b4
+size 82285
diff --git a/runs/Dashboard.run.ipynb b/runs/Dashboard.run.ipynb
index a4389b2..40ea5ad 100644
--- a/runs/Dashboard.run.ipynb
+++ b/runs/Dashboard.run.ipynb
@@ -8,10 +8,10 @@
      "source_hidden": true
     },
     "papermill": {
-     "duration": 0.48317,
-     "end_time": "2020-03-31T08:27:03.045655",
+     "duration": 0.520385,
+     "end_time": "2020-04-01T11:27:21.674146",
      "exception": false,
-     "start_time": "2020-03-31T08:27:02.562485",
+     "start_time": "2020-04-01T11:27:21.153761",
      "status": "completed"
     },
     "tags": []
@@ -33,10 +33,10 @@
      "source_hidden": true
     },
     "papermill": {
-     "duration": 0.028376,
-     "end_time": "2020-03-31T08:27:03.096437",
+     "duration": 0.032189,
+     "end_time": "2020-04-01T11:27:21.730660",
      "exception": false,
-     "start_time": "2020-03-31T08:27:03.068061",
+     "start_time": "2020-04-01T11:27:21.698471",
      "status": "completed"
     },
     "tags": [
@@ -60,10 +60,10 @@
      "source_hidden": true
     },
     "papermill": {
-     "duration": 0.025939,
-     "end_time": "2020-03-31T08:27:03.135632",
+     "duration": 0.025723,
+     "end_time": "2020-04-01T11:27:21.777769",
      "exception": false,
-     "start_time": "2020-03-31T08:27:03.109693",
+     "start_time": "2020-04-01T11:27:21.752046",
      "status": "completed"
     },
     "tags": [
@@ -73,11 +73,11 @@
    "outputs": [],
    "source": [
     "# Parameters\n",
-    "PAPERMILL_INPUT_PATH = \"/tmp/2wos3ua9/notebooks/Dashboard.ipynb\"\n",
+    "PAPERMILL_INPUT_PATH = \"/tmp/ysk7y5s5/notebooks/Dashboard.ipynb\"\n",
     "PAPERMILL_OUTPUT_PATH = \"runs/Dashboard.run.ipynb\"\n",
-    "ts_folder = \"/tmp/2wos3ua9/data/covid-19_jhu-csse\"\n",
-    "rates_folder = \"/tmp/2wos3ua9/data/covid-19_rates\"\n",
-    "geodata_path = \"/tmp/2wos3ua9/data/geodata/geo_data.csv\"\n"
+    "ts_folder = \"/tmp/ysk7y5s5/data/covid-19_jhu-csse\"\n",
+    "rates_folder = \"/tmp/ysk7y5s5/data/covid-19_rates\"\n",
+    "geodata_path = \"/tmp/ysk7y5s5/data/geodata/geo_data.csv\"\n"
    ]
   },
   {
@@ -88,10 +88,10 @@
      "source_hidden": true
     },
     "papermill": {
-     "duration": 0.024675,
-     "end_time": "2020-03-31T08:27:03.173858",
+     "duration": 0.026624,
+     "end_time": "2020-04-01T11:27:21.817861",
      "exception": false,
-     "start_time": "2020-03-31T08:27:03.149183",
+     "start_time": "2020-04-01T11:27:21.791237",
      "status": "completed"
     },
     "tags": []
@@ -109,10 +109,10 @@
      "source_hidden": true
     },
     "papermill": {
-     "duration": 0.109598,
-     "end_time": "2020-03-31T08:27:03.298458",
+     "duration": 0.107881,
+     "end_time": "2020-04-01T11:27:21.942769",
      "exception": false,
-     "start_time": "2020-03-31T08:27:03.188860",
+     "start_time": "2020-04-01T11:27:21.834888",
      "status": "completed"
     },
     "tags": []
@@ -133,10 +133,10 @@
    "cell_type": "markdown",
    "metadata": {
     "papermill": {
-     "duration": 0.011724,
-     "end_time": "2020-03-31T08:27:03.331962",
+     "duration": 0.01101,
+     "end_time": "2020-04-01T11:27:21.974340",
      "exception": false,
-     "start_time": "2020-03-31T08:27:03.320238",
+     "start_time": "2020-04-01T11:27:21.963330",
      "status": "completed"
     },
     "tags": []
@@ -157,10 +157,10 @@
      "source_hidden": true
     },
     "papermill": {
-     "duration": 0.044903,
-     "end_time": "2020-03-31T08:27:03.387815",
+     "duration": 0.04425,
+     "end_time": "2020-04-01T11:27:22.028927",
      "exception": false,
-     "start_time": "2020-03-31T08:27:03.342912",
+     "start_time": "2020-04-01T11:27:21.984677",
      "status": "completed"
     },
     "tags": []
@@ -169,7 +169,7 @@
     {
      "data": {
       "text/html": [
-       "<em>Data up to Mar 30 2020; countries with 100 or more confirmed cases.</em>"
+       "<em>Data up to Mar 31 2020; countries with 100 or more confirmed cases.</em>"
       ],
       "text/plain": [
        "<IPython.core.display.HTML object>"
@@ -188,10 +188,10 @@
    "cell_type": "markdown",
    "metadata": {
     "papermill": {
-     "duration": 0.011017,
-     "end_time": "2020-03-31T08:27:03.419805",
+     "duration": 0.012328,
+     "end_time": "2020-04-01T11:27:22.059329",
      "exception": false,
-     "start_time": "2020-03-31T08:27:03.408788",
+     "start_time": "2020-04-01T11:27:22.047001",
      "status": "completed"
     },
     "tags": []
@@ -208,10 +208,10 @@
      "source_hidden": true
     },
     "papermill": {
-     "duration": 0.025114,
-     "end_time": "2020-03-31T08:27:03.456543",
+     "duration": 0.025748,
+     "end_time": "2020-04-01T11:27:22.096270",
      "exception": false,
-     "start_time": "2020-03-31T08:27:03.431429",
+     "start_time": "2020-04-01T11:27:22.070522",
      "status": "completed"
     },
     "tags": []
@@ -229,10 +229,10 @@
      "source_hidden": true
     },
     "papermill": {
-     "duration": 0.055161,
-     "end_time": "2020-03-31T08:27:03.526259",
+     "duration": 0.05609,
+     "end_time": "2020-04-01T11:27:22.168469",
      "exception": false,
-     "start_time": "2020-03-31T08:27:03.471098",
+     "start_time": "2020-04-01T11:27:22.112379",
      "status": "completed"
     },
     "tags": []
@@ -250,10 +250,10 @@
      "source_hidden": true
     },
     "papermill": {
-     "duration": 0.117363,
-     "end_time": "2020-03-31T08:27:03.667116",
+     "duration": 0.116613,
+     "end_time": "2020-04-01T11:27:22.309175",
      "exception": false,
-     "start_time": "2020-03-31T08:27:03.549753",
+     "start_time": "2020-04-01T11:27:22.192562",
      "status": "completed"
     },
     "tags": []
@@ -263,10 +263,10 @@
      "data": {
       "text/html": [
        "\n",
-       "<div id=\"altair-viz-b0a6d7c55ae746d185d43f010df4e0b3\"></div>\n",
+       "<div id=\"altair-viz-6c23389f6575448b9c09d16239c9977c\"></div>\n",
        "<script type=\"text/javascript\">\n",
        "  (function(spec, embedOpt){\n",
-       "    const outputDiv = document.getElementById(\"altair-viz-b0a6d7c55ae746d185d43f010df4e0b3\");\n",
+       "    const outputDiv = document.getElementById(\"altair-viz-6c23389f6575448b9c09d16239c9977c\");\n",
        "    const paths = {\n",
        "      \"vega\": \"https://cdn.jsdelivr.net/npm//vega@5?noext\",\n",
        "      \"vega-lib\": \"https://cdn.jsdelivr.net/npm//vega-lib?noext\",\n",
@@ -307,7 +307,7 @@
        "        .catch(showError)\n",
        "        .then(() => displayChart(vegaEmbed));\n",
        "    }\n",
-       "  })({\"config\": {\"view\": {\"continuousWidth\": 400, \"continuousHeight\": 300, \"stroke\": null}}, \"layer\": [{\"data\": {\"sphere\": true}, \"mark\": {\"type\": \"geoshape\", \"fill\": \"#cae6ef\"}}, {\"data\": {\"graticule\": true}, \"mark\": {\"type\": \"geoshape\", \"stroke\": \"white\", \"strokeWidth\": 0.5}}, {\"data\": {\"url\": \"https://vega.github.io/vega-datasets/data/world-110m.json\", \"format\": {\"feature\": \"countries\", \"type\": \"topojson\"}}, \"mark\": {\"type\": \"geoshape\", \"fill\": \"#dddddd\", \"stroke\": \"#aaaaaa\"}}, {\"data\": {\"name\": \"data-7d6de0f274ae7f8ce6847782d9e5e65c\"}, \"mark\": {\"type\": \"circle\", \"opacity\": 0.6}, \"encoding\": {\"color\": {\"value\": \"steelblue\"}, \"latitude\": {\"field\": \"Lat\", \"type\": \"quantitative\"}, \"longitude\": {\"field\": \"Long\", \"type\": \"quantitative\"}, \"size\": {\"type\": \"quantitative\", \"field\": \"Confirmed/100k\", \"title\": \"Cases\"}, \"tooltip\": [{\"type\": \"nominal\", \"field\": \"Country/Region\"}, {\"type\": \"quantitative\", \"field\": \"Confirmed\"}, {\"type\": \"quantitative\", \"field\": \"Deaths\"}, {\"type\": \"quantitative\", \"field\": \"Confirmed/100k\"}, {\"type\": \"quantitative\", \"field\": \"Deaths/100k\"}]}}], \"height\": 400, \"projection\": {\"type\": \"naturalEarth1\"}, \"title\": \"Confirmed cases per 100k inhabitants\", \"width\": 600, \"$schema\": \"https://vega.github.io/schema/vega-lite/v4.0.2.json\", \"datasets\": {\"data-7d6de0f274ae7f8ce6847782d9e5e65c\": [{\"Country/Region\": \"Afghanistan\", \"Confirmed/100k\": 0.45732872783576506, \"Deaths/100k\": 0.010760675949076823, \"Confirmed\": 170.0, \"Deaths\": 4.0, \"Long\": 66.00473366, \"Lat\": 33.83523073}, {\"Country/Region\": \"Albania\", \"Confirmed/100k\": 7.779858608919415, \"Deaths/100k\": 0.3837598416955765, \"Confirmed\": 223.0, \"Deaths\": 11.0, \"Long\": 20.04983396, \"Lat\": 41.14244989}, {\"Country/Region\": \"Algeria\", \"Confirmed/100k\": 1.3829545967717625, 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1.8767270471220996, \"Deaths/100k\": 0.010943014852023902, \"Confirmed\": 343.0, \"Deaths\": 2.0, \"Long\": 67.29149357, \"Lat\": 48.15688067}, {\"Country/Region\": \"Korea, South\", \"Confirmed/100k\": 18.95216710071119, \"Deaths/100k\": 0.31373912429135625, \"Confirmed\": 9786.0, \"Deaths\": 162.0, \"Long\": 127.83916086, \"Lat\": 36.38523983}, {\"Country/Region\": \"Kosovo\", \"Confirmed/100k\": 6.069473798298381, \"Deaths/100k\": 0.054191730341949816, \"Confirmed\": 112.0, \"Deaths\": 1.0, \"Long\": 20.87249811, \"Lat\": 42.57078707}, {\"Country/Region\": \"Kuwait\", \"Confirmed/100k\": 6.9852167193700065, \"Deaths/100k\": 0.0, \"Confirmed\": 289.0, \"Deaths\": 0.0, \"Long\": 47.58700459, \"Lat\": 29.33431262}, {\"Country/Region\": \"Kyrgyzstan\", \"Confirmed/100k\": 1.969900291747756, \"Deaths/100k\": 0.0, \"Confirmed\": 107.0, \"Deaths\": 0.0, \"Long\": 74.54165513, \"Lat\": 41.46221943}, {\"Country/Region\": \"Latvia\", \"Confirmed/100k\": 20.658776190708533, \"Deaths/100k\": 0.0, \"Confirmed\": 398.0, \"Deaths\": 0.0, \"Long\": 24.91235983, \"Lat\": 56.85085163}, {\"Country/Region\": \"Lebanon\", \"Confirmed/100k\": 6.86239081315681, \"Deaths/100k\": 0.17520997820825895, \"Confirmed\": 470.0, \"Deaths\": 12.0, \"Long\": 35.88016072, \"Lat\": 33.92306631}, {\"Country/Region\": \"Lithuania\", \"Confirmed/100k\": 19.25053404996464, \"Deaths/100k\": 0.28678635456185675, \"Confirmed\": 537.0, \"Deaths\": 8.0, \"Long\": 23.88719355, \"Lat\": 55.32610984}, {\"Country/Region\": \"Luxembourg\", \"Confirmed/100k\": 358.38401390095567, \"Deaths/100k\": 3.7845878419292847, \"Confirmed\": 2178.0, \"Deaths\": 23.0, \"Long\": 6.07182201, \"Lat\": 49.76725361}, {\"Country/Region\": \"Malaysia\", \"Confirmed/100k\": 8.772991239537074, \"Deaths/100k\": 0.1363841732827528, \"Confirmed\": 2766.0, \"Deaths\": 43.0, \"Long\": 109.69762284, \"Lat\": 3.78986846}, {\"Country/Region\": \"Malta\", \"Confirmed/100k\": 34.951295679688954, \"Deaths/100k\": 0.0, \"Confirmed\": 169.0, \"Deaths\": 0.0, \"Long\": 14.40523316, \"Lat\": 35.92149632}, {\"Country/Region\": \"Mauritius\", \"Confirmed/100k\": 11.301640792758729, \"Deaths/100k\": 0.3951622654810745, \"Confirmed\": 143.0, \"Deaths\": 5.0, \"Long\": 57.57120551, \"Lat\": -20.27768704}, {\"Country/Region\": \"Mexico\", \"Confirmed/100k\": 0.8669412540636485, \"Deaths/100k\": 0.02218862441844804, \"Confirmed\": 1094.0, \"Deaths\": 28.0, \"Long\": -102.52345169, \"Lat\": 23.94753724}, {\"Country/Region\": \"Moldova\", \"Confirmed/100k\": 9.95520720790844, \"Deaths/100k\": 0.11280688054287186, \"Confirmed\": 353.0, \"Deaths\": 4.0, \"Long\": 28.45673372, \"Lat\": 47.19498804}, {\"Country/Region\": \"Montenegro\", \"Confirmed/100k\": 17.514401176196486, \"Deaths/100k\": 0.3213651591962657, \"Confirmed\": 109.0, \"Deaths\": 2.0, \"Long\": 19.23883939, \"Lat\": 42.78890259}, {\"Country/Region\": \"Morocco\", \"Confirmed/100k\": 1.7125028081437863, \"Deaths/100k\": 0.09991912656916743, \"Confirmed\": 617.0, \"Deaths\": 36.0, \"Long\": -8.45615795, \"Lat\": 29.83762955}, {\"Country/Region\": \"Netherlands\", \"Confirmed/100k\": 73.51278221128794, \"Deaths/100k\": 6.035627496624256, \"Confirmed\": 12667.0, \"Deaths\": 1040.0, \"Long\": 5.28144793, \"Lat\": 52.1007899}, {\"Country/Region\": \"New Zealand\", \"Confirmed/100k\": 13.243270903694606, \"Deaths/100k\": 0.02046873400880156, \"Confirmed\": 647.0, \"Deaths\": 1.0, \"Long\": 171.48492347, \"Lat\": -41.81113557}, {\"Country/Region\": \"Nigeria\", \"Confirmed/100k\": 0.06892159754749387, \"Deaths/100k\": 0.0010210607044073166, \"Confirmed\": 135.0, \"Deaths\": 2.0, \"Long\": 8.08943895, \"Lat\": 9.59411452}, {\"Country/Region\": \"Norway\", \"Confirmed/100k\": 87.32981881461767, \"Deaths/100k\": 0.7338640236522493, \"Confirmed\": 4641.0, \"Deaths\": 39.0, \"Long\": 15.34834656, \"Lat\": 68.75015572}, {\"Country/Region\": \"Oman\", \"Confirmed/100k\": 3.9755808230404783, \"Deaths/100k\": 0.02070615012000249, \"Confirmed\": 192.0, \"Deaths\": 1.0, \"Long\": 56.09166155, \"Lat\": 20.60515333}, {\"Country/Region\": \"Pakistan\", \"Confirmed/100k\": 0.9132246665092476, \"Deaths/100k\": 0.01225172411209517, \"Confirmed\": 1938.0, \"Deaths\": 26.0, \"Long\": 69.33957937, \"Lat\": 29.9497515}, {\"Country/Region\": \"Panama\", \"Confirmed/100k\": 28.274740457753925, \"Deaths/100k\": 0.7182406551503959, \"Confirmed\": 1181.0, \"Deaths\": 30.0, \"Long\": -80.11915156, \"Lat\": 8.51750797}, {\"Country/Region\": \"Peru\", \"Confirmed/100k\": 3.3292427932678392, \"Deaths/100k\": 0.09378148713430534, \"Confirmed\": 1065.0, \"Deaths\": 30.0, \"Long\": -74.38242685, \"Lat\": -9.15280381}, {\"Country/Region\": \"Philippines\", \"Confirmed/100k\": 1.9540201066418659, \"Deaths/100k\": 0.08251140565474291, \"Confirmed\": 2084.0, \"Deaths\": 88.0, \"Long\": 122.88393253, \"Lat\": 11.77536778}, {\"Country/Region\": \"Poland\", \"Confirmed/100k\": 6.085014097958669, \"Deaths/100k\": 0.08689115760823715, \"Confirmed\": 2311.0, \"Deaths\": 33.0, \"Long\": 19.39012835, \"Lat\": 52.12759564}, {\"Country/Region\": \"Portugal\", \"Confirmed/100k\": 72.39031597891491, \"Deaths/100k\": 1.5561535075408284, \"Confirmed\": 7443.0, \"Deaths\": 160.0, \"Long\": -8.50104361, \"Lat\": 39.59550671}, {\"Country/Region\": \"Qatar\", \"Confirmed/100k\": 28.076588331427413, \"Deaths/100k\": 0.07189907383208043, \"Confirmed\": 781.0, \"Deaths\": 2.0, \"Long\": 51.18479632, \"Lat\": 25.30601188}, {\"Country/Region\": \"Romania\", \"Confirmed/100k\": 11.528229321488991, \"Deaths/100k\": 0.42107563668690295, \"Confirmed\": 2245.0, \"Deaths\": 82.0, \"Long\": 24.97293039, \"Lat\": 45.85243127}, {\"Country/Region\": \"Russia\", \"Confirmed/100k\": 1.6175467484507162, \"Deaths/100k\": 0.011766493249320572, \"Confirmed\": 2337.0, \"Deaths\": 17.0, \"Long\": 96.68656112, \"Lat\": 61.98052209}, {\"Country/Region\": \"Saudi Arabia\", \"Confirmed/100k\": 4.637989490013145, \"Deaths/100k\": 0.029673637172189026, \"Confirmed\": 1563.0, \"Deaths\": 10.0, \"Long\": 44.53686271, \"Lat\": 24.12245841}, {\"Country/Region\": \"Senegal\", \"Confirmed/100k\": 1.1037973150603366, \"Deaths/100k\": 0.0, \"Confirmed\": 175.0, \"Deaths\": 0.0, \"Long\": -14.4734924, \"Lat\": 14.36624173}, {\"Country/Region\": \"Serbia\", \"Confirmed/100k\": 12.890134234993448, \"Deaths/100k\": 0.2291579419554391, \"Confirmed\": 900.0, \"Deaths\": 16.0, \"Long\": 20.78958334, \"Lat\": 44.2215032}, {\"Country/Region\": \"Singapore\", \"Confirmed/100k\": 16.42229487915248, \"Deaths/100k\": 0.053203979090126835, \"Confirmed\": 926.0, \"Deaths\": 3.0, \"Long\": 103.81725592, \"Lat\": 1.35876087}, {\"Country/Region\": \"Slovakia\", \"Confirmed/100k\": 6.6642053779586625, \"Deaths/100k\": 0.0, \"Confirmed\": 363.0, \"Deaths\": 0.0, \"Long\": 19.47905218, \"Lat\": 48.70547528}, {\"Country/Region\": \"Slovenia\", \"Confirmed/100k\": 38.79321186511184, \"Deaths/100k\": 0.7255588254073287, \"Confirmed\": 802.0, \"Deaths\": 15.0, \"Long\": 14.80444238, 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8.20867471, \"Lat\": 46.79785878}, {\"Country/Region\": \"Taiwan*\", \"Confirmed/100k\": 1.4015632305022645, \"Deaths/100k\": 0.02176340420034572, \"Confirmed\": 322.0, \"Deaths\": 5.0, \"Long\": 120.95427281, \"Lat\": 23.7539928}, {\"Country/Region\": \"Thailand\", \"Confirmed/100k\": 2.3779851635618816, \"Deaths/100k\": 0.014403302020362697, \"Confirmed\": 1651.0, \"Deaths\": 10.0, \"Long\": 101.0028813, \"Lat\": 15.11815794}, {\"Country/Region\": \"Tunisia\", \"Confirmed/100k\": 3.4067708619752834, \"Deaths/100k\": 0.08646626553236761, \"Confirmed\": 394.0, \"Deaths\": 10.0, \"Long\": 9.55288359, \"Lat\": 34.11956246}, {\"Country/Region\": \"Turkey\", \"Confirmed/100k\": 16.437129939842848, \"Deaths/100k\": 0.25996199890077376, \"Confirmed\": 13531.0, \"Deaths\": 214.0, \"Long\": 35.16895346, \"Lat\": 39.0616029}, {\"Country/Region\": \"US\", \"Confirmed/100k\": 57.51550443128761, \"Deaths/100k\": 1.1837975291880671, \"Confirmed\": 188172.0, \"Deaths\": 3873.0, \"Long\": 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2.0, \"Long\": 63.14001528, \"Lat\": 41.75554225}, {\"Country/Region\": \"Venezuela\", \"Confirmed/100k\": 0.5034525094925971, \"Deaths/100k\": 0.011187833544279937, \"Confirmed\": 135.0, \"Deaths\": 3.0, \"Long\": -66.18184123, \"Lat\": 7.12422421}, {\"Country/Region\": \"Vietnam\", \"Confirmed/100k\": 0.22189567041249936, \"Deaths/100k\": 0.0, \"Confirmed\": 212.0, \"Deaths\": 0.0, \"Long\": 106.29914698, \"Lat\": 16.646016699999997}]}}, {\"mode\": \"vega-lite\"});\n",
        "</script>"
       ],
       "text/plain": [
@@ -469,10 +469,10 @@
    "cell_type": "markdown",
    "metadata": {
     "papermill": {
-     "duration": 0.01419,
-     "end_time": "2020-03-31T08:27:03.829513",
+     "duration": 0.014725,
+     "end_time": "2020-04-01T11:27:22.473699",
      "exception": false,
-     "start_time": "2020-03-31T08:27:03.815323",
+     "start_time": "2020-04-01T11:27:22.458974",
      "status": "completed"
     },
     "tags": []
@@ -489,17 +489,17 @@
      "source_hidden": true
     },
     "papermill": {
-     "duration": 0.074333,
-     "end_time": "2020-03-31T08:27:03.917246",
+     "duration": 0.063484,
+     "end_time": "2020-04-01T11:27:22.551643",
      "exception": false,
-     "start_time": "2020-03-31T08:27:03.842913",
+     "start_time": "2020-04-01T11:27:22.488159",
      "status": "completed"
     },
     "tags": []
    },
    "outputs": [],
    "source": [
-    "confirmed_rate_df = helper.growth_df(rates_frames_map, geodata_df, 'confirmed', countries_over_thresh, 2)\n",
+    "confirmed_rate_df = helper.growth_df(rates_frames_map, geodata_df, 'confirmed', countries_over_thresh, 10)\n",
     "latest_confirmed_ser = confirmed_rate_df.set_index(\n",
     "    ['Country/Region', 'Geo Region', 'Date']).drop(\n",
     "    ['Longitude', 'Latitude'], axis=1).unstack().iloc[:,-1]\n",
@@ -514,10 +514,10 @@
      "source_hidden": true
     },
     "papermill": {
-     "duration": 0.245699,
-     "end_time": "2020-03-31T08:27:04.191247",
+     "duration": 0.221361,
+     "end_time": "2020-04-01T11:27:22.800240",
      "exception": false,
-     "start_time": "2020-03-31T08:27:03.945548",
+     "start_time": "2020-04-01T11:27:22.578879",
      "status": "completed"
     },
     "tags": []
@@ -527,10 +527,10 @@
      "data": {
       "text/html": [
        "\n",
-       "<div id=\"altair-viz-466628e998f149d2aba52b7971bfbd82\"></div>\n",
+       "<div id=\"altair-viz-c6ab37367b7d4a6388df02872596e8ea\"></div>\n",
        "<script type=\"text/javascript\">\n",
        "  (function(spec, embedOpt){\n",
-       "    const outputDiv = document.getElementById(\"altair-viz-466628e998f149d2aba52b7971bfbd82\");\n",
+       "    const outputDiv = document.getElementById(\"altair-viz-c6ab37367b7d4a6388df02872596e8ea\");\n",
        "    const paths = {\n",
        "      \"vega\": \"https://cdn.jsdelivr.net/npm//vega@5?noext\",\n",
        "      \"vega-lib\": \"https://cdn.jsdelivr.net/npm//vega-lib?noext\",\n",
@@ -571,7 +571,7 @@
        "        .catch(showError)\n",
        "        .then(() => displayChart(vegaEmbed));\n",
        "    }\n",
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{\"Country/Region\": \"US\", \"Longitude\": -112.4616737, \"Latitude\": 45.6795472, \"Geo Region\": \"Americas\", \"Date\": \"2020-03-18T00:00:00\", \"Confirmed/100k\": 2.3789042524324104, \"Country\": \"US\"}, {\"Country/Region\": \"US\", \"Longitude\": -112.4616737, \"Latitude\": 45.6795472, \"Geo Region\": \"Americas\", \"Date\": \"2020-03-19T00:00:00\", \"Confirmed/100k\": 4.1804283002078995, \"Country\": \"US\"}, {\"Country/Region\": \"US\", \"Longitude\": -112.4616737, \"Latitude\": 45.6795472, \"Geo Region\": \"Americas\", \"Date\": \"2020-03-20T00:00:00\", \"Confirmed/100k\": 5.837989364185924, \"Country\": \"US\"}, {\"Country/Region\": \"US\", \"Longitude\": -112.4616737, \"Latitude\": 45.6795472, \"Geo Region\": \"Americas\", \"Date\": \"2020-03-21T00:00:00\", \"Confirmed/100k\": 7.790812089200786, \"Country\": \"US\"}, {\"Country/Region\": \"US\", \"Longitude\": -112.4616737, \"Latitude\": 45.6795472, \"Geo Region\": \"Americas\", \"Date\": \"2020-03-22T00:00:00\", 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Region\": \"Americas\", \"Date\": \"2020-03-27T00:00:00\", \"Confirmed/100k\": 31.071857842672692, \"Country\": \"US\"}, {\"Country/Region\": \"US\", \"Longitude\": -112.4616737, \"Latitude\": 45.6795472, \"Geo Region\": \"Americas\", \"Date\": \"2020-03-28T00:00:00\", \"Confirmed/100k\": 37.13022366400929, \"Country\": \"US\"}, {\"Country/Region\": \"US\", \"Longitude\": -112.4616737, \"Latitude\": 45.6795472, \"Geo Region\": \"Americas\", \"Date\": \"2020-03-29T00:00:00\", \"Confirmed/100k\": 43.06235442736639, \"Country\": \"US\"}, {\"Country/Region\": \"US\", \"Longitude\": -112.4616737, \"Latitude\": 45.6795472, \"Geo Region\": \"Americas\", \"Date\": \"2020-03-30T00:00:00\", \"Confirmed/100k\": 49.45693953145716, \"Country\": \"US\"}, {\"Country/Region\": \"US\", \"Longitude\": -112.4616737, \"Latitude\": 45.6795472, \"Geo Region\": \"Americas\", \"Date\": \"2020-03-31T00:00:00\", \"Confirmed/100k\": 57.51550443128761, \"Country\": \"US\"}, {\"Country/Region\": \"United Kingdom\", \"Longitude\": -2.86563164, \"Latitude\": 54.12387156, \"Geo Region\": \"Europe\", \"Date\": \"2020-01-22T00:00:00\", \"Confirmed/100k\": 0.0, \"Country\": \"United Kingdom\"}, {\"Country/Region\": \"United Kingdom\", \"Longitude\": -2.86563164, \"Latitude\": 54.12387156, \"Geo Region\": \"Europe\", \"Date\": \"2020-01-23T00:00:00\", \"Confirmed/100k\": 0.0, \"Country\": \"United Kingdom\"}, {\"Country/Region\": \"United Kingdom\", \"Longitude\": -2.86563164, \"Latitude\": 54.12387156, \"Geo Region\": \"Europe\", \"Date\": \"2020-01-24T00:00:00\", \"Confirmed/100k\": 0.0, \"Country\": \"United Kingdom\"}, {\"Country/Region\": \"United Kingdom\", \"Longitude\": -2.86563164, \"Latitude\": 54.12387156, \"Geo Region\": \"Europe\", \"Date\": \"2020-01-25T00:00:00\", \"Confirmed/100k\": 0.0, \"Country\": \"United Kingdom\"}, {\"Country/Region\": \"United Kingdom\", \"Longitude\": -2.86563164, \"Latitude\": 54.12387156, \"Geo Region\": \"Europe\", \"Date\": \"2020-01-26T00:00:00\", \"Confirmed/100k\": 0.0, \"Country\": \"United Kingdom\"}, {\"Country/Region\": \"United Kingdom\", \"Longitude\": -2.86563164, \"Latitude\": 54.12387156, \"Geo Region\": \"Europe\", \"Date\": \"2020-01-27T00:00:00\", \"Confirmed/100k\": 0.0, \"Country\": \"United Kingdom\"}, {\"Country/Region\": \"United Kingdom\", \"Longitude\": -2.86563164, \"Latitude\": 54.12387156, \"Geo Region\": \"Europe\", \"Date\": \"2020-01-28T00:00:00\", \"Confirmed/100k\": 0.0, \"Country\": \"United Kingdom\"}, {\"Country/Region\": \"United Kingdom\", \"Longitude\": -2.86563164, \"Latitude\": 54.12387156, \"Geo Region\": \"Europe\", \"Date\": \"2020-01-29T00:00:00\", \"Confirmed/100k\": 0.0, \"Country\": \"United Kingdom\"}, {\"Country/Region\": \"United Kingdom\", \"Longitude\": -2.86563164, \"Latitude\": 54.12387156, \"Geo Region\": \"Europe\", \"Date\": \"2020-01-30T00:00:00\", \"Confirmed/100k\": 0.0, \"Country\": \"United Kingdom\"}, {\"Country/Region\": \"United Kingdom\", \"Longitude\": -2.86563164, \"Latitude\": 54.12387156, \"Geo Region\": \"Europe\", \"Date\": \"2020-01-31T00:00:00\", \"Confirmed/100k\": 0.003008016770776383, \"Country\": \"United Kingdom\"}, {\"Country/Region\": \"United Kingdom\", \"Longitude\": -2.86563164, \"Latitude\": 54.12387156, \"Geo Region\": \"Europe\", \"Date\": \"2020-02-01T00:00:00\", \"Confirmed/100k\": 0.003008016770776383, \"Country\": \"United Kingdom\"}, {\"Country/Region\": \"United Kingdom\", \"Longitude\": -2.86563164, \"Latitude\": 54.12387156, \"Geo Region\": \"Europe\", \"Date\": \"2020-02-02T00:00:00\", \"Confirmed/100k\": 0.003008016770776383, \"Country\": \"United Kingdom\"}, {\"Country/Region\": \"United Kingdom\", \"Longitude\": -2.86563164, \"Latitude\": 54.12387156, \"Geo Region\": \"Europe\", \"Date\": \"2020-02-03T00:00:00\", \"Confirmed/100k\": 0.003008016770776383, \"Country\": \"United Kingdom\"}, {\"Country/Region\": \"United Kingdom\", \"Longitude\": -2.86563164, \"Latitude\": 54.12387156, \"Geo Region\": \"Europe\", \"Date\": \"2020-02-04T00:00:00\", \"Confirmed/100k\": 0.003008016770776383, \"Country\": \"United Kingdom\"}, {\"Country/Region\": \"United Kingdom\", \"Longitude\": -2.86563164, \"Latitude\": 54.12387156, \"Geo Region\": \"Europe\", \"Date\": \"2020-02-05T00:00:00\", \"Confirmed/100k\": 0.003008016770776383, \"Country\": \"United Kingdom\"}, {\"Country/Region\": \"United Kingdom\", \"Longitude\": -2.86563164, \"Latitude\": 54.12387156, \"Geo Region\": \"Europe\", \"Date\": \"2020-02-06T00:00:00\", \"Confirmed/100k\": 0.003008016770776383, \"Country\": \"United Kingdom\"}, {\"Country/Region\": \"United Kingdom\", \"Longitude\": -2.86563164, \"Latitude\": 54.12387156, \"Geo Region\": \"Europe\", \"Date\": \"2020-02-07T00:00:00\", \"Confirmed/100k\": 0.004512025156164575, \"Country\": \"United Kingdom\"}, {\"Country/Region\": \"United Kingdom\", \"Longitude\": -2.86563164, \"Latitude\": 54.12387156, \"Geo Region\": \"Europe\", \"Date\": \"2020-02-08T00:00:00\", \"Confirmed/100k\": 0.004512025156164575, \"Country\": \"United Kingdom\"}, {\"Country/Region\": \"United Kingdom\", \"Longitude\": -2.86563164, \"Latitude\": 54.12387156, \"Geo Region\": \"Europe\", \"Date\": \"2020-02-09T00:00:00\", \"Confirmed/100k\": 0.004512025156164575, \"Country\": \"United Kingdom\"}, {\"Country/Region\": \"United Kingdom\", \"Longitude\": -2.86563164, \"Latitude\": 54.12387156, \"Geo Region\": \"Europe\", \"Date\": \"2020-02-10T00:00:00\", \"Confirmed/100k\": 0.012032067083105532, \"Country\": \"United Kingdom\"}, {\"Country/Region\": \"United Kingdom\", \"Longitude\": -2.86563164, \"Latitude\": 54.12387156, \"Geo Region\": \"Europe\", \"Date\": \"2020-02-11T00:00:00\", \"Confirmed/100k\": 0.012032067083105532, \"Country\": \"United Kingdom\"}, {\"Country/Region\": \"United Kingdom\", \"Longitude\": -2.86563164, \"Latitude\": 54.12387156, \"Geo Region\": \"Europe\", \"Date\": \"2020-02-12T00:00:00\", \"Confirmed/100k\": 0.013536075468493723, \"Country\": \"United Kingdom\"}, {\"Country/Region\": \"United Kingdom\", \"Longitude\": -2.86563164, \"Latitude\": 54.12387156, \"Geo Region\": \"Europe\", \"Date\": \"2020-02-13T00:00:00\", \"Confirmed/100k\": 0.013536075468493723, \"Country\": \"United Kingdom\"}, {\"Country/Region\": \"United Kingdom\", \"Longitude\": -2.86563164, \"Latitude\": 54.12387156, \"Geo Region\": \"Europe\", \"Date\": \"2020-02-14T00:00:00\", \"Confirmed/100k\": 0.013536075468493723, \"Country\": \"United Kingdom\"}, {\"Country/Region\": \"United Kingdom\", \"Longitude\": -2.86563164, \"Latitude\": 54.12387156, \"Geo Region\": \"Europe\", \"Date\": \"2020-02-15T00:00:00\", \"Confirmed/100k\": 0.013536075468493723, \"Country\": \"United Kingdom\"}, {\"Country/Region\": \"United Kingdom\", \"Longitude\": -2.86563164, \"Latitude\": 54.12387156, \"Geo Region\": \"Europe\", \"Date\": \"2020-02-16T00:00:00\", \"Confirmed/100k\": 0.013536075468493723, \"Country\": \"United Kingdom\"}, {\"Country/Region\": \"United Kingdom\", \"Longitude\": -2.86563164, \"Latitude\": 54.12387156, \"Geo Region\": \"Europe\", \"Date\": \"2020-02-17T00:00:00\", \"Confirmed/100k\": 0.013536075468493723, \"Country\": \"United Kingdom\"}, {\"Country/Region\": \"United Kingdom\", \"Longitude\": -2.86563164, \"Latitude\": 54.12387156, \"Geo Region\": \"Europe\", \"Date\": \"2020-02-18T00:00:00\", \"Confirmed/100k\": 0.013536075468493723, \"Country\": \"United Kingdom\"}, {\"Country/Region\": \"United Kingdom\", \"Longitude\": -2.86563164, \"Latitude\": 54.12387156, \"Geo Region\": \"Europe\", \"Date\": \"2020-02-19T00:00:00\", \"Confirmed/100k\": 0.013536075468493723, \"Country\": \"United Kingdom\"}, {\"Country/Region\": \"United Kingdom\", \"Longitude\": -2.86563164, \"Latitude\": 54.12387156, \"Geo Region\": \"Europe\", \"Date\": \"2020-02-20T00:00:00\", \"Confirmed/100k\": 0.013536075468493723, \"Country\": \"United Kingdom\"}, {\"Country/Region\": \"United Kingdom\", \"Longitude\": -2.86563164, \"Latitude\": 54.12387156, \"Geo Region\": \"Europe\", \"Date\": \"2020-02-21T00:00:00\", \"Confirmed/100k\": 0.013536075468493723, \"Country\": \"United Kingdom\"}, {\"Country/Region\": \"United Kingdom\", \"Longitude\": -2.86563164, \"Latitude\": 54.12387156, \"Geo Region\": \"Europe\", \"Date\": \"2020-02-22T00:00:00\", \"Confirmed/100k\": 0.013536075468493723, \"Country\": \"United Kingdom\"}, {\"Country/Region\": \"United Kingdom\", \"Longitude\": -2.86563164, \"Latitude\": 54.12387156, \"Geo Region\": \"Europe\", \"Date\": \"2020-02-23T00:00:00\", \"Confirmed/100k\": 0.013536075468493723, \"Country\": \"United Kingdom\"}, {\"Country/Region\": \"United Kingdom\", \"Longitude\": -2.86563164, \"Latitude\": 54.12387156, \"Geo Region\": \"Europe\", \"Date\": \"2020-02-24T00:00:00\", \"Confirmed/100k\": 0.01955210901004649, \"Country\": \"United Kingdom\"}, {\"Country/Region\": \"United Kingdom\", \"Longitude\": -2.86563164, \"Latitude\": 54.12387156, \"Geo Region\": \"Europe\", \"Date\": \"2020-02-25T00:00:00\", \"Confirmed/100k\": 0.01955210901004649, \"Country\": \"United Kingdom\"}, {\"Country/Region\": \"United Kingdom\", \"Longitude\": -2.86563164, \"Latitude\": 54.12387156, \"Geo Region\": \"Europe\", \"Date\": \"2020-02-26T00:00:00\", \"Confirmed/100k\": 0.01955210901004649, \"Country\": \"United Kingdom\"}, {\"Country/Region\": \"United Kingdom\", \"Longitude\": -2.86563164, \"Latitude\": 54.12387156, \"Geo Region\": \"Europe\", \"Date\": \"2020-02-27T00:00:00\", \"Confirmed/100k\": 0.022560125780822875, \"Country\": \"United Kingdom\"}, {\"Country/Region\": \"United Kingdom\", \"Longitude\": -2.86563164, \"Latitude\": 54.12387156, \"Geo Region\": \"Europe\", \"Date\": \"2020-02-28T00:00:00\", \"Confirmed/100k\": 0.030080167707763825, \"Country\": \"United Kingdom\"}, {\"Country/Region\": \"United Kingdom\", \"Longitude\": -2.86563164, \"Latitude\": 54.12387156, \"Geo Region\": \"Europe\", \"Date\": \"2020-02-29T00:00:00\", \"Confirmed/100k\": 0.034592192863928416, \"Country\": \"United Kingdom\"}, {\"Country/Region\": \"United Kingdom\", \"Longitude\": -2.86563164, \"Latitude\": 54.12387156, \"Geo Region\": \"Europe\", \"Date\": \"2020-03-01T00:00:00\", \"Confirmed/100k\": 0.054144301873974884, \"Country\": \"United Kingdom\"}, {\"Country/Region\": \"United Kingdom\", \"Longitude\": -2.86563164, \"Latitude\": 54.12387156, \"Geo Region\": \"Europe\", \"Date\": \"2020-03-02T00:00:00\", \"Confirmed/100k\": 0.06016033541552765, \"Country\": \"United Kingdom\"}, {\"Country/Region\": \"United Kingdom\", \"Longitude\": -2.86563164, \"Latitude\": 54.12387156, \"Geo Region\": \"Europe\", \"Date\": \"2020-03-03T00:00:00\", \"Confirmed/100k\": 0.07670442765479778, \"Country\": \"United Kingdom\"}, {\"Country/Region\": \"United Kingdom\", \"Longitude\": -2.86563164, \"Latitude\": 54.12387156, \"Geo Region\": \"Europe\", \"Date\": \"2020-03-04T00:00:00\", \"Confirmed/100k\": 0.12934472114338447, \"Country\": \"United Kingdom\"}, {\"Country/Region\": \"United Kingdom\", \"Longitude\": -2.86563164, \"Latitude\": 54.12387156, \"Geo Region\": \"Europe\", \"Date\": \"2020-03-05T00:00:00\", \"Confirmed/100k\": 0.17446497270503022, \"Country\": \"United Kingdom\"}, {\"Country/Region\": \"United Kingdom\", \"Longitude\": -2.86563164, \"Latitude\": 54.12387156, \"Geo Region\": \"Europe\", \"Date\": \"2020-03-06T00:00:00\", \"Confirmed/100k\": 0.2466573752036634, \"Country\": \"United Kingdom\"}, {\"Country/Region\": \"United Kingdom\", \"Longitude\": -2.86563164, \"Latitude\": 54.12387156, \"Geo Region\": \"Europe\", \"Date\": \"2020-03-07T00:00:00\", \"Confirmed/100k\": 0.3113297357753557, \"Country\": \"United Kingdom\"}, {\"Country/Region\": \"United Kingdom\", \"Longitude\": -2.86563164, \"Latitude\": 54.12387156, \"Geo Region\": \"Europe\", \"Date\": \"2020-03-08T00:00:00\", \"Confirmed/100k\": 0.4120982975963645, \"Country\": \"United Kingdom\"}, {\"Country/Region\": \"United Kingdom\", \"Longitude\": -2.86563164, \"Latitude\": 54.12387156, \"Geo Region\": \"Europe\", \"Date\": \"2020-03-09T00:00:00\", \"Confirmed/100k\": 0.4842907000949977, \"Country\": \"United Kingdom\"}, {\"Country/Region\": \"United Kingdom\", \"Longitude\": -2.86563164, \"Latitude\": 54.12387156, \"Geo Region\": \"Europe\", \"Date\": \"2020-03-10T00:00:00\", \"Confirmed/100k\": 0.5775392199890655, \"Country\": \"United Kingdom\"}, {\"Country/Region\": \"United Kingdom\", \"Longitude\": -2.86563164, \"Latitude\": 54.12387156, \"Geo Region\": \"Europe\", \"Date\": \"2020-03-11T00:00:00\", \"Confirmed/100k\": 0.6903398488931799, \"Country\": \"United Kingdom\"}, {\"Country/Region\": \"United Kingdom\", \"Longitude\": -2.86563164, \"Latitude\": 54.12387156, \"Geo Region\": \"Europe\", \"Date\": \"2020-03-12T00:00:00\", \"Confirmed/100k\": 0.6903398488931799, \"Country\": \"United Kingdom\"}, {\"Country/Region\": \"United Kingdom\", \"Longitude\": -2.86563164, \"Latitude\": 54.12387156, \"Geo Region\": \"Europe\", \"Date\": \"2020-03-13T00:00:00\", \"Confirmed/100k\": 1.2062147250813295, \"Country\": \"United Kingdom\"}, {\"Country/Region\": \"United Kingdom\", \"Longitude\": -2.86563164, \"Latitude\": 54.12387156, \"Geo Region\": \"Europe\", \"Date\": \"2020-03-14T00:00:00\", \"Confirmed/100k\": 1.7205855928840912, \"Country\": \"United Kingdom\"}, {\"Country/Region\": \"United Kingdom\", \"Longitude\": -2.86563164, \"Latitude\": 54.12387156, \"Geo Region\": \"Europe\", \"Date\": \"2020-03-15T00:00:00\", \"Confirmed/100k\": 1.7220896012694793, \"Country\": \"United Kingdom\"}, {\"Country/Region\": \"United Kingdom\", \"Longitude\": -2.86563164, \"Latitude\": 54.12387156, \"Geo Region\": \"Europe\", \"Date\": \"2020-03-16T00:00:00\", \"Confirmed/100k\": 2.332717005737085, \"Country\": \"United Kingdom\"}, {\"Country/Region\": \"United Kingdom\", \"Longitude\": -2.86563164, \"Latitude\": 54.12387156, \"Geo Region\": \"Europe\", \"Date\": \"2020-03-17T00:00:00\", \"Confirmed/100k\": 2.947856435360856, \"Country\": \"United Kingdom\"}, {\"Country/Region\": \"United Kingdom\", \"Longitude\": -2.86563164, \"Latitude\": 54.12387156, \"Geo Region\": \"Europe\", \"Date\": \"2020-03-18T00:00:00\", \"Confirmed/100k\": 3.973590154195602, \"Country\": \"United Kingdom\"}, {\"Country/Region\": \"United Kingdom\", \"Longitude\": -2.86563164, \"Latitude\": 54.12387156, \"Geo Region\": \"Europe\", \"Date\": \"2020-03-19T00:00:00\", \"Confirmed/100k\": 4.084886774714328, \"Country\": \"United Kingdom\"}, {\"Country/Region\": \"United Kingdom\", \"Longitude\": -2.86563164, \"Latitude\": 54.12387156, \"Geo Region\": \"Europe\", \"Date\": \"2020-03-20T00:00:00\", \"Confirmed/100k\": 6.037089658948201, \"Country\": \"United Kingdom\"}, {\"Country/Region\": \"United Kingdom\", \"Longitude\": -2.86563164, \"Latitude\": 54.12387156, \"Geo Region\": \"Europe\", \"Date\": \"2020-03-21T00:00:00\", \"Confirmed/100k\": 7.6208104887619665, \"Country\": \"United Kingdom\"}, {\"Country/Region\": \"United Kingdom\", \"Longitude\": -2.86563164, \"Latitude\": 54.12387156, \"Geo Region\": \"Europe\", \"Date\": \"2020-03-22T00:00:00\", \"Confirmed/100k\": 8.640528174055161, \"Country\": \"United Kingdom\"}, {\"Country/Region\": \"United Kingdom\", \"Longitude\": -2.86563164, \"Latitude\": 54.12387156, \"Geo Region\": \"Europe\", \"Date\": \"2020-03-23T00:00:00\", \"Confirmed/100k\": 10.115960400120976, \"Country\": \"United Kingdom\"}, {\"Country/Region\": \"United Kingdom\", \"Longitude\": -2.86563164, \"Latitude\": 54.12387156, \"Geo Region\": \"Europe\", \"Date\": \"2020-03-24T00:00:00\", \"Confirmed/100k\": 12.278724458309195, \"Country\": \"United Kingdom\"}, {\"Country/Region\": \"United Kingdom\", \"Longitude\": -2.86563164, \"Latitude\": 54.12387156, \"Geo Region\": \"Europe\", \"Date\": \"2020-03-25T00:00:00\", \"Confirmed/100k\": 14.498640835142163, \"Country\": \"United Kingdom\"}, {\"Country/Region\": \"United Kingdom\", \"Longitude\": -2.86563164, \"Latitude\": 54.12387156, \"Geo Region\": \"Europe\", \"Date\": \"2020-03-26T00:00:00\", \"Confirmed/100k\": 17.76534704820532, \"Country\": \"United Kingdom\"}, {\"Country/Region\": \"United Kingdom\", \"Longitude\": -2.86563164, \"Latitude\": 54.12387156, \"Geo Region\": \"Europe\", \"Date\": \"2020-03-27T00:00:00\", \"Confirmed/100k\": 22.176603642548887, \"Country\": \"United Kingdom\"}, {\"Country/Region\": \"United Kingdom\", \"Longitude\": -2.86563164, \"Latitude\": 54.12387156, \"Geo Region\": \"Europe\", \"Date\": \"2020-03-28T00:00:00\", \"Confirmed/100k\": 26.03739316784037, \"Country\": \"United Kingdom\"}, {\"Country/Region\": \"United Kingdom\", \"Longitude\": -2.86563164, \"Latitude\": 54.12387156, \"Geo Region\": \"Europe\", \"Date\": \"2020-03-29T00:00:00\", \"Confirmed/100k\": 29.74928586297843, \"Country\": \"United Kingdom\"}, {\"Country/Region\": \"United Kingdom\", \"Longitude\": -2.86563164, \"Latitude\": 54.12387156, \"Geo Region\": \"Europe\", \"Date\": \"2020-03-30T00:00:00\", \"Confirmed/100k\": 33.769500277121075, \"Country\": \"United Kingdom\"}, {\"Country/Region\": \"United Kingdom\", \"Longitude\": -2.86563164, \"Latitude\": 54.12387156, \"Geo Region\": \"Europe\", \"Date\": \"2020-03-31T00:00:00\", \"Confirmed/100k\": 38.32363766807651, \"Country\": \"United Kingdom\"}]}}, {\"mode\": \"vega-lite\"});\n",
        "</script>"
       ],
       "text/plain": [
@@ -600,16 +600,20 @@
     }
    ],
    "source": [
-    "base = alt.Chart(confirmed_rate_df).properties(\n",
+    "confirmed_rate_df['Country'] = confirmed_rate_df['Country/Region']\n",
+    "base = alt.Chart(confirmed_rate_df.dropna()).properties(\n",
     "    width=300, height=200, title=\"Countries with 2 or more cases per 100k\")\n",
+    "confirmed_rate_df['Country'] = confirmed_rate_df['Country/Region']\n",
+    "selection = alt.selection_multi(fields=['Country'], bind='legend')\n",
+    "opacity=alt.condition(selection, alt.value(1), alt.value(0.2))\n",
     "line = base.mark_line().encode(\n",
-    "    x='Date',\n",
-    "    y='Confirmed/100k',\n",
-    "    color='Country/Region',\n",
+    "    alt.X('Date'),\n",
+    "    alt.Y('Confirmed/100k', scale=alt.Scale(type='symlog')),\n",
+    "    color=alt.Color('Country'),\n",
     "    facet=alt.Facet('Geo Region:N', columns=1, sort=alt.SortArray(sort_order), title='Geographic Region'),\n",
-    "    tooltip=[\"Country/Region:N\", \"Date:T\", \"Confirmed/100k:Q\"]\n",
-    ")\n",
-    "line\n",
+    "    tooltip=[\"Country:N\", \"Date:T\", \"Confirmed/100k:Q\"],\n",
+    "    opacity=opacity\n",
+    ").add_selection(selection)\n",
     "display(line)\n",
     "display(HTML('''\n",
     "<p style=\"font-size: smaller\">Data Sources: \n",
@@ -627,10 +631,10 @@
      "source_hidden": true
     },
     "papermill": {
-     "duration": 0.539442,
-     "end_time": "2020-03-31T08:27:04.764653",
+     "duration": 0.596297,
+     "end_time": "2020-04-01T11:27:23.426451",
      "exception": false,
-     "start_time": "2020-03-31T08:27:04.225211",
+     "start_time": "2020-04-01T11:27:22.830154",
      "status": "completed"
     },
     "tags": []
@@ -664,10 +668,10 @@
      "source_hidden": true
     },
     "papermill": {
-     "duration": 0.064241,
-     "end_time": "2020-03-31T08:27:04.876706",
+     "duration": 0.059115,
+     "end_time": "2020-04-01T11:27:23.529098",
      "exception": false,
-     "start_time": "2020-03-31T08:27:04.812465",
+     "start_time": "2020-04-01T11:27:23.469983",
      "status": "completed"
     },
     "tags": []
@@ -691,6 +695,7 @@
     "    ).transform_filter(f\"datum['Country/Region'] == '{ref_country}'\")\n",
     "    ref += ref.mark_text().encode(text='Country/Region:N').transform_filter(f\"datum['Days'] == {label_loc}\")\n",
     "    charts = []\n",
+    "    \n",
     "    # make our small multiples\n",
     "    for country in sort_order:\n",
     "        smallm = line.transform_filter(f\"datum['Country/Region'] == '{country}'\").properties(\n",
@@ -722,10 +727,10 @@
      "source_hidden": true
     },
     "papermill": {
-     "duration": 0.660038,
-     "end_time": "2020-03-31T08:27:05.582829",
+     "duration": 0.714406,
+     "end_time": "2020-04-01T11:27:24.285437",
      "exception": false,
-     "start_time": "2020-03-31T08:27:04.922791",
+     "start_time": "2020-04-01T11:27:23.571031",
      "status": "completed"
     },
     "tags": []
@@ -735,10 +740,10 @@
      "data": {
       "text/html": [
        "\n",
-       "<div id=\"altair-viz-fb796ff04a6a4396b2eef5d2ca064897\"></div>\n",
+       "<div id=\"altair-viz-771417387bc7427a9ceb22441cf4ae58\"></div>\n",
        "<script type=\"text/javascript\">\n",
        "  (function(spec, embedOpt){\n",
-       "    const outputDiv = document.getElementById(\"altair-viz-fb796ff04a6a4396b2eef5d2ca064897\");\n",
+       "    const outputDiv = document.getElementById(\"altair-viz-771417387bc7427a9ceb22441cf4ae58\");\n",
        "    const paths = {\n",
        "      \"vega\": \"https://cdn.jsdelivr.net/npm//vega@5?noext\",\n",
        "      \"vega-lib\": \"https://cdn.jsdelivr.net/npm//vega-lib?noext\",\n",
@@ -779,7 +784,7 @@
        "        .catch(showError)\n",
        "        .then(() => displayChart(vegaEmbed));\n",
        "    }\n",
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\"Confirmed/100k\": 171.454563716623}, {\"Country/Region\": \"Spain\", \"Days\": 28, \"Confirmed\": 87836, \"Confirmed/100k\": 188.24688061739224}, {\"Country/Region\": \"Spain\", \"Days\": 29, \"Confirmed\": 95803, \"Confirmed/100k\": 205.29816646348306}, {\"Country/Region\": \"Sweden\", \"Days\": 0, \"Confirmed\": 0, \"Confirmed/100k\": 0.9918321152292876}, {\"Country/Region\": \"Sweden\", \"Days\": 1, \"Confirmed\": 60, \"Confirmed/100k\": 1.581039312395201}, {\"Country/Region\": \"Sweden\", \"Days\": 2, \"Confirmed\": 102, \"Confirmed/100k\": 1.99348435041134}, {\"Country/Region\": \"Sweden\", \"Days\": 3, \"Confirmed\": 147, \"Confirmed/100k\": 2.435389748285776}, {\"Country/Region\": \"Sweden\", \"Days\": 4, \"Confirmed\": 254, \"Confirmed/100k\": 3.4861425832316537}, {\"Country/Region\": \"Sweden\", \"Days\": 5, \"Confirmed\": 399, \"Confirmed/100k\": 4.9100599763826125}, {\"Country/Region\": \"Sweden\", \"Days\": 6, \"Confirmed\": 498, \"Confirmed/100k\": 5.882251851706369}, {\"Country/Region\": \"Sweden\", \"Days\": 7, \"Confirmed\": 713, \"Confirmed/100k\": 7.993577641550892}, {\"Country/Region\": \"Sweden\", \"Days\": 8, \"Confirmed\": 860, \"Confirmed/100k\": 9.437135274607376}, {\"Country/Region\": \"Sweden\", \"Days\": 9, \"Confirmed\": 921, \"Confirmed/100k\": 10.036162591726056}, {\"Country/Region\": \"Sweden\", \"Days\": 10, \"Confirmed\": 1002, \"Confirmed/100k\": 10.831592307900042}, {\"Country/Region\": \"Sweden\", \"Days\": 11, \"Confirmed\": 1089, \"Confirmed/100k\": 11.685942743790614}, {\"Country/Region\": \"Sweden\", \"Days\": 12, \"Confirmed\": 1178, \"Confirmed/100k\": 12.559933419586716}, {\"Country/Region\": \"Sweden\", \"Days\": 13, \"Confirmed\": 1338, \"Confirmed/100k\": 14.131152612029155}, {\"Country/Region\": \"Sweden\", \"Days\": 14, \"Confirmed\": 1538, \"Confirmed/100k\": 16.0951766025822}, {\"Country/Region\": \"Sweden\", \"Days\": 15, \"Confirmed\": 1662, \"Confirmed/100k\": 17.31287147672509}, {\"Country/Region\": \"Sweden\", \"Days\": 16, \"Confirmed\": 1833, \"Confirmed/100k\": 18.99211198864794}, {\"Country/Region\": \"Sweden\", \"Days\": 17, \"Confirmed\": 1945, \"Confirmed/100k\": 20.09196542335765}, {\"Country/Region\": \"Sweden\", \"Days\": 18, \"Confirmed\": 2185, \"Confirmed/100k\": 22.448794212021298}, {\"Country/Region\": \"Sweden\", \"Days\": 19, \"Confirmed\": 2425, \"Confirmed/100k\": 24.805623000684953}, {\"Country/Region\": \"Sweden\", \"Days\": 20, \"Confirmed\": 2739, \"Confirmed/100k\": 27.889140665853233}, {\"Country/Region\": \"Sweden\", \"Days\": 21, \"Confirmed\": 2968, \"Confirmed/100k\": 30.137948135036467}, {\"Country/Region\": \"Sweden\", \"Days\": 22, \"Confirmed\": 3346, \"Confirmed/100k\": 33.84995347718172}, {\"Country/Region\": \"Sweden\", \"Days\": 23, \"Confirmed\": 3599, \"Confirmed/100k\": 36.334443825231325}, {\"Country/Region\": \"Sweden\", \"Days\": 24, \"Confirmed\": 3927, \"Confirmed/100k\": 39.55544316973832}, {\"Country/Region\": \"Sweden\", \"Days\": 25, \"Confirmed\": 4334, \"Confirmed/100k\": 43.552231990513754}, {\"Country/Region\": \"Switzerland\", \"Days\": 0, \"Confirmed\": 0, \"Confirmed/100k\": 1.3385712958884843}, {\"Country/Region\": \"Switzerland\", \"Days\": 1, \"Confirmed\": 100, \"Confirmed/100k\": 2.5127566431590846}, {\"Country/Region\": \"Switzerland\", \"Days\": 2, \"Confirmed\": 154, \"Confirmed/100k\": 3.1468167306852086}, {\"Country/Region\": \"Switzerland\", \"Days\": 3, \"Confirmed\": 223, \"Confirmed/100k\": 3.957004620301923}, {\"Country/Region\": \"Switzerland\", \"Days\": 4, \"Confirmed\": 260, \"Confirmed/100k\": 4.391453198792045}, {\"Country/Region\": \"Switzerland\", \"Days\": 5, \"Confirmed\": 377, \"Confirmed/100k\": 5.7652500550986465}, {\"Country/Region\": \"Switzerland\", \"Days\": 6, \"Confirmed\": 538, \"Confirmed/100k\": 7.655688464204314}, {\"Country/Region\": \"Switzerland\", \"Days\": 7, \"Confirmed\": 538, \"Confirmed/100k\": 7.655688464204314}, {\"Country/Region\": \"Switzerland\", \"Days\": 8, \"Confirmed\": 1025, \"Confirmed/100k\": 13.373971105412135}, {\"Country/Region\": \"Switzerland\", \"Days\": 9, \"Confirmed\": 1245, \"Confirmed/100k\": 15.957178869407455}, {\"Country/Region\": \"Switzerland\", \"Days\": 10, \"Confirmed\": 2086, \"Confirmed/100k\": 25.8320776399532}, {\"Country/Region\": \"Switzerland\", \"Days\": 11, \"Confirmed\": 2086, \"Confirmed/100k\": 25.8320776399532}, {\"Country/Region\": \"Switzerland\", \"Days\": 12, \"Confirmed\": 2586, \"Confirmed/100k\": 31.70300437630621}, {\"Country/Region\": \"Switzerland\", \"Days\": 13, \"Confirmed\": 2914, \"Confirmed/100k\": 35.554332315353776}, {\"Country/Region\": \"Switzerland\", \"Days\": 14, \"Confirmed\": 3961, \"Confirmed/100k\": 47.84805290127696}, {\"Country/Region\": \"Switzerland\", \"Days\": 15, \"Confirmed\": 5180, \"Confirmed/100k\": 62.161372284505575}, {\"Country/Region\": \"Switzerland\", \"Days\": 16, \"Confirmed\": 6461, \"Confirmed/100k\": 77.20268658304197}, {\"Country/Region\": \"Switzerland\", \"Days\": 17, \"Confirmed\": 7360, \"Confirmed/100k\": 87.75861285500467}, {\"Country/Region\": \"Switzerland\", \"Days\": 18, \"Confirmed\": 8681, \"Confirmed/100k\": 103.26960129244931}, {\"Country/Region\": \"Switzerland\", \"Days\": 19, \"Confirmed\": 9763, \"Confirmed/100k\": 115.9742867499172}, {\"Country/Region\": \"Switzerland\", \"Days\": 20, \"Confirmed\": 10783, \"Confirmed/100k\": 127.9509772920773}, {\"Country/Region\": \"Switzerland\", \"Days\": 21, \"Confirmed\": 11697, \"Confirmed/100k\": 138.6830313661306}, {\"Country/Region\": \"Switzerland\", \"Days\": 22, \"Confirmed\": 12814, \"Confirmed/100k\": 151.79868169514322}, {\"Country/Region\": \"Switzerland\", \"Days\": 23, \"Confirmed\": 13962, \"Confirmed/100k\": 165.2783294818097}, {\"Country/Region\": \"Switzerland\", \"Days\": 24, \"Confirmed\": 14715, \"Confirmed/100k\": 174.11994514675732}, {\"Country/Region\": \"Switzerland\", \"Days\": 25, \"Confirmed\": 15808, \"Confirmed/100k\": 186.95379099242496}, {\"Country/Region\": \"Switzerland\", \"Days\": 26, \"Confirmed\": 16491, \"Confirmed/100k\": 194.97347691428317}, {\"Country/Region\": \"Thailand\", \"Days\": 0, \"Confirmed\": 0, \"Confirmed/100k\": 0.16419764303213474}, {\"Country/Region\": \"Thailand\", \"Days\": 1, \"Confirmed\": 33, \"Confirmed/100k\": 0.21172853969933164}, {\"Country/Region\": \"Thailand\", \"Days\": 2, \"Confirmed\": 63, \"Confirmed/100k\": 0.2549384457604197}, {\"Country/Region\": \"Thailand\", \"Days\": 3, \"Confirmed\": 98, \"Confirmed/100k\": 0.3053500028316892}, {\"Country/Region\": \"Thailand\", \"Days\": 4, \"Confirmed\": 158, \"Confirmed/100k\": 0.3917698149538653}, {\"Country/Region\": \"Thailand\", \"Days\": 5, \"Confirmed\": 208, \"Confirmed/100k\": 0.4637863250556788}, {\"Country/Region\": \"Thailand\", \"Days\": 6, \"Confirmed\": 297, \"Confirmed/100k\": 0.5919757130369068}, {\"Country/Region\": \"Thailand\", \"Days\": 7, \"Confirmed\": 485, \"Confirmed/100k\": 0.8627577910197255}, {\"Country/Region\": \"Thailand\", \"Days\": 8, \"Confirmed\": 607, \"Confirmed/100k\": 1.0384780756681504}, {\"Country/Region\": \"Thailand\", \"Days\": 9, \"Confirmed\": 713, \"Confirmed/100k\": 1.191153077083995}, {\"Country/Region\": \"Thailand\", \"Days\": 10, \"Confirmed\": 820, \"Confirmed/100k\": 1.345268408701876}, {\"Country/Region\": \"Thailand\", \"Days\": 11, \"Confirmed\": 931, \"Confirmed/100k\": 1.5051450611279018}, {\"Country/Region\": \"Thailand\", \"Days\": 12, \"Confirmed\": 1022, \"Confirmed/100k\": 1.6362151095132025}, {\"Country/Region\": \"Thailand\", \"Days\": 13, \"Confirmed\": 1131, \"Confirmed/100k\": 1.7932111015351555}, {\"Country/Region\": \"Thailand\", \"Days\": 14, \"Confirmed\": 1274, \"Confirmed/100k\": 1.9991783204263425}, {\"Country/Region\": \"Thailand\", \"Days\": 15, \"Confirmed\": 1410, \"Confirmed/100k\": 2.1950632279032747}, {\"Country/Region\": \"Thailand\", \"Days\": 16, \"Confirmed\": 1537, \"Confirmed/100k\": 2.3779851635618816}, {\"Country/Region\": \"Turkey\", \"Days\": 0, \"Confirmed\": 0, \"Confirmed/100k\": 0.2332369335932176}, {\"Country/Region\": \"Turkey\", \"Days\": 1, \"Confirmed\": 167, \"Confirmed/100k\": 0.436104474791485}, {\"Country/Region\": \"Turkey\", \"Days\": 2, \"Confirmed\": 478, \"Confirmed/100k\": 0.8138997161846656}, {\"Country/Region\": \"Turkey\", \"Days\": 3, \"Confirmed\": 1044, \"Confirmed/100k\": 1.5014627600063382}, {\"Country/Region\": \"Turkey\", \"Days\": 4, \"Confirmed\": 1337, \"Confirmed/100k\": 1.8573920388751548}, {\"Country/Region\": \"Turkey\", \"Days\": 5, \"Confirmed\": 1680, \"Confirmed/100k\": 2.274060102533872}, {\"Country/Region\": \"Turkey\", \"Days\": 6, \"Confirmed\": 2241, \"Confirmed/100k\": 2.9555492678765543}, {\"Country/Region\": \"Turkey\", \"Days\": 7, \"Confirmed\": 3437, \"Confirmed/100k\": 4.408421000050971}, {\"Country/Region\": \"Turkey\", \"Days\": 8, \"Confirmed\": 5506, \"Confirmed/100k\": 6.92179191465705}, {\"Country/Region\": \"Turkey\", \"Days\": 9, \"Confirmed\": 7210, \"Confirmed/100k\": 8.991769700296857}, {\"Country/Region\": \"Turkey\", \"Days\": 10, \"Confirmed\": 9025, \"Confirmed/100k\": 11.196587588170242}, {\"Country/Region\": \"Turkey\", \"Days\": 11, \"Confirmed\": 10635, \"Confirmed/100k\": 13.152376458405035}, {\"Country/Region\": \"Turkey\", \"Days\": 12, \"Confirmed\": 13339, \"Confirmed/100k\": 16.437129939842848}, {\"Country/Region\": \"US\", \"Days\": 0, \"Confirmed\": 0, \"Confirmed/100k\": 0.03606715942271932}, {\"Country/Region\": \"US\", \"Days\": 1, \"Confirmed\": 31, \"Confirmed/100k\": 0.04554243011851846}, {\"Country/Region\": \"US\", \"Days\": 2, \"Confirmed\": 99, \"Confirmed/100k\": 0.06632689487059401}, {\"Country/Region\": \"US\", \"Days\": 3, \"Confirmed\": 144, \"Confirmed/100k\": 0.0800813200741734}, {\"Country/Region\": \"US\", \"Days\": 4, \"Confirmed\": 284, \"Confirmed/100k\": 0.122872865151976}, {\"Country/Region\": \"US\", \"Days\": 5, \"Confirmed\": 400, \"Confirmed/100k\": 0.15832871678786953}, {\"Country/Region\": \"US\", \"Days\": 6, \"Confirmed\": 465, \"Confirmed/100k\": 0.17819621985970646}, {\"Country/Region\": \"US\", \"Days\": 7, \"Confirmed\": 841, \"Confirmed/100k\": 0.2931220837829477}, {\"Country/Region\": \"US\", \"Days\": 8, \"Confirmed\": 1163, \"Confirmed/100k\": 0.3915426374618936}, {\"Country/Region\": \"US\", \"Days\": 9, \"Confirmed\": 1545, \"Confirmed/100k\": 0.508302424745612}, {\"Country/Region\": \"US\", \"Days\": 10, \"Confirmed\": 2061, \"Confirmed/100k\": 0.6660198337466559}, {\"Country/Region\": \"US\", \"Days\": 11, \"Confirmed\": 2609, \"Confirmed/100k\": 0.8335181673369116}, {\"Country/Region\": \"US\", \"Days\": 12, \"Confirmed\": 3381, \"Confirmed/100k\": 1.0694829730516515}, {\"Country/Region\": \"US\", \"Days\": 13, \"Confirmed\": 4514, \"Confirmed/100k\": 1.4157888342884395}, {\"Country/Region\": \"US\", \"Days\": 14, \"Confirmed\": 6303, \"Confirmed/100k\": 1.962603649604074}, {\"Country/Region\": \"US\", \"Days\": 15, \"Confirmed\": 7665, \"Confirmed/100k\": 2.3789042524324104}, {\"Country/Region\": \"US\", \"Days\": 16, \"Confirmed\": 13559, \"Confirmed/100k\": 4.1804283002078995}, {\"Country/Region\": \"US\", \"Days\": 17, \"Confirmed\": 18982, \"Confirmed/100k\": 5.837989364185924}, {\"Country/Region\": \"US\", \"Days\": 18, \"Confirmed\": 25371, \"Confirmed/100k\": 7.790812089200786}, {\"Country/Region\": \"US\", \"Days\": 19, \"Confirmed\": 33158, \"Confirmed/100k\": 10.170938957206848}, {\"Country/Region\": \"US\", \"Days\": 20, \"Confirmed\": 43729, \"Confirmed/100k\": 13.402006264474355}, {\"Country/Region\": \"US\", \"Days\": 21, \"Confirmed\": 53622, \"Confirmed/100k\": 16.425840232007932}, {\"Country/Region\": \"US\", \"Days\": 22, \"Confirmed\": 65660, \"Confirmed/100k\": 20.10530180091213}, {\"Country/Region\": \"US\", \"Days\": 23, \"Confirmed\": 83718, \"Confirmed/100k\": 25.62479980816184}, {\"Country/Region\": \"US\", \"Days\": 24, \"Confirmed\": 101539, \"Confirmed/100k\": 31.071857842672692}, {\"Country/Region\": \"US\", \"Days\": 25, \"Confirmed\": 121360, \"Confirmed/100k\": 37.13022366400929}, {\"Country/Region\": \"US\", \"Days\": 26, \"Confirmed\": 140768, \"Confirmed/100k\": 43.06235442736639}, {\"Country/Region\": \"US\", \"Days\": 27, \"Confirmed\": 161689, \"Confirmed/100k\": 49.45693953145716}, {\"Country/Region\": \"US\", \"Days\": 28, \"Confirmed\": 188054, \"Confirmed/100k\": 57.51550443128761}, {\"Country/Region\": \"United Kingdom\", \"Days\": 0, \"Confirmed\": 0, \"Confirmed/100k\": 0.17446497270503022}, {\"Country/Region\": \"United Kingdom\", \"Days\": 1, \"Confirmed\": 48, \"Confirmed/100k\": 0.2466573752036634}, {\"Country/Region\": \"United Kingdom\", \"Days\": 2, \"Confirmed\": 91, \"Confirmed/100k\": 0.3113297357753557}, {\"Country/Region\": \"United Kingdom\", \"Days\": 3, \"Confirmed\": 158, \"Confirmed/100k\": 0.4120982975963645}, {\"Country/Region\": \"United Kingdom\", \"Days\": 4, \"Confirmed\": 206, \"Confirmed/100k\": 0.4842907000949977}, {\"Country/Region\": \"United Kingdom\", \"Days\": 5, \"Confirmed\": 268, \"Confirmed/100k\": 0.5775392199890655}, {\"Country/Region\": \"United Kingdom\", \"Days\": 6, \"Confirmed\": 343, \"Confirmed/100k\": 0.6903398488931799}, {\"Country/Region\": \"United Kingdom\", \"Days\": 7, \"Confirmed\": 343, \"Confirmed/100k\": 0.6903398488931799}, {\"Country/Region\": \"United Kingdom\", \"Days\": 8, \"Confirmed\": 686, \"Confirmed/100k\": 1.2062147250813295}, {\"Country/Region\": \"United Kingdom\", \"Days\": 9, \"Confirmed\": 1028, \"Confirmed/100k\": 1.7205855928840912}, {\"Country/Region\": \"United Kingdom\", \"Days\": 10, \"Confirmed\": 1029, \"Confirmed/100k\": 1.7220896012694793}, {\"Country/Region\": \"United Kingdom\", \"Days\": 11, \"Confirmed\": 1435, \"Confirmed/100k\": 2.332717005737085}, {\"Country/Region\": \"United Kingdom\", \"Days\": 12, \"Confirmed\": 1844, \"Confirmed/100k\": 2.947856435360856}, {\"Country/Region\": \"United Kingdom\", \"Days\": 13, \"Confirmed\": 2526, \"Confirmed/100k\": 3.973590154195602}, {\"Country/Region\": \"United Kingdom\", \"Days\": 14, \"Confirmed\": 2600, \"Confirmed/100k\": 4.084886774714328}, {\"Country/Region\": \"United Kingdom\", \"Days\": 15, \"Confirmed\": 3898, \"Confirmed/100k\": 6.037089658948201}, {\"Country/Region\": \"United Kingdom\", \"Days\": 16, \"Confirmed\": 4951, \"Confirmed/100k\": 7.6208104887619665}, {\"Country/Region\": \"United Kingdom\", \"Days\": 17, \"Confirmed\": 5629, \"Confirmed/100k\": 8.640528174055161}, {\"Country/Region\": \"United Kingdom\", \"Days\": 18, \"Confirmed\": 6610, \"Confirmed/100k\": 10.115960400120976}, {\"Country/Region\": \"United Kingdom\", \"Days\": 19, \"Confirmed\": 8048, \"Confirmed/100k\": 12.278724458309195}, {\"Country/Region\": \"United Kingdom\", \"Days\": 20, \"Confirmed\": 9524, \"Confirmed/100k\": 14.498640835142163}, {\"Country/Region\": \"United Kingdom\", \"Days\": 21, \"Confirmed\": 11696, \"Confirmed/100k\": 17.76534704820532}, {\"Country/Region\": \"United Kingdom\", \"Days\": 22, \"Confirmed\": 14629, \"Confirmed/100k\": 22.176603642548887}, {\"Country/Region\": \"United Kingdom\", \"Days\": 23, \"Confirmed\": 17196, \"Confirmed/100k\": 26.03739316784037}, {\"Country/Region\": \"United Kingdom\", \"Days\": 24, \"Confirmed\": 19664, \"Confirmed/100k\": 29.74928586297843}, {\"Country/Region\": \"United Kingdom\", \"Days\": 25, \"Confirmed\": 22337, \"Confirmed/100k\": 33.769500277121075}, {\"Country/Region\": \"United Kingdom\", \"Days\": 26, \"Confirmed\": 25365, \"Confirmed/100k\": 38.32363766807651}]}}, {\"mode\": \"vega-lite\"});\n",
        "</script>"
       ],
       "text/plain": [
@@ -923,6 +928,7 @@
     }
    ],
    "source": [
+    "# Same with log scale\n",
     "sort_order = growth_in_value_df.groupby(\n",
     "    'Country/Region').max().sort_values(\n",
     "    'Confirmed', ascending=False).index.tolist()\n",
@@ -930,7 +936,8 @@
     "                             'Confirmed/100k',\n",
     "                             sort_order,\n",
     "                             'Italy',\n",
-    "                             \"Growth of cases/100k from case 100, compared to Italy\")\n",
+    "                             \"Growth of cases/100k from case 100, compared to Italy (log scale)\",\n",
+    "                             'log')\n",
     "display(chart)\n",
     "display(HTML('''\n",
     "<p style=\"font-size: smaller\">Data Sources: \n",
@@ -942,116 +949,22 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 17,
+   "execution_count": null,
    "metadata": {
     "jupyter": {
      "source_hidden": true
     },
     "papermill": {
-     "duration": 0.664239,
-     "end_time": "2020-03-31T08:27:07.072991",
+     "duration": 0.039521,
+     "end_time": "2020-04-01T11:27:25.205966",
      "exception": false,
-     "start_time": "2020-03-31T08:27:06.408752",
+     "start_time": "2020-04-01T11:27:25.166445",
      "status": "completed"
     },
     "tags": []
    },
-   "outputs": [
-    {
-     "data": {
-      "text/html": [
-       "\n",
-       "<div id=\"altair-viz-20913d991bea4e6bbc4c43751514d8fa\"></div>\n",
-       "<script type=\"text/javascript\">\n",
-       "  (function(spec, embedOpt){\n",
-       "    const outputDiv = document.getElementById(\"altair-viz-20913d991bea4e6bbc4c43751514d8fa\");\n",
-       "    const paths = {\n",
-       "      \"vega\": \"https://cdn.jsdelivr.net/npm//vega@5?noext\",\n",
-       "      \"vega-lib\": \"https://cdn.jsdelivr.net/npm//vega-lib?noext\",\n",
-       "      \"vega-lite\": \"https://cdn.jsdelivr.net/npm//vega-lite@4.0.2?noext\",\n",
-       "      \"vega-embed\": \"https://cdn.jsdelivr.net/npm//vega-embed@6?noext\",\n",
-       "    };\n",
-       "\n",
-       "    function loadScript(lib) {\n",
-       "      return new Promise(function(resolve, reject) {\n",
-       "        var s = document.createElement('script');\n",
-       "        s.src = paths[lib];\n",
-       "        s.async = true;\n",
-       "        s.onload = () => resolve(paths[lib]);\n",
-       "        s.onerror = () => reject(`Error loading script: ${paths[lib]}`);\n",
-       "        document.getElementsByTagName(\"head\")[0].appendChild(s);\n",
-       "      });\n",
-       "    }\n",
-       "\n",
-       "    function showError(err) {\n",
-       "      outputDiv.innerHTML = `<div class=\"error\" style=\"color:red;\">${err}</div>`;\n",
-       "      throw err;\n",
-       "    }\n",
-       "\n",
-       "    function displayChart(vegaEmbed) {\n",
-       "      vegaEmbed(outputDiv, spec, embedOpt)\n",
-       "        .catch(err => showError(`Javascript Error: ${err.message}<br>This usually means there's a typo in your chart specification. See the javascript console for the full traceback.`));\n",
-       "    }\n",
-       "\n",
-       "    if(typeof define === \"function\" && define.amd) {\n",
-       "      requirejs.config({paths});\n",
-       "      require([\"vega-embed\"], displayChart, err => showError(`Error loading script: ${err.message}`));\n",
-       "    } else if (typeof vegaEmbed === \"function\") {\n",
-       "      displayChart(vegaEmbed);\n",
-       "    } else {\n",
-       "      loadScript(\"vega\")\n",
-       "        .then(() => loadScript(\"vega-lite\"))\n",
-       "        .then(() => loadScript(\"vega-embed\"))\n",
-       "        .catch(showError)\n",
-       "        .then(() => displayChart(vegaEmbed));\n",
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\"Confirmed/100k\": 20.10530180091213}, {\"Country/Region\": \"US\", \"Days\": 23, \"Confirmed\": 83718, \"Confirmed/100k\": 25.62479980816184}, {\"Country/Region\": \"US\", \"Days\": 24, \"Confirmed\": 101539, \"Confirmed/100k\": 31.071857842672692}, {\"Country/Region\": \"US\", \"Days\": 25, \"Confirmed\": 121360, \"Confirmed/100k\": 37.13022366400929}, {\"Country/Region\": \"US\", \"Days\": 26, \"Confirmed\": 140768, \"Confirmed/100k\": 43.06235442736639}, {\"Country/Region\": \"US\", \"Days\": 27, \"Confirmed\": 161689, \"Confirmed/100k\": 49.45693953145716}, {\"Country/Region\": \"United Kingdom\", \"Days\": 0, \"Confirmed\": 0, \"Confirmed/100k\": 0.17446497270503022}, {\"Country/Region\": \"United Kingdom\", \"Days\": 1, \"Confirmed\": 48, \"Confirmed/100k\": 0.2466573752036634}, {\"Country/Region\": \"United Kingdom\", \"Days\": 2, \"Confirmed\": 91, \"Confirmed/100k\": 0.3113297357753557}, {\"Country/Region\": \"United Kingdom\", \"Days\": 3, \"Confirmed\": 158, \"Confirmed/100k\": 0.4120982975963645}, {\"Country/Region\": \"United Kingdom\", \"Days\": 4, \"Confirmed\": 206, \"Confirmed/100k\": 0.4842907000949977}, {\"Country/Region\": \"United Kingdom\", \"Days\": 5, \"Confirmed\": 268, \"Confirmed/100k\": 0.5775392199890655}, {\"Country/Region\": \"United Kingdom\", \"Days\": 6, \"Confirmed\": 343, \"Confirmed/100k\": 0.6903398488931799}, {\"Country/Region\": \"United Kingdom\", \"Days\": 7, \"Confirmed\": 343, \"Confirmed/100k\": 0.6903398488931799}, {\"Country/Region\": \"United Kingdom\", \"Days\": 8, \"Confirmed\": 686, \"Confirmed/100k\": 1.2062147250813295}, {\"Country/Region\": \"United Kingdom\", \"Days\": 9, \"Confirmed\": 1028, \"Confirmed/100k\": 1.7205855928840912}, {\"Country/Region\": \"United Kingdom\", \"Days\": 10, \"Confirmed\": 1029, \"Confirmed/100k\": 1.7220896012694793}, {\"Country/Region\": \"United Kingdom\", \"Days\": 11, \"Confirmed\": 1435, \"Confirmed/100k\": 2.332717005737085}, {\"Country/Region\": \"United Kingdom\", \"Days\": 12, \"Confirmed\": 1844, \"Confirmed/100k\": 2.947856435360856}, {\"Country/Region\": \"United Kingdom\", \"Days\": 13, \"Confirmed\": 2526, \"Confirmed/100k\": 3.973590154195602}, {\"Country/Region\": \"United Kingdom\", \"Days\": 14, \"Confirmed\": 2600, \"Confirmed/100k\": 4.084886774714328}, {\"Country/Region\": \"United Kingdom\", \"Days\": 15, \"Confirmed\": 3898, \"Confirmed/100k\": 6.037089658948201}, {\"Country/Region\": \"United Kingdom\", \"Days\": 16, \"Confirmed\": 4951, \"Confirmed/100k\": 7.6208104887619665}, {\"Country/Region\": \"United Kingdom\", \"Days\": 17, \"Confirmed\": 5629, \"Confirmed/100k\": 8.640528174055161}, {\"Country/Region\": \"United Kingdom\", \"Days\": 18, \"Confirmed\": 6610, \"Confirmed/100k\": 10.115960400120976}, {\"Country/Region\": \"United Kingdom\", \"Days\": 19, \"Confirmed\": 8048, \"Confirmed/100k\": 12.278724458309195}, {\"Country/Region\": \"United Kingdom\", \"Days\": 20, \"Confirmed\": 9524, \"Confirmed/100k\": 14.498640835142163}, {\"Country/Region\": \"United Kingdom\", \"Days\": 21, \"Confirmed\": 11696, \"Confirmed/100k\": 17.76534704820532}, {\"Country/Region\": \"United Kingdom\", \"Days\": 22, \"Confirmed\": 14629, \"Confirmed/100k\": 22.176603642548887}, {\"Country/Region\": \"United Kingdom\", \"Days\": 23, \"Confirmed\": 17196, \"Confirmed/100k\": 26.03739316784037}, {\"Country/Region\": \"United Kingdom\", \"Days\": 24, \"Confirmed\": 19664, \"Confirmed/100k\": 29.74928586297843}, {\"Country/Region\": \"United Kingdom\", \"Days\": 25, \"Confirmed\": 22337, \"Confirmed/100k\": 33.769500277121075}]}}, {\"mode\": \"vega-lite\"});\n",
-       "</script>"
-      ],
-      "text/plain": [
-       "alt.VConcatChart(...)"
-      ]
-     },
-     "metadata": {},
-     "output_type": "display_data"
-    },
-    {
-     "data": {
-      "text/html": [
-       "\n",
-       "<p style=\"font-size: smaller\">Data Sources: \n",
-       "  <a href=\"https://github.com/CSSEGISandData/COVID-19\">JHU CSSE</a>,\n",
-       "  <a href=\"https://data.worldbank.org/indicator/SP.POP.TOTL\">World Bank</a>,\n",
-       "  <a href=\"https://worldmap.harvard.edu/data/geonode:country_centroids_az8\">Harvard Worldmap</a>\n",
-       "</p>"
-      ],
-      "text/plain": [
-       "<IPython.core.display.HTML object>"
-      ]
-     },
-     "metadata": {},
-     "output_type": "display_data"
-    }
-   ],
-   "source": [
-    "# Same with log scale\n",
-    "sort_order = growth_in_value_df.groupby(\n",
-    "    'Country/Region').max().sort_values(\n",
-    "    'Confirmed', ascending=False).index.tolist()\n",
-    "chart = facetted_growth_plot(increase_df, \n",
-    "                             'Confirmed/100k',\n",
-    "                             sort_order,\n",
-    "                             'Italy',\n",
-    "                             \"Growth of cases/100k from case 100, compared to Italy (log scale)\",\n",
-    "                             'log')\n",
-    "display(chart)\n",
-    "display(HTML('''\n",
-    "<p style=\"font-size: smaller\">Data Sources: \n",
-    "  <a href=\"https://github.com/CSSEGISandData/COVID-19\">JHU CSSE</a>,\n",
-    "  <a href=\"https://data.worldbank.org/indicator/SP.POP.TOTL\">World Bank</a>,\n",
-    "  <a href=\"https://worldmap.harvard.edu/data/geonode:country_centroids_az8\">Harvard Worldmap</a>\n",
-    "</p>'''))"
-   ]
+   "outputs": [],
+   "source": []
   }
  ],
  "metadata": {
@@ -1074,20 +987,20 @@
    "version": "3.7.3"
   },
   "papermill": {
-   "duration": 5.697994,
-   "end_time": "2020-03-31T08:27:07.458784",
+   "duration": 5.337045,
+   "end_time": "2020-04-01T11:27:25.694570",
    "environment_variables": {},
    "exception": null,
-   "input_path": "/tmp/2wos3ua9/notebooks/Dashboard.ipynb",
+   "input_path": "/tmp/ysk7y5s5/notebooks/Dashboard.ipynb",
    "output_path": "runs/Dashboard.run.ipynb",
    "parameters": {
-    "PAPERMILL_INPUT_PATH": "/tmp/2wos3ua9/notebooks/Dashboard.ipynb",
+    "PAPERMILL_INPUT_PATH": "/tmp/ysk7y5s5/notebooks/Dashboard.ipynb",
     "PAPERMILL_OUTPUT_PATH": "runs/Dashboard.run.ipynb",
-    "geodata_path": "/tmp/2wos3ua9/data/geodata/geo_data.csv",
-    "rates_folder": "/tmp/2wos3ua9/data/covid-19_rates",
-    "ts_folder": "/tmp/2wos3ua9/data/covid-19_jhu-csse"
+    "geodata_path": "/tmp/ysk7y5s5/data/geodata/geo_data.csv",
+    "rates_folder": "/tmp/ysk7y5s5/data/covid-19_rates",
+    "ts_folder": "/tmp/ysk7y5s5/data/covid-19_jhu-csse"
    },
-   "start_time": "2020-03-31T08:27:01.760790",
+   "start_time": "2020-04-01T11:27:20.357525",
    "version": "1.1.0"
   }
  },
diff --git a/runs/ToRates.run.ipynb b/runs/ToRates.run.ipynb
index 7cd1506..166ea30 100644
--- a/runs/ToRates.run.ipynb
+++ b/runs/ToRates.run.ipynb
@@ -4,10 +4,10 @@
    "cell_type": "markdown",
    "metadata": {
     "papermill": {
-     "duration": 0.023722,
-     "end_time": "2020-03-31T08:26:29.208064",
+     "duration": 0.019478,
+     "end_time": "2020-04-01T11:27:01.649561",
      "exception": false,
-     "start_time": "2020-03-31T08:26:29.184342",
+     "start_time": "2020-04-01T11:27:01.630083",
      "status": "completed"
     },
     "tags": []
@@ -21,10 +21,10 @@
    "execution_count": 1,
    "metadata": {
     "papermill": {
-     "duration": 0.289996,
-     "end_time": "2020-03-31T08:26:29.510202",
+     "duration": 0.314841,
+     "end_time": "2020-04-01T11:27:01.975803",
      "exception": false,
-     "start_time": "2020-03-31T08:26:29.220206",
+     "start_time": "2020-04-01T11:27:01.660962",
      "status": "completed"
     },
     "tags": []
@@ -40,10 +40,10 @@
    "execution_count": 2,
    "metadata": {
     "papermill": {
-     "duration": 0.025824,
-     "end_time": "2020-03-31T08:26:29.556268",
+     "duration": 0.025124,
+     "end_time": "2020-04-01T11:27:02.020197",
      "exception": false,
-     "start_time": "2020-03-31T08:26:29.530444",
+     "start_time": "2020-04-01T11:27:01.995073",
      "status": "completed"
     },
     "tags": [
@@ -64,10 +64,10 @@
    "execution_count": 3,
    "metadata": {
     "papermill": {
-     "duration": 0.025839,
-     "end_time": "2020-03-31T08:26:29.596336",
+     "duration": 0.02624,
+     "end_time": "2020-04-01T11:27:02.059555",
      "exception": false,
-     "start_time": "2020-03-31T08:26:29.570497",
+     "start_time": "2020-04-01T11:27:02.033315",
      "status": "completed"
     },
     "tags": [
@@ -77,11 +77,11 @@
    "outputs": [],
    "source": [
     "# Parameters\n",
-    "PAPERMILL_INPUT_PATH = \"/tmp/8p13hxw8/notebooks/process/ToRates.ipynb\"\n",
+    "PAPERMILL_INPUT_PATH = \"/tmp/0xt6p8xn/notebooks/process/ToRates.ipynb\"\n",
     "PAPERMILL_OUTPUT_PATH = \"runs/ToRates.run.ipynb\"\n",
-    "ts_folder = \"/tmp/8p13hxw8/data/covid-19_jhu-csse\"\n",
-    "wb_path = \"/tmp/8p13hxw8/data/worldbank/SP.POP.TOTL.zip\"\n",
-    "geodata_path = \"/tmp/8p13hxw8/data/geodata/geo_data.csv\"\n",
+    "ts_folder = \"/tmp/0xt6p8xn/data/covid-19_jhu-csse\"\n",
+    "wb_path = \"/tmp/0xt6p8xn/data/worldbank/SP.POP.TOTL.zip\"\n",
+    "geodata_path = \"/tmp/0xt6p8xn/data/geodata/geo_data.csv\"\n",
     "out_folder = \"data/covid-19_rates\"\n"
    ]
   },
@@ -89,10 +89,10 @@
    "cell_type": "markdown",
    "metadata": {
     "papermill": {
-     "duration": 0.010967,
-     "end_time": "2020-03-31T08:26:29.623409",
+     "duration": 0.011617,
+     "end_time": "2020-04-01T11:27:02.085683",
      "exception": false,
-     "start_time": "2020-03-31T08:26:29.612442",
+     "start_time": "2020-04-01T11:27:02.074066",
      "status": "completed"
     },
     "tags": [
@@ -110,10 +110,10 @@
    "execution_count": 4,
    "metadata": {
     "papermill": {
-     "duration": 0.035116,
-     "end_time": "2020-03-31T08:26:29.670120",
+     "duration": 0.027955,
+     "end_time": "2020-04-01T11:27:02.124197",
      "exception": false,
-     "start_time": "2020-03-31T08:26:29.635004",
+     "start_time": "2020-04-01T11:27:02.096242",
      "status": "completed"
     },
     "tags": []
@@ -135,10 +135,10 @@
    "execution_count": 5,
    "metadata": {
     "papermill": {
-     "duration": 0.197789,
-     "end_time": "2020-03-31T08:26:29.888914",
+     "duration": 0.130804,
+     "end_time": "2020-04-01T11:27:02.266263",
      "exception": false,
-     "start_time": "2020-03-31T08:26:29.691125",
+     "start_time": "2020-04-01T11:27:02.135459",
      "status": "completed"
     },
     "tags": []
@@ -155,10 +155,10 @@
    "cell_type": "markdown",
    "metadata": {
     "papermill": {
-     "duration": 0.011664,
-     "end_time": "2020-03-31T08:26:29.923467",
+     "duration": 0.011109,
+     "end_time": "2020-04-01T11:27:02.297607",
      "exception": false,
-     "start_time": "2020-03-31T08:26:29.911803",
+     "start_time": "2020-04-01T11:27:02.286498",
      "status": "completed"
     },
     "tags": []
@@ -172,10 +172,10 @@
    "execution_count": 6,
    "metadata": {
     "papermill": {
-     "duration": 0.128319,
-     "end_time": "2020-03-31T08:26:30.062188",
+     "duration": 0.048434,
+     "end_time": "2020-04-01T11:27:02.356590",
      "exception": false,
-     "start_time": "2020-03-31T08:26:29.933869",
+     "start_time": "2020-04-01T11:27:02.308156",
      "status": "completed"
     },
     "tags": []
@@ -191,10 +191,10 @@
    "cell_type": "markdown",
    "metadata": {
     "papermill": {
-     "duration": 0.011435,
-     "end_time": "2020-03-31T08:26:30.094860",
+     "duration": 0.010856,
+     "end_time": "2020-04-01T11:27:02.386232",
      "exception": false,
-     "start_time": "2020-03-31T08:26:30.083425",
+     "start_time": "2020-04-01T11:27:02.375376",
      "status": "completed"
     },
     "tags": []
@@ -208,10 +208,10 @@
    "execution_count": 7,
    "metadata": {
     "papermill": {
-     "duration": 0.072682,
-     "end_time": "2020-03-31T08:26:30.177903",
+     "duration": 0.072055,
+     "end_time": "2020-04-01T11:27:02.468691",
      "exception": false,
-     "start_time": "2020-03-31T08:26:30.105221",
+     "start_time": "2020-04-01T11:27:02.396636",
      "status": "completed"
     },
     "tags": []
@@ -344,10 +344,10 @@
    "cell_type": "markdown",
    "metadata": {
     "papermill": {
-     "duration": 0.011737,
-     "end_time": "2020-03-31T08:26:30.209451",
+     "duration": 0.011756,
+     "end_time": "2020-04-01T11:27:02.501184",
      "exception": false,
-     "start_time": "2020-03-31T08:26:30.197714",
+     "start_time": "2020-04-01T11:27:02.489428",
      "status": "completed"
     },
     "tags": []
@@ -361,10 +361,10 @@
    "execution_count": 8,
    "metadata": {
     "papermill": {
-     "duration": 0.042153,
-     "end_time": "2020-03-31T08:26:30.262471",
+     "duration": 0.041359,
+     "end_time": "2020-04-01T11:27:02.553691",
      "exception": false,
-     "start_time": "2020-03-31T08:26:30.220318",
+     "start_time": "2020-04-01T11:27:02.512332",
      "status": "completed"
     },
     "tags": []
@@ -393,10 +393,10 @@
    "execution_count": 9,
    "metadata": {
     "papermill": {
-     "duration": 0.030927,
-     "end_time": "2020-03-31T08:26:30.317352",
+     "duration": 0.025978,
+     "end_time": "2020-04-01T11:27:02.602053",
      "exception": false,
-     "start_time": "2020-03-31T08:26:30.286425",
+     "start_time": "2020-04-01T11:27:02.576075",
      "status": "completed"
     },
     "tags": []
@@ -411,10 +411,10 @@
    "cell_type": "markdown",
    "metadata": {
     "papermill": {
-     "duration": 0.014022,
-     "end_time": "2020-03-31T08:26:30.350083",
+     "duration": 0.011822,
+     "end_time": "2020-04-01T11:27:02.632712",
      "exception": false,
-     "start_time": "2020-03-31T08:26:30.336061",
+     "start_time": "2020-04-01T11:27:02.620890",
      "status": "completed"
     },
     "tags": []
@@ -428,10 +428,10 @@
    "execution_count": 10,
    "metadata": {
     "papermill": {
-     "duration": 0.049026,
-     "end_time": "2020-03-31T08:26:30.409983",
+     "duration": 0.052959,
+     "end_time": "2020-04-01T11:27:02.696309",
      "exception": false,
-     "start_time": "2020-03-31T08:26:30.360957",
+     "start_time": "2020-04-01T11:27:02.643350",
      "status": "completed"
     },
     "tags": []
@@ -460,8 +460,8 @@
        "      <th></th>\n",
        "      <th></th>\n",
        "      <th></th>\n",
-       "      <th>2020-03-29 00:00:00</th>\n",
        "      <th>2020-03-30 00:00:00</th>\n",
+       "      <th>2020-03-31 00:00:00</th>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>Country/Region</th>\n",
@@ -476,15 +476,15 @@
        "      <th>Bahamas</th>\n",
        "      <th>-77.396300</th>\n",
        "      <th>25.034300</th>\n",
-       "      <td>11</td>\n",
+       "      <td>14</td>\n",
        "      <td>14</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>Burma</th>\n",
        "      <th>95.956000</th>\n",
        "      <th>21.916200</th>\n",
-       "      <td>10</td>\n",
        "      <td>14</td>\n",
+       "      <td>15</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>Congo (Brazzaville)</th>\n",
@@ -497,8 +497,8 @@
        "      <th>Congo (Kinshasa)</th>\n",
        "      <th>21.758700</th>\n",
        "      <th>-4.038300</th>\n",
-       "      <td>65</td>\n",
        "      <td>81</td>\n",
+       "      <td>98</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>Diamond Princess</th>\n",
@@ -525,15 +525,15 @@
        "      <th>Kyrgyzstan</th>\n",
        "      <th>74.766100</th>\n",
        "      <th>41.204400</th>\n",
-       "      <td>84</td>\n",
        "      <td>94</td>\n",
+       "      <td>107</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>Laos</th>\n",
        "      <th>102.495496</th>\n",
        "      <th>19.856270</th>\n",
        "      <td>8</td>\n",
-       "      <td>8</td>\n",
+       "      <td>9</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>MS Zaandam</th>\n",
@@ -546,15 +546,15 @@
        "      <th>Saint Kitts and Nevis</th>\n",
        "      <th>-62.782998</th>\n",
        "      <th>17.357822</th>\n",
-       "      <td>2</td>\n",
        "      <td>7</td>\n",
+       "      <td>8</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>Saint Lucia</th>\n",
        "      <th>-60.978900</th>\n",
        "      <th>13.909400</th>\n",
        "      <td>9</td>\n",
-       "      <td>9</td>\n",
+       "      <td>13</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>Saint Vincent and the Grenadines</th>\n",
@@ -567,21 +567,21 @@
        "      <th>Syria</th>\n",
        "      <th>38.996815</th>\n",
        "      <th>34.802075</th>\n",
-       "      <td>9</td>\n",
+       "      <td>10</td>\n",
        "      <td>10</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>Taiwan*</th>\n",
        "      <th>121.000000</th>\n",
        "      <th>23.700000</th>\n",
-       "      <td>298</td>\n",
        "      <td>306</td>\n",
+       "      <td>322</td>\n",
        "    </tr>\n",
        "    <tr>\n",
        "      <th>Venezuela</th>\n",
        "      <th>-66.589700</th>\n",
        "      <th>6.423800</th>\n",
-       "      <td>119</td>\n",
+       "      <td>135</td>\n",
        "      <td>135</td>\n",
        "    </tr>\n",
        "  </tbody>\n",
@@ -589,42 +589,42 @@
        "</div>"
       ],
       "text/plain": [
-       "                                                         2020-03-29 00:00:00  \\\n",
+       "                                                         2020-03-30 00:00:00  \\\n",
        "Country/Region                   Long        Lat                               \n",
-       "Bahamas                          -77.396300   25.034300                   11   \n",
-       "Burma                             95.956000   21.916200                   10   \n",
+       "Bahamas                          -77.396300   25.034300                   14   \n",
+       "Burma                             95.956000   21.916200                   14   \n",
        "Congo (Brazzaville)               21.758700  -4.038300                    19   \n",
-       "Congo (Kinshasa)                  21.758700  -4.038300                    65   \n",
+       "Congo (Kinshasa)                  21.758700  -4.038300                    81   \n",
        "Diamond Princess                  0.000000    0.000000                   712   \n",
        "Gambia                           -15.310100   13.443200                    4   \n",
        "Holy See                          12.453400   41.902900                    6   \n",
-       "Kyrgyzstan                        74.766100   41.204400                   84   \n",
+       "Kyrgyzstan                        74.766100   41.204400                   94   \n",
        "Laos                              102.495496  19.856270                    8   \n",
        "MS Zaandam                        0.000000    0.000000                     2   \n",
-       "Saint Kitts and Nevis            -62.782998   17.357822                    2   \n",
+       "Saint Kitts and Nevis            -62.782998   17.357822                    7   \n",
        "Saint Lucia                      -60.978900   13.909400                    9   \n",
        "Saint Vincent and the Grenadines -61.287200   12.984300                    1   \n",
-       "Syria                             38.996815   34.802075                    9   \n",
-       "Taiwan*                           121.000000  23.700000                  298   \n",
-       "Venezuela                        -66.589700   6.423800                   119   \n",
+       "Syria                             38.996815   34.802075                   10   \n",
+       "Taiwan*                           121.000000  23.700000                  306   \n",
+       "Venezuela                        -66.589700   6.423800                   135   \n",
        "\n",
-       "                                                         2020-03-30 00:00:00  \n",
+       "                                                         2020-03-31 00:00:00  \n",
        "Country/Region                   Long        Lat                              \n",
        "Bahamas                          -77.396300   25.034300                   14  \n",
-       "Burma                             95.956000   21.916200                   14  \n",
+       "Burma                             95.956000   21.916200                   15  \n",
        "Congo (Brazzaville)               21.758700  -4.038300                    19  \n",
-       "Congo (Kinshasa)                  21.758700  -4.038300                    81  \n",
+       "Congo (Kinshasa)                  21.758700  -4.038300                    98  \n",
        "Diamond Princess                  0.000000    0.000000                   712  \n",
        "Gambia                           -15.310100   13.443200                    4  \n",
        "Holy See                          12.453400   41.902900                    6  \n",
-       "Kyrgyzstan                        74.766100   41.204400                   94  \n",
-       "Laos                              102.495496  19.856270                    8  \n",
+       "Kyrgyzstan                        74.766100   41.204400                  107  \n",
+       "Laos                              102.495496  19.856270                    9  \n",
        "MS Zaandam                        0.000000    0.000000                     2  \n",
-       "Saint Kitts and Nevis            -62.782998   17.357822                    7  \n",
-       "Saint Lucia                      -60.978900   13.909400                    9  \n",
+       "Saint Kitts and Nevis            -62.782998   17.357822                    8  \n",
+       "Saint Lucia                      -60.978900   13.909400                   13  \n",
        "Saint Vincent and the Grenadines -61.287200   12.984300                    1  \n",
        "Syria                             38.996815   34.802075                   10  \n",
-       "Taiwan*                           121.000000  23.700000                  306  \n",
+       "Taiwan*                           121.000000  23.700000                  322  \n",
        "Venezuela                        -66.589700   6.423800                   135  "
       ]
      },
@@ -643,10 +643,10 @@
    "cell_type": "markdown",
    "metadata": {
     "papermill": {
-     "duration": 0.012806,
-     "end_time": "2020-03-31T08:26:30.442231",
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      "exception": false,
-     "start_time": "2020-03-31T08:26:30.429425",
+     "start_time": "2020-04-01T11:27:02.715000",
      "status": "completed"
     },
     "tags": []
@@ -660,10 +660,10 @@
    "execution_count": 11,
    "metadata": {
     "papermill": {
-     "duration": 0.040811,
-     "end_time": "2020-03-31T08:26:30.495324",
+     "duration": 0.053494,
+     "end_time": "2020-04-01T11:27:02.791050",
      "exception": false,
-     "start_time": "2020-03-31T08:26:30.454513",
+     "start_time": "2020-04-01T11:27:02.737556",
      "status": "completed"
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     "tags": []
@@ -677,10 +677,10 @@
    "cell_type": "markdown",
    "metadata": {
     "papermill": {
-     "duration": 0.019325,
-     "end_time": "2020-03-31T08:26:30.532777",
+     "duration": 0.012261,
+     "end_time": "2020-04-01T11:27:02.824290",
      "exception": false,
-     "start_time": "2020-03-31T08:26:30.513452",
+     "start_time": "2020-04-01T11:27:02.812029",
      "status": "completed"
     },
     "tags": []
@@ -694,10 +694,10 @@
    "execution_count": 12,
    "metadata": {
     "papermill": {
-     "duration": 0.06275,
-     "end_time": "2020-03-31T08:26:30.613420",
+     "duration": 0.057511,
+     "end_time": "2020-04-01T11:27:02.893568",
      "exception": false,
-     "start_time": "2020-03-31T08:26:30.550670",
+     "start_time": "2020-04-01T11:27:02.836057",
      "status": "completed"
     },
     "tags": []
@@ -944,10 +944,10 @@
    "cell_type": "markdown",
    "metadata": {
     "papermill": {
-     "duration": 0.012299,
-     "end_time": "2020-03-31T08:26:30.644592",
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+     "end_time": "2020-04-01T11:27:02.919573",
      "exception": false,
-     "start_time": "2020-03-31T08:26:30.632293",
+     "start_time": "2020-04-01T11:27:02.906102",
      "status": "completed"
     },
     "tags": []
@@ -961,10 +961,10 @@
    "execution_count": 13,
    "metadata": {
     "papermill": {
-     "duration": 0.053321,
-     "end_time": "2020-03-31T08:26:30.709753",
+     "duration": 0.051719,
+     "end_time": "2020-04-01T11:27:02.983318",
      "exception": false,
-     "start_time": "2020-03-31T08:26:30.656432",
+     "start_time": "2020-04-01T11:27:02.931599",
      "status": "completed"
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     "tags": []
@@ -989,10 +989,10 @@
    "execution_count": 14,
    "metadata": {
     "papermill": {
-     "duration": 0.074319,
-     "end_time": "2020-03-31T08:26:30.806792",
+     "duration": 0.089737,
+     "end_time": "2020-04-01T11:27:03.096681",
      "exception": false,
-     "start_time": "2020-03-31T08:26:30.732473",
+     "start_time": "2020-04-01T11:27:03.006944",
      "status": "completed"
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     "tags": []
@@ -1025,21 +1025,21 @@
    "version": "3.7.3"
   },
   "papermill": {
-   "duration": 2.842069,
-   "end_time": "2020-03-31T08:26:31.159365",
+   "duration": 2.686647,
+   "end_time": "2020-04-01T11:27:03.453324",
    "environment_variables": {},
    "exception": null,
-   "input_path": "/tmp/8p13hxw8/notebooks/process/ToRates.ipynb",
+   "input_path": "/tmp/0xt6p8xn/notebooks/process/ToRates.ipynb",
    "output_path": "runs/ToRates.run.ipynb",
    "parameters": {
-    "PAPERMILL_INPUT_PATH": "/tmp/8p13hxw8/notebooks/process/ToRates.ipynb",
+    "PAPERMILL_INPUT_PATH": "/tmp/0xt6p8xn/notebooks/process/ToRates.ipynb",
     "PAPERMILL_OUTPUT_PATH": "runs/ToRates.run.ipynb",
-    "geodata_path": "/tmp/8p13hxw8/data/geodata/geo_data.csv",
+    "geodata_path": "/tmp/0xt6p8xn/data/geodata/geo_data.csv",
     "out_folder": "data/covid-19_rates",
-    "ts_folder": "/tmp/8p13hxw8/data/covid-19_jhu-csse",
-    "wb_path": "/tmp/8p13hxw8/data/worldbank/SP.POP.TOTL.zip"
+    "ts_folder": "/tmp/0xt6p8xn/data/covid-19_jhu-csse",
+    "wb_path": "/tmp/0xt6p8xn/data/worldbank/SP.POP.TOTL.zip"
    },
-   "start_time": "2020-03-31T08:26:28.317296",
+   "start_time": "2020-04-01T11:27:00.766677",
    "version": "1.1.0"
   }
  },
diff --git a/runs/covidtracking-dashboard.ipynb b/runs/covidtracking-dashboard.ipynb
index bff97ac..0e58948 100644
--- a/runs/covidtracking-dashboard.ipynb
+++ b/runs/covidtracking-dashboard.ipynb
@@ -5,10 +5,10 @@
    "execution_count": 1,
    "metadata": {
     "papermill": {
-     "duration": 0.455355,
-     "end_time": "2020-03-31T08:26:24.844629",
+     "duration": 0.490347,
+     "end_time": "2020-04-01T11:27:05.700804",
      "exception": false,
-     "start_time": "2020-03-31T08:26:24.389274",
+     "start_time": "2020-04-01T11:27:05.210457",
      "status": "completed"
     },
     "tags": []
@@ -27,10 +27,10 @@
    "execution_count": 2,
    "metadata": {
     "papermill": {
-     "duration": 0.023984,
-     "end_time": "2020-03-31T08:26:24.888176",
+     "duration": 0.029985,
+     "end_time": "2020-04-01T11:27:05.750475",
      "exception": false,
-     "start_time": "2020-03-31T08:26:24.864192",
+     "start_time": "2020-04-01T11:27:05.720490",
      "status": "completed"
     },
     "tags": []
@@ -51,10 +51,10 @@
    "execution_count": 3,
    "metadata": {
     "papermill": {
-     "duration": 0.020841,
-     "end_time": "2020-03-31T08:26:24.920795",
+     "duration": 0.023353,
+     "end_time": "2020-04-01T11:27:05.794223",
      "exception": false,
-     "start_time": "2020-03-31T08:26:24.899954",
+     "start_time": "2020-04-01T11:27:05.770870",
      "status": "completed"
     },
     "tags": [
@@ -71,10 +71,10 @@
    "execution_count": 4,
    "metadata": {
     "papermill": {
-     "duration": 0.019956,
-     "end_time": "2020-03-31T08:26:24.951593",
+     "duration": 0.029298,
+     "end_time": "2020-04-01T11:27:05.842531",
      "exception": false,
-     "start_time": "2020-03-31T08:26:24.931637",
+     "start_time": "2020-04-01T11:27:05.813233",
      "status": "completed"
     },
     "tags": [
@@ -84,7 +84,7 @@
    "outputs": [],
    "source": [
     "# Parameters\n",
-    "data_path = \"/tmp/9belyqw7/data/covidtracking\"\n"
+    "data_path = \"/tmp/p1n92pwz/data/covidtracking\"\n"
    ]
   },
   {
@@ -92,10 +92,10 @@
    "execution_count": 5,
    "metadata": {
     "papermill": {
-     "duration": 0.148665,
-     "end_time": "2020-03-31T08:26:25.111085",
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      "exception": false,
-     "start_time": "2020-03-31T08:26:24.962420",
+     "start_time": "2020-04-01T11:27:05.861884",
      "status": "completed"
     },
     "tags": []
@@ -138,10 +138,10 @@
    "cell_type": "markdown",
    "metadata": {
     "papermill": {
-     "duration": 0.01033,
-     "end_time": "2020-03-31T08:26:25.139940",
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      "exception": false,
-     "start_time": "2020-03-31T08:26:25.129610",
+     "start_time": "2020-04-01T11:27:06.044224",
      "status": "completed"
     },
     "tags": []
@@ -156,10 +156,10 @@
    "cell_type": "markdown",
    "metadata": {
     "papermill": {
-     "duration": 0.009407,
-     "end_time": "2020-03-31T08:26:25.158400",
+     "duration": 0.010484,
+     "end_time": "2020-04-01T11:27:06.074744",
      "exception": false,
-     "start_time": "2020-03-31T08:26:25.148993",
+     "start_time": "2020-04-01T11:27:06.064260",
      "status": "completed"
     },
     "tags": []
@@ -173,10 +173,10 @@
    "execution_count": 6,
    "metadata": {
     "papermill": {
-     "duration": 0.053042,
-     "end_time": "2020-03-31T08:26:25.221786",
+     "duration": 0.057803,
+     "end_time": "2020-04-01T11:27:06.141859",
      "exception": false,
-     "start_time": "2020-03-31T08:26:25.168744",
+     "start_time": "2020-04-01T11:27:06.084056",
      "status": "completed"
     },
     "tags": []
@@ -207,10 +207,10 @@
    "execution_count": 7,
    "metadata": {
     "papermill": {
-     "duration": 0.358467,
-     "end_time": "2020-03-31T08:26:25.598040",
+     "duration": 0.378103,
+     "end_time": "2020-04-01T11:27:06.535435",
      "exception": false,
-     "start_time": "2020-03-31T08:26:25.239573",
+     "start_time": "2020-04-01T11:27:06.157332",
      "status": "completed"
     },
     "tags": []
@@ -220,10 +220,10 @@
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        "\n",
-       "<div id=\"altair-viz-8424468b24164b8b8f485465c0f30b88\"></div>\n",
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@@ -1007,10 +1007,10 @@
    "execution_count": null,
    "metadata": {
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@@ -1039,16 +1039,16 @@
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    "environment_variables": {},
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-   "input_path": "/tmp/9belyqw7/notebooks/covidtracking-dashboard.ipynb",
+   "input_path": "/tmp/p1n92pwz/notebooks/covidtracking-dashboard.ipynb",
    "output_path": "runs/covidtracking-dashboard.ipynb",
    "parameters": {
-    "data_path": "/tmp/9belyqw7/data/covidtracking"
+    "data_path": "/tmp/p1n92pwz/data/covidtracking"
    },
-   "start_time": "2020-03-31T08:26:23.593454",
+   "start_time": "2020-04-01T11:27:04.420579",
    "version": "1.1.0"
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diff --git a/runs/italy-covid-19.ipynb b/runs/italy-covid-19.ipynb
index 073621f..5729784 100644
--- a/runs/italy-covid-19.ipynb
+++ b/runs/italy-covid-19.ipynb
@@ -4,10 +4,10 @@
    "cell_type": "markdown",
    "metadata": {
     "papermill": {
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      "status": "completed"
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     "tags": []
@@ -23,10 +23,10 @@
    "execution_count": 1,
    "metadata": {
     "papermill": {
-     "duration": 0.042314,
-     "end_time": "2020-03-30T15:47:00.956999",
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      "exception": false,
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      "status": "completed"
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     "tags": []
@@ -42,10 +42,10 @@
    "execution_count": 2,
    "metadata": {
     "papermill": {
-     "duration": 0.574034,
-     "end_time": "2020-03-30T15:47:01.544605",
+     "duration": 0.508527,
+     "end_time": "2020-04-01T11:27:15.511134",
      "exception": false,
-     "start_time": "2020-03-30T15:47:00.970571",
+     "start_time": "2020-04-01T11:27:15.002607",
      "status": "completed"
     },
     "tags": []
@@ -59,6 +59,7 @@
     "\n",
     "from IPython.display import display, HTML\n",
     "\n",
+    "from covid_19_dashboard import helper, plotting\n",
     "from covid_19_dashboard.italy_utils import get_region_populations, prepare_dataframe"
    ]
   },
@@ -67,10 +68,10 @@
    "execution_count": 3,
    "metadata": {
     "papermill": {
-     "duration": 0.038937,
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      "status": "completed"
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     "tags": []
@@ -91,10 +92,10 @@
    "execution_count": 4,
    "metadata": {
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-     "end_time": "2020-03-30T15:47:01.645232",
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      "exception": false,
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+     "start_time": "2020-04-01T11:27:15.605706",
      "status": "completed"
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@@ -111,10 +112,10 @@
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    "metadata": {
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-     "start_time": "2020-03-30T15:47:01.659465",
+     "start_time": "2020-04-01T11:27:15.677290",
      "status": "completed"
     },
     "tags": [
@@ -124,7 +125,7 @@
    "outputs": [],
    "source": [
     "# Parameters\n",
-    "data_folder = \"./data/covid-19-italy/\"\n"
+    "data_folder = \"/tmp/1e7j_ih5/data/covid-19-italy\"\n"
    ]
   },
   {
@@ -132,10 +133,10 @@
    "execution_count": 6,
    "metadata": {
     "papermill": {
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-     "end_time": "2020-03-30T15:47:01.762893",
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      "exception": false,
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+     "start_time": "2020-04-01T11:27:15.753110",
      "status": "completed"
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@@ -155,10 +156,10 @@
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    "metadata": {
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-     "end_time": "2020-03-30T15:47:01.817068",
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      "exception": false,
-     "start_time": "2020-03-30T15:47:01.777682",
+     "start_time": "2020-04-01T11:27:15.838023",
      "status": "completed"
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@@ -174,10 +175,10 @@
    "cell_type": "markdown",
    "metadata": {
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-     "duration": 0.010648,
-     "end_time": "2020-03-30T15:47:01.842058",
+     "duration": 0.019045,
+     "end_time": "2020-04-01T11:27:15.929578",
      "exception": false,
-     "start_time": "2020-03-30T15:47:01.831410",
+     "start_time": "2020-04-01T11:27:15.910533",
      "status": "completed"
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@@ -191,10 +192,10 @@
    "execution_count": 8,
    "metadata": {
     "papermill": {
-     "duration": 0.094679,
-     "end_time": "2020-03-30T15:47:01.946901",
+     "duration": 0.102349,
+     "end_time": "2020-04-01T11:27:16.061429",
      "exception": false,
-     "start_time": "2020-03-30T15:47:01.852222",
+     "start_time": "2020-04-01T11:27:15.959080",
      "status": "completed"
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     "tags": []
@@ -204,10 +205,10 @@
      "data": {
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        "\n",
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        "<script type=\"text/javascript\">\n",
        "  (function(spec, embedOpt){\n",
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        "</script>"
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       "text/plain": [
@@ -485,8 +486,8 @@
     "base = alt.Chart(df_regions).encode(alt.X('date'))\n",
     "death = base.mark_line(color='black').encode(alt.Y('dead', title='Deaths'))\n",
     "total = base.mark_bar(color='orange', size=5).encode(alt.Y('total_cases', title=\"Total cases\")).properties(\n",
-    "    width=200,\n",
-    "    height=200)\n",
+    "    width=150,\n",
+    "    height=150)\n",
     "totals = alt.layer(total, death)\n",
     "chart = totals.facet(facet='region', \n",
     "             columns=5, \n",
@@ -504,10 +505,10 @@
    "execution_count": 13,
    "metadata": {
     "papermill": {
-     "duration": 0.155288,
-     "end_time": "2020-03-30T15:47:03.118439",
+     "duration": 0.189416,
+     "end_time": "2020-04-01T11:27:17.545235",
      "exception": false,
-     "start_time": "2020-03-30T15:47:02.963151",
+     "start_time": "2020-04-01T11:27:17.355819",
      "status": "completed"
     },
     "tags": []
@@ -517,10 +518,10 @@
      "data": {
       "text/html": [
        "\n",
-       "<div id=\"altair-viz-83b23d0ce38f495c8c89111b787f2cb1\"></div>\n",
+       "<div id=\"altair-viz-73f26521a4974350a20df709c6a762b2\"></div>\n",
        "<script type=\"text/javascript\">\n",
        "  (function(spec, embedOpt){\n",
-       "    const outputDiv = document.getElementById(\"altair-viz-83b23d0ce38f495c8c89111b787f2cb1\");\n",
+       "    const outputDiv = document.getElementById(\"altair-viz-73f26521a4974350a20df709c6a762b2\");\n",
        "    const paths = {\n",
        "      \"vega\": \"https://cdn.jsdelivr.net/npm//vega@5?noext\",\n",
        "      \"vega-lib\": \"https://cdn.jsdelivr.net/npm//vega-lib?noext\",\n",
@@ -561,7 +562,7 @@
        "        .catch(showError)\n",
        "        .then(() => displayChart(vegaEmbed));\n",
        "    }\n",
-       "  })({\"config\": {\"view\": {\"continuousWidth\": 400, \"continuousHeight\": 300}, \"title\": {\"anchor\": \"middle\"}}, \"data\": {\"name\": \"data-ad3f583db58caf31837f49afe6b50082\"}, \"facet\": {\"type\": \"nominal\", \"field\": \"region\"}, \"spec\": {\"layer\": [{\"mark\": {\"type\": \"bar\", \"color\": \"orange\", \"size\": 5}, \"encoding\": {\"x\": {\"type\": \"temporal\", \"field\": \"date\"}, \"y\": {\"type\": \"quantitative\", \"field\": \"total_cases_100k\", \"title\": \"Total cases\"}}, \"height\": 200, \"width\": 200}, {\"mark\": {\"type\": \"line\", \"color\": \"black\"}, \"encoding\": {\"x\": {\"type\": \"temporal\", \"field\": \"date\"}, \"y\": {\"type\": \"quantitative\", \"field\": \"dead_100k\", \"title\": \"Deaths\"}}}]}, \"align\": \"each\", \"columns\": 5, \"title\": \"Total cases (orange) and deaths (black) by region per 100k population\", \"$schema\": \"https://vega.github.io/schema/vega-lite/v4.0.2.json\", \"datasets\": 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        "</script>"
       ],
       "text/plain": [
@@ -596,8 +597,8 @@
     "base = alt.Chart(df_regions).encode(alt.X('date'))\n",
     "death = base.mark_line(color='black').encode(alt.Y('dead_100k', title='Deaths'))\n",
     "total = base.mark_bar(color='orange', size=5).encode(alt.Y('total_cases_100k', title=\"Total cases\")).properties(\n",
-    "    width=200,\n",
-    "    height=200)\n",
+    "    width=150,\n",
+    "    height=150)\n",
     "totals = alt.layer(total, death)\n",
     "chart = totals.facet(facet='region', \n",
     "             columns=5, \n",
@@ -615,10 +616,10 @@
    "execution_count": 14,
    "metadata": {
     "papermill": {
-     "duration": 0.112092,
-     "end_time": "2020-03-30T15:47:03.263790",
+     "duration": 0.109185,
+     "end_time": "2020-04-01T11:27:17.690241",
      "exception": false,
-     "start_time": "2020-03-30T15:47:03.151698",
+     "start_time": "2020-04-01T11:27:17.581056",
      "status": "completed"
     },
     "tags": []
@@ -636,10 +637,10 @@
    "execution_count": 15,
    "metadata": {
     "papermill": {
-     "duration": 0.169858,
-     "end_time": "2020-03-30T15:47:03.469457",
+     "duration": 0.183566,
+     "end_time": "2020-04-01T11:27:17.919766",
      "exception": false,
-     "start_time": "2020-03-30T15:47:03.299599",
+     "start_time": "2020-04-01T11:27:17.736200",
      "status": "completed"
     },
     "tags": []
@@ -649,10 +650,10 @@
      "data": {
       "text/html": [
        "\n",
-       "<div id=\"altair-viz-5e5f4ac644f74bf0a985b1aa082570bc\"></div>\n",
+       "<div id=\"altair-viz-2ce46cbd6d3e47679f15a9a2cc8a197f\"></div>\n",
        "<script type=\"text/javascript\">\n",
        "  (function(spec, embedOpt){\n",
-       "    const outputDiv = document.getElementById(\"altair-viz-5e5f4ac644f74bf0a985b1aa082570bc\");\n",
+       "    const outputDiv = document.getElementById(\"altair-viz-2ce46cbd6d3e47679f15a9a2cc8a197f\");\n",
        "    const paths = {\n",
        "      \"vega\": \"https://cdn.jsdelivr.net/npm//vega@5?noext\",\n",
        "      \"vega-lib\": \"https://cdn.jsdelivr.net/npm//vega-lib?noext\",\n",
@@ -693,7 +694,7 @@
        "        .catch(showError)\n",
        "        .then(() => displayChart(vegaEmbed));\n",
        "    }\n",
-       "  })({\"config\": {\"view\": {\"continuousWidth\": 400, \"continuousHeight\": 300}, \"title\": {\"anchor\": \"middle\"}}, \"data\": {\"name\": \"data-fa1eaeb9d63b2afbbe8a4ae16ad313bd\"}, \"facet\": {\"type\": \"nominal\", \"field\": \"region\"}, \"spec\": {\"layer\": [{\"mark\": {\"type\": \"bar\", \"color\": \"orange\"}, \"encoding\": {\"x\": {\"type\": \"temporal\", \"field\": \"date\"}, \"y\": {\"type\": \"quantitative\", \"field\": \"total_cases_diff\", \"title\": \"N\"}}, \"height\": 200, \"width\": 200}, {\"mark\": {\"type\": \"line\", \"color\": \"black\"}, \"encoding\": {\"x\": {\"type\": \"temporal\", \"field\": \"date\"}, \"y\": {\"type\": \"quantitative\", \"field\": \"dead_diff\"}}, \"height\": 200, \"width\": 200}]}, \"align\": \"each\", \"columns\": 5, \"title\": \"Daily new cases (orange) and deaths (black) by region\", \"$schema\": \"https://vega.github.io/schema/vega-lite/v4.0.2.json\", \"datasets\": {\"data-fa1eaeb9d63b2afbbe8a4ae16ad313bd\": [{\"region\": 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454, \"new_current_positive\": 74, \"new_positive\": 81, \"recovered\": 22, \"dead\": 12, \"total_cases\": 488, \"tests\": 13023, \"total_cases_100k\": 9.904973148997994, \"tests_100k\": 264.32882237582146, \"dead_100k\": 0.24356491349995066, \"total_cases_diff\": 81.0, \"dead_diff\": 2.0}, {\"region\": \"Veneto\", \"date\": \"2020-03-05T17:00:00\", \"country_code\": \"ITA\", \"region_code\": 5, \"latitude\": 45.43490485, \"longitude\": 12.33845213, \"hospitalised_with_symptoms\": 92, \"intensive_care\": 24, \"total_hospitalised\": 116, \"home_confinement\": 264, \"total_positive\": 380, \"new_current_positive\": 35, \"new_positive\": 47, \"recovered\": 17, \"dead\": 10, \"total_cases\": 407, \"tests\": 11949, \"total_cases_100k\": 8.260909982873327, \"tests_100k\": 242.52976261757587, \"dead_100k\": 0.2029707612499589, \"total_cases_diff\": 47.0, \"dead_diff\": 4.0}, {\"region\": \"Veneto\", \"date\": \"2020-03-04T17:00:00\", \"country_code\": \"ITA\", \"region_code\": 5, \"latitude\": 45.43490485, \"longitude\": 12.33845213, \"hospitalised_with_symptoms\": 76, \"intensive_care\": 23, \"total_hospitalised\": 99, \"home_confinement\": 246, \"total_positive\": 345, \"new_current_positive\": 48, \"new_positive\": 53, \"recovered\": 9, \"dead\": 6, \"total_cases\": 360, \"tests\": 10515, \"total_cases_100k\": 7.306947404998521, \"tests_100k\": 213.42375545433177, \"dead_100k\": 0.12178245674997533, \"total_cases_diff\": 53.0, \"dead_diff\": 3.0}, {\"region\": \"Veneto\", \"date\": \"2020-03-03T18:00:00\", \"country_code\": \"ITA\", \"region_code\": 5, \"latitude\": 45.43490485, \"longitude\": 12.33845213, \"hospitalised_with_symptoms\": 49, \"intensive_care\": 19, \"total_hospitalised\": 68, \"home_confinement\": 229, \"total_positive\": 297, \"new_current_positive\": 26, \"new_positive\": 34, \"recovered\": 7, \"dead\": 3, \"total_cases\": 307, \"tests\": 10176, \"total_cases_100k\": 6.2312023703737385, \"tests_100k\": 206.54304664795816, \"dead_100k\": 0.060891228374987665, \"total_cases_diff\": 34.0, \"dead_diff\": 1.0}, {\"region\": \"Veneto\", \"date\": \"2020-03-02T18:00:00\", \"country_code\": \"ITA\", \"region_code\": 5, \"latitude\": 45.43490485, \"longitude\": 12.33845213, \"hospitalised_with_symptoms\": 53, \"intensive_care\": 14, \"total_hospitalised\": 67, \"home_confinement\": 204, \"total_positive\": 271, \"new_current_positive\": 10, \"new_positive\": 10, \"recovered\": 0, \"dead\": 2, \"total_cases\": 273, \"tests\": 9782, \"total_cases_100k\": 5.541101782123878, \"tests_100k\": 198.54599865470982, \"dead_100k\": 0.04059415224999178, \"total_cases_diff\": 10.0, \"dead_diff\": 0.0}, {\"region\": \"Veneto\", \"date\": \"2020-03-01T17:00:00\", \"country_code\": \"ITA\", \"region_code\": 5, \"latitude\": 45.43490485, \"longitude\": 12.33845213, \"hospitalised_with_symptoms\": 51, \"intensive_care\": 13, \"total_hospitalised\": 64, \"home_confinement\": 197, \"total_positive\": 261, \"new_current_positive\": 72, \"new_positive\": 72, \"recovered\": 0, \"dead\": 2, \"total_cases\": 263, \"tests\": 9056, \"total_cases_100k\": 5.338131020873919, \"tests_100k\": 183.81032138796277, \"dead_100k\": 0.04059415224999178, \"total_cases_diff\": 72.0, \"dead_diff\": 0.0}, {\"region\": \"Veneto\", \"date\": \"2020-02-29T17:00:00\", \"country_code\": \"ITA\", \"region_code\": 5, \"latitude\": 45.43490485, \"longitude\": 12.33845213, \"hospitalised_with_symptoms\": 24, \"intensive_care\": 11, \"total_hospitalised\": 35, \"home_confinement\": 154, \"total_positive\": 189, \"new_current_positive\": 40, \"new_positive\": 40, \"recovered\": 0, \"dead\": 2, \"total_cases\": 191, \"tests\": 8659, \"total_cases_100k\": 3.8767415398742147, \"tests_100k\": 175.75238216633943, \"dead_100k\": 0.04059415224999178, \"total_cases_diff\": 40.0, \"dead_diff\": 0.0}, {\"region\": \"Veneto\", \"date\": \"2020-02-28T18:00:00\", \"country_code\": \"ITA\", \"region_code\": 5, \"latitude\": 45.43490485, \"longitude\": 12.33845213, \"hospitalised_with_symptoms\": 24, \"intensive_care\": 9, \"total_hospitalised\": 33, \"home_confinement\": 116, \"total_positive\": 149, \"new_current_positive\": 40, \"new_positive\": 40, \"recovered\": 0, \"dead\": 2, \"total_cases\": 151, \"tests\": 7414, \"total_cases_100k\": 3.06485849487438, \"tests_100k\": 150.48252239071954, \"dead_100k\": 0.04059415224999178, \"total_cases_diff\": 40.0, \"dead_diff\": 0.0}, {\"region\": \"Veneto\", \"date\": \"2020-02-27T18:00:00\", \"country_code\": \"ITA\", \"region_code\": 5, \"latitude\": 45.43490485, \"longitude\": 12.33845213, \"hospitalised_with_symptoms\": 19, \"intensive_care\": 8, \"total_hospitalised\": 27, \"home_confinement\": 82, \"total_positive\": 109, \"new_current_positive\": 40, \"new_positive\": 40, \"recovered\": 0, \"dead\": 2, \"total_cases\": 111, \"tests\": 6164, \"total_cases_100k\": 2.2529754498745436, \"tests_100k\": 125.11117723447467, \"dead_100k\": 0.04059415224999178, \"total_cases_diff\": 40.0, \"dead_diff\": 0.0}, {\"region\": \"Veneto\", \"date\": \"2020-02-26T18:00:00\", \"country_code\": \"ITA\", \"region_code\": 5, \"latitude\": 45.43490485, \"longitude\": 12.33845213, \"hospitalised_with_symptoms\": 16, \"intensive_care\": 8, \"total_hospitalised\": 24, \"home_confinement\": 45, \"total_positive\": 69, \"new_current_positive\": 27, \"new_positive\": 28, \"recovered\": 0, \"dead\": 2, \"total_cases\": 71, \"tests\": 4900, \"total_cases_100k\": 1.4410924048747082, \"tests_100k\": 99.45567301247986, \"dead_100k\": 0.04059415224999178, \"total_cases_diff\": 28.0, \"dead_diff\": 1.0}, {\"region\": \"Veneto\", \"date\": \"2020-02-25T18:00:00\", \"country_code\": \"ITA\", \"region_code\": 5, \"latitude\": 45.43490485, \"longitude\": 12.33845213, \"hospitalised_with_symptoms\": 12, \"intensive_care\": 7, \"total_hospitalised\": 19, \"home_confinement\": 23, \"total_positive\": 42, \"new_current_positive\": 10, \"new_positive\": 10, \"recovered\": 0, \"dead\": 1, \"total_cases\": 43, \"tests\": 3780, \"total_cases_100k\": 0.8727742733748233, \"tests_100k\": 76.72294775248447, \"dead_100k\": 0.02029707612499589, \"total_cases_diff\": 10.0, \"dead_diff\": 0.0}, {\"region\": \"Veneto\", \"date\": \"2020-02-24T18:00:00\", \"country_code\": \"ITA\", \"region_code\": 5, \"latitude\": 45.43490485, \"longitude\": 12.33845213, \"hospitalised_with_symptoms\": 12, \"intensive_care\": 4, \"total_hospitalised\": 16, \"home_confinement\": 16, \"total_positive\": 32, \"new_current_positive\": 0, \"new_positive\": 32, \"recovered\": 0, \"dead\": 1, \"total_cases\": 33, \"tests\": 2200, \"total_cases_100k\": 0.6698035121248644, \"tests_100k\": 44.65356747499096, \"dead_100k\": 0.02029707612499589, \"total_cases_diff\": null, \"dead_diff\": null}]}}, {\"mode\": \"vega-lite\"});\n",
        "</script>"
       ],
       "text/plain": [
@@ -725,8 +726,8 @@
    "source": [
     "# make the daily charts\n",
     "base = alt.Chart(tdf_diff).encode(alt.X('date')).properties(\n",
-    "    width=200,\n",
-    "    height=200,\n",
+    "    width=150,\n",
+    "    height=150,\n",
     ")\n",
     "daily_new = base.mark_bar(color='orange').encode(alt.Y('total_cases_diff', title='N'))\n",
     "daily_dead = base.mark_line(color='black').encode(alt.Y('dead_diff'))\n",
@@ -741,6 +742,271 @@
     "display(chart)\n",
     "display(html_credits)"
    ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {
+    "papermill": {
+     "duration": 0.046809,
+     "end_time": "2020-04-01T11:27:18.013328",
+     "exception": false,
+     "start_time": "2020-04-01T11:27:17.966519",
+     "status": "completed"
+    },
+    "tags": []
+   },
+   "outputs": [],
+   "source": []
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {
+    "papermill": {
+     "duration": 0.047243,
+     "end_time": "2020-04-01T11:27:18.107884",
+     "exception": false,
+     "start_time": "2020-04-01T11:27:18.060641",
+     "status": "completed"
+    },
+    "tags": []
+   },
+   "source": [
+    "## Rates of growth\n",
+    "\n",
+    "How quickly is the infection spreading? The charts below show data for all of the regions of Italy framed by some illustrative guiding lines to give an idea of how the rate of infection is evolving. "
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 16,
+   "metadata": {
+    "papermill": {
+     "duration": 0.308325,
+     "end_time": "2020-04-01T11:27:18.464742",
+     "exception": false,
+     "start_time": "2020-04-01T11:27:18.156417",
+     "status": "completed"
+    },
+    "tags": []
+   },
+   "outputs": [
+    {
+     "data": {
+      "text/html": [
+       "\n",
+       "<div id=\"altair-viz-745d5b37db1143caa16acfa929eed2d8\"></div>\n",
+       "<script type=\"text/javascript\">\n",
+       "  (function(spec, embedOpt){\n",
+       "    const outputDiv = document.getElementById(\"altair-viz-745d5b37db1143caa16acfa929eed2d8\");\n",
+       "    const paths = {\n",
+       "      \"vega\": \"https://cdn.jsdelivr.net/npm//vega@5?noext\",\n",
+       "      \"vega-lib\": \"https://cdn.jsdelivr.net/npm//vega-lib?noext\",\n",
+       "      \"vega-lite\": \"https://cdn.jsdelivr.net/npm//vega-lite@4.0.2?noext\",\n",
+       "      \"vega-embed\": \"https://cdn.jsdelivr.net/npm//vega-embed@6?noext\",\n",
+       "    };\n",
+       "\n",
+       "    function loadScript(lib) {\n",
+       "      return new Promise(function(resolve, reject) {\n",
+       "        var s = document.createElement('script');\n",
+       "        s.src = paths[lib];\n",
+       "        s.async = true;\n",
+       "        s.onload = () => resolve(paths[lib]);\n",
+       "        s.onerror = () => reject(`Error loading script: ${paths[lib]}`);\n",
+       "        document.getElementsByTagName(\"head\")[0].appendChild(s);\n",
+       "      });\n",
+       "    }\n",
+       "\n",
+       "    function showError(err) {\n",
+       "      outputDiv.innerHTML = `<div class=\"error\" style=\"color:red;\">${err}</div>`;\n",
+       "      throw err;\n",
+       "    }\n",
+       "\n",
+       "    function displayChart(vegaEmbed) {\n",
+       "      vegaEmbed(outputDiv, spec, embedOpt)\n",
+       "        .catch(err => showError(`Javascript Error: ${err.message}<br>This usually means there's a typo in your chart specification. See the javascript console for the full traceback.`));\n",
+       "    }\n",
+       "\n",
+       "    if(typeof define === \"function\" && define.amd) {\n",
+       "      requirejs.config({paths});\n",
+       "      require([\"vega-embed\"], displayChart, err => showError(`Error loading script: ${err.message}`));\n",
+       "    } else if (typeof vegaEmbed === \"function\") {\n",
+       "      displayChart(vegaEmbed);\n",
+       "    } else {\n",
+       "      loadScript(\"vega\")\n",
+       "        .then(() => loadScript(\"vega-lite\"))\n",
+       "        .then(() => loadScript(\"vega-embed\"))\n",
+       "        .catch(showError)\n",
+       "        .then(() => displayChart(vegaEmbed));\n",
+       "    }\n",
+       "  })({\"config\": {\"view\": {\"continuousWidth\": 400, \"continuousHeight\": 300}}, \"layer\": [{\"data\": {\"name\": \"data-2f94cb95d9712fbd3186532ecae967d0\"}, \"mark\": \"line\", \"encoding\": {\"color\": {\"type\": \"nominal\", \"field\": \"region\", \"legend\": {\"title\": \"Region\"}}, \"opacity\": {\"condition\": {\"value\": 1, \"selection\": \"selector001\"}, \"value\": 0.2}, \"tooltip\": [{\"type\": \"nominal\", \"field\": \"region\", \"title\": \"Region\"}, {\"type\": \"quantitative\", \"field\": \"total_cases\", \"title\": \"Cases\"}, {\"type\": \"temporal\", \"field\": \"date\", \"title\": \"Date\"}], \"x\": {\"type\": \"quantitative\", \"axis\": {\"title\": \"Days since 100th case\"}, \"field\": \"sinceDay0\"}, \"y\": {\"type\": \"quantitative\", \"axis\": {\"title\": \"Cumulative cases\"}, \"field\": \"total_cases\", \"scale\": {\"type\": \"log\"}}}, \"height\": 450, \"selection\": {\"selector001\": {\"type\": \"multi\", \"fields\": [\"region\"], \"bind\": \"legend\"}}, \"title\": \"Italy: total cases since 100th case\", \"width\": 450}, {\"layer\": [{\"data\": {\"name\": \"data-c37b0600efa89cfc8e618f4bf8a6529f\"}, \"mark\": {\"type\": \"line\", \"clip\": true, \"opacity\": 0.2}, \"encoding\": {\"color\": {\"type\": \"nominal\", \"field\": \"doubling period\"}, \"x\": {\"type\": \"quantitative\", \"field\": \"day\", \"scale\": {\"domain\": [1, 40]}}, \"y\": {\"type\": \"quantitative\", \"field\": \"case\", \"scale\": {\"domain\": [100, 110000]}}}}, {\"data\": {\"name\": \"data-ae1a0d00acf4a02cfdd9ee43d30a3205\"}, \"mark\": {\"type\": \"text\", \"align\": \"right\", \"baseline\": \"bottom\", \"dx\": 0, \"opacity\": 0.5, \"size\": 15}, \"encoding\": {\"text\": {\"type\": \"nominal\", \"field\": \"labelText\"}, \"x\": {\"type\": \"quantitative\", \"field\": \"labelX\"}, \"y\": {\"type\": \"quantitative\", \"field\": \"labelY\"}}}]}, {\"layer\": [{\"mark\": {\"type\": \"line\", \"color\": \"steelblue\"}, \"encoding\": {\"x\": {\"type\": \"quantitative\", \"field\": \"sinceDay0\"}, \"y\": {\"type\": \"quantitative\", \"field\": \"total_cases\"}}}, {\"mark\": {\"type\": \"text\", \"dy\": -10}, \"encoding\": {\"text\": {\"type\": \"nominal\", \"field\": \"country_label\"}, \"x\": {\"type\": \"quantitative\", \"field\": \"sinceDay0\"}, \"y\": {\"type\": \"quantitative\", \"field\": \"total_cases\"}}, \"transform\": [{\"filter\": \"datum['sinceDay0'] == 36\"}]}], \"data\": {\"name\": \"data-162788b55f9de6c0d69e1c52f8335d0e\"}}], \"$schema\": \"https://vega.github.io/schema/vega-lite/v4.0.2.json\", \"datasets\": {\"data-2f94cb95d9712fbd3186532ecae967d0\": [{\"index\": 399, \"date\": \"2020-03-14T17:00:00\", \"country_code\": \"ITA\", \"region_code\": 13, \"region\": \"Abruzzo\", \"latitude\": 42.35122196, \"longitude\": 13.39843823, \"hospitalised_with_symptoms\": 51, \"intensive_care\": 14, \"total_hospitalised\": 65, \"home_confinement\": 41, \"total_positive\": 106, \"new_current_positive\": 23, \"new_positive\": 23, \"recovered\": 4, \"dead\": 2, \"total_cases\": 112, \"tests\": 1232, \"total_cases_100k\": 8.559739722771429, \"tests_100k\": 94.15713695048572, \"dead_100k\": 0.15285249504948983, \"sinceDay0\": 0}, {\"index\": 420, \"date\": \"2020-03-15T17:00:00\", \"country_code\": \"ITA\", \"region_code\": 13, \"region\": \"Abruzzo\", \"latitude\": 42.35122196, \"longitude\": 13.39843823, \"hospitalised_with_symptoms\": 72, \"intensive_care\": 28, \"total_hospitalised\": 100, \"home_confinement\": 28, \"total_positive\": 128, \"new_current_positive\": 22, \"new_positive\": 25, \"recovered\": 6, \"dead\": 3, \"total_cases\": 137, \"tests\": 1419, \"total_cases_100k\": 10.470395910890053, \"tests_100k\": 108.44884523761303, \"dead_100k\": 0.22927874257423472, \"sinceDay0\": 1}, {\"index\": 441, \"date\": \"2020-03-16T17:00:00\", \"country_code\": \"ITA\", \"region_code\": 13, \"region\": \"Abruzzo\", \"latitude\": 42.35122196, \"longitude\": 13.39843823, \"hospitalised_with_symptoms\": 71, \"intensive_care\": 37, \"total_hospitalised\": 108, \"home_confinement\": 57, \"total_positive\": 165, \"new_current_positive\": 37, \"new_positive\": 39, \"recovered\": 7, \"dead\": 4, \"total_cases\": 176, \"tests\": 1533, \"total_cases_100k\": 13.451019564355104, \"tests_100k\": 117.16143745543394, \"dead_100k\": 0.30570499009897967, \"sinceDay0\": 2}, {\"index\": 462, \"date\": \"2020-03-17T17:00:00\", \"country_code\": \"ITA\", \"region_code\": 13, \"region\": \"Abruzzo\", \"latitude\": 42.35122196, \"longitude\": 13.39843823, \"hospitalised_with_symptoms\": 94, \"intensive_care\": 32, \"total_hospitalised\": 126, \"home_confinement\": 90, \"total_positive\": 216, \"new_current_positive\": 51, \"new_positive\": 53, \"recovered\": 7, \"dead\": 6, \"total_cases\": 229, \"tests\": 1688, \"total_cases_100k\": 17.501610683166582, \"tests_100k\": 129.0075058217694, \"dead_100k\": 0.45855748514846945, \"sinceDay0\": 3}, {\"index\": 483, \"date\": \"2020-03-18T17:00:00\", \"country_code\": \"ITA\", \"region_code\": 13, \"region\": \"Abruzzo\", \"latitude\": 42.35122196, \"longitude\": 13.39843823, \"hospitalised_with_symptoms\": 99, \"intensive_care\": 41, \"total_hospitalised\": 140, \"home_confinement\": 109, \"total_positive\": 249, \"new_current_positive\": 33, \"new_positive\": 34, \"recovered\": 7, \"dead\": 7, \"total_cases\": 263, \"tests\": 2054, \"total_cases_100k\": 20.10010309900791, \"tests_100k\": 156.97951241582604, \"dead_100k\": 0.5349837326732143, \"sinceDay0\": 4}, {\"index\": 504, \"date\": \"2020-03-19T17:00:00\", \"country_code\": \"ITA\", \"region_code\": 13, \"region\": \"Abruzzo\", \"latitude\": 42.35122196, \"longitude\": 13.39843823, \"hospitalised_with_symptoms\": 181, \"intensive_care\": 47, \"total_hospitalised\": 228, \"home_confinement\": 138, \"total_positive\": 366, \"new_current_positive\": 117, \"new_positive\": 122, \"recovered\": 8, \"dead\": 11, \"total_cases\": 385, \"tests\": 2409, \"total_cases_100k\": 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\"new_positive\": 4050, \"recovered\": 14620, \"dead\": 11591, \"total_cases\": 101739, \"tests\": 477359, \"New cases per day\": 4050.0, \"sinceDay0\": 35, \"country_label\": \"Italy\"}, {\"index\": 36, \"date\": \"2020-03-31T17:00:00\", \"country_code\": \"ITA\", \"hospitalised_with_symptoms\": 28192, \"intensive_care\": 4023, \"total_hospitalised\": 32215, \"home_confinement\": 45420, \"total_positive\": 77635, \"new_current_positive\": 2107, \"new_positive\": 4053, \"recovered\": 15729, \"dead\": 12428, \"total_cases\": 105792, \"tests\": 506968, \"New cases per day\": 4053.0, \"sinceDay0\": 36, \"country_label\": \"Italy\"}]}}, {\"mode\": \"vega-lite\"});\n",
+       "</script>"
+      ],
+      "text/plain": [
+       "alt.LayerChart(...)"
+      ]
+     },
+     "execution_count": 16,
+     "metadata": {},
+     "output_type": "execute_result"
+    }
+   ],
+   "source": [
+    "since_100th_case = helper.make_since_df(df_regions, column='total_cases', region_column='region')\n",
+    "\n",
+    "base = alt.Chart(since_100th_case, title=\"Italy: total cases since 100th case\").mark_line(interpolate='basis')\n",
+    "\n",
+    "line_chart = plotting.make_region_since_chart(\n",
+    "    base,\n",
+    "    'total_cases',\n",
+    "    'sinceDay0',\n",
+    "    'region',\n",
+    "    'Days since 100th case',\n",
+    "    'Cumulative cases', \n",
+    "    'Cases',\n",
+    "    'Region'\n",
+    ").properties(\n",
+    "    width=450,\n",
+    "    height=450\n",
+    ")\n",
+    "\n",
+    "rule_chart = plotting.make_rule_chart(max_case=110000, max_days=40, pos_day=(12,50000), pos_3days=(35,300000), pos_week=(40,2000))\n",
+    "\n",
+    "# add the total cases for italy to the chart\n",
+    "since_100th_case_all = helper.make_since_df(df_national, start_case=100, column='total_cases', region_column='country_code')\n",
+    "since_100th_case_all['country_label'] = 'Italy'\n",
+    "italy = alt.Chart(since_100th_case_all).mark_line(color='steelblue').encode(x='sinceDay0', y='total_cases')\n",
+    "italy += italy.mark_text(dy=-10).encode(text='country_label').transform_filter(f\"datum['sinceDay0'] == {len(since_100th_case_all)-1}\")\n",
+    "\n",
+    "\n",
+    "line_chart + rule_chart + italy"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 17,
+   "metadata": {
+    "papermill": {
+     "duration": 0.288537,
+     "end_time": "2020-04-01T11:27:18.804085",
+     "exception": false,
+     "start_time": "2020-04-01T11:27:18.515548",
+     "status": "completed"
+    },
+    "tags": []
+   },
+   "outputs": [
+    {
+     "data": {
+      "text/html": [
+       "\n",
+       "<div id=\"altair-viz-e6da6a7cee1343c6a7e9626a54f9c04f\"></div>\n",
+       "<script type=\"text/javascript\">\n",
+       "  (function(spec, embedOpt){\n",
+       "    const outputDiv = document.getElementById(\"altair-viz-e6da6a7cee1343c6a7e9626a54f9c04f\");\n",
+       "    const paths = {\n",
+       "      \"vega\": \"https://cdn.jsdelivr.net/npm//vega@5?noext\",\n",
+       "      \"vega-lib\": \"https://cdn.jsdelivr.net/npm//vega-lib?noext\",\n",
+       "      \"vega-lite\": \"https://cdn.jsdelivr.net/npm//vega-lite@4.0.2?noext\",\n",
+       "      \"vega-embed\": \"https://cdn.jsdelivr.net/npm//vega-embed@6?noext\",\n",
+       "    };\n",
+       "\n",
+       "    function loadScript(lib) {\n",
+       "      return new Promise(function(resolve, reject) {\n",
+       "        var s = document.createElement('script');\n",
+       "        s.src = paths[lib];\n",
+       "        s.async = true;\n",
+       "        s.onload = () => resolve(paths[lib]);\n",
+       "        s.onerror = () => reject(`Error loading script: ${paths[lib]}`);\n",
+       "        document.getElementsByTagName(\"head\")[0].appendChild(s);\n",
+       "      });\n",
+       "    }\n",
+       "\n",
+       "    function showError(err) {\n",
+       "      outputDiv.innerHTML = `<div class=\"error\" style=\"color:red;\">${err}</div>`;\n",
+       "      throw err;\n",
+       "    }\n",
+       "\n",
+       "    function displayChart(vegaEmbed) {\n",
+       "      vegaEmbed(outputDiv, spec, embedOpt)\n",
+       "        .catch(err => showError(`Javascript Error: ${err.message}<br>This usually means there's a typo in your chart specification. See the javascript console for the full traceback.`));\n",
+       "    }\n",
+       "\n",
+       "    if(typeof define === \"function\" && define.amd) {\n",
+       "      requirejs.config({paths});\n",
+       "      require([\"vega-embed\"], displayChart, err => showError(`Error loading script: ${err.message}`));\n",
+       "    } else if (typeof vegaEmbed === \"function\") {\n",
+       "      displayChart(vegaEmbed);\n",
+       "    } else {\n",
+       "      loadScript(\"vega\")\n",
+       "        .then(() => loadScript(\"vega-lite\"))\n",
+       "        .then(() => loadScript(\"vega-embed\"))\n",
+       "        .catch(showError)\n",
+       "        .then(() => displayChart(vegaEmbed));\n",
+       "    }\n",
+       "  })({\"config\": {\"view\": {\"continuousWidth\": 400, \"continuousHeight\": 300}}, \"layer\": [{\"data\": {\"name\": \"data-1147f0f0b65958e73c839ade8e07b074\"}, \"mark\": \"line\", \"encoding\": {\"color\": {\"type\": \"nominal\", \"field\": \"region\", \"legend\": {\"title\": \"Region\"}}, \"opacity\": {\"condition\": {\"value\": 1, \"selection\": \"selector002\"}, \"value\": 0.2}, \"tooltip\": [{\"type\": \"nominal\", \"field\": \"region\", \"title\": \"Region\"}, {\"type\": \"quantitative\", \"field\": \"dead\", \"title\": \"Deaths\"}, {\"type\": \"temporal\", \"field\": \"date\", \"title\": \"Date\"}], \"x\": {\"type\": \"quantitative\", \"axis\": {\"title\": \"Days since 10th death\"}, \"field\": \"sinceDay0\"}, \"y\": {\"type\": \"quantitative\", \"axis\": {\"title\": \"Cumulative deaths\"}, \"field\": \"dead\", \"scale\": {\"type\": \"log\"}}}, \"height\": 450, \"selection\": {\"selector002\": {\"type\": \"multi\", \"fields\": [\"region\"], \"bind\": \"legend\"}}, \"title\": \"Italy: total deaths since 10th death\", \"width\": 450}, {\"layer\": [{\"data\": {\"name\": \"data-e6a039ecd947cfb0fd9bc1afc28ed1fb\"}, \"mark\": {\"type\": \"line\", \"clip\": true, \"opacity\": 0.2}, \"encoding\": {\"color\": {\"type\": \"nominal\", \"field\": \"doubling period\"}, \"x\": {\"type\": \"quantitative\", \"field\": \"day\", \"scale\": {\"domain\": [1, 40]}}, \"y\": {\"type\": \"quantitative\", \"field\": \"case\", \"scale\": {\"domain\": [10, 50000]}}}}, {\"data\": {\"name\": \"data-8aca84b2cb38af04a943b70d0d659a8e\"}, \"mark\": {\"type\": \"text\", \"align\": \"right\", \"baseline\": \"bottom\", \"dx\": 0, \"opacity\": 0.5, \"size\": 15}, \"encoding\": {\"text\": {\"type\": \"nominal\", \"field\": \"labelText\"}, \"x\": {\"type\": \"quantitative\", \"field\": \"labelX\"}, \"y\": {\"type\": \"quantitative\", \"field\": \"labelY\"}}}]}, {\"layer\": [{\"mark\": {\"type\": \"line\", \"color\": \"steelblue\"}, \"encoding\": {\"x\": {\"type\": \"quantitative\", 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11, \"total_cases\": 385, \"tests\": 2409, \"total_cases_100k\": 29.42410529702679, \"tests_100k\": 184.11083028711047, \"dead_100k\": 0.840688722772194, \"sinceDay0\": 0}, {\"index\": 525, \"date\": \"2020-03-20T17:00:00\", \"country_code\": \"ITA\", \"region_code\": 13, \"region\": \"Abruzzo\", \"latitude\": 42.35122196, \"longitude\": 13.39843823, \"hospitalised_with_symptoms\": 190, \"intensive_care\": 48, \"total_hospitalised\": 238, \"home_confinement\": 184, \"total_positive\": 422, \"new_current_positive\": 56, \"new_positive\": 64, \"recovered\": 10, \"dead\": 17, \"total_cases\": 449, \"tests\": 2695, \"total_cases_100k\": 34.315385138610466, \"tests_100k\": 205.96873707918752, \"dead_100k\": 1.2992462079206635, \"sinceDay0\": 1}, {\"index\": 546, \"date\": \"2020-03-21T17:00:00\", \"country_code\": \"ITA\", \"region_code\": 13, \"region\": \"Abruzzo\", \"latitude\": 42.35122196, \"longitude\": 13.39843823, \"hospitalised_with_symptoms\": 185, \"intensive_care\": 44, \"total_hospitalised\": 229, \"home_confinement\": 265, \"total_positive\": 494, \"new_current_positive\": 72, \"new_positive\": 80, \"recovered\": 13, \"dead\": 22, \"total_cases\": 529, \"tests\": 3035, \"total_cases_100k\": 40.42948494059006, \"tests_100k\": 231.9536612376008, \"dead_100k\": 1.681377445544388, \"sinceDay0\": 2}, {\"index\": 567, \"date\": \"2020-03-22T17:00:00\", \"country_code\": \"ITA\", \"region_code\": 13, \"region\": \"Abruzzo\", \"latitude\": 42.35122196, \"longitude\": 13.39843823, \"hospitalised_with_symptoms\": 218, \"intensive_care\": 49, \"total_hospitalised\": 267, \"home_confinement\": 272, \"total_positive\": 539, \"new_current_positive\": 45, \"new_positive\": 58, \"recovered\": 15, \"dead\": 33, \"total_cases\": 587, \"tests\": 3375, \"total_cases_100k\": 44.86220729702526, \"tests_100k\": 257.93858539601405, \"dead_100k\": 2.5220661683165817, \"sinceDay0\": 3}, {\"index\": 588, \"date\": \"2020-03-23T17:00:00\", \"country_code\": \"ITA\", \"region_code\": 13, \"region\": \"Abruzzo\", \"latitude\": 42.35122196, \"longitude\": 13.39843823, \"hospitalised_with_symptoms\": 228, \"intensive_care\": 52, \"total_hospitalised\": 280, \"home_confinement\": 325, \"total_positive\": 605, \"new_current_positive\": 66, \"new_positive\": 76, \"recovered\": 20, \"dead\": 38, \"total_cases\": 663, \"tests\": 3674, \"total_cases_100k\": 50.670602108905875, \"tests_100k\": 280.79003340591277, \"dead_100k\": 2.904197405940306, \"sinceDay0\": 4}, {\"index\": 609, \"date\": \"2020-03-24T17:00:00\", \"country_code\": \"ITA\", \"region_code\": 13, \"region\": \"Abruzzo\", \"latitude\": 42.35122196, \"longitude\": 13.39843823, \"hospitalised_with_symptoms\": 234, \"intensive_care\": 57, \"total_hospitalised\": 291, \"home_confinement\": 331, \"total_positive\": 622, \"new_current_positive\": 17, \"new_positive\": 26, \"recovered\": 21, \"dead\": 46, \"total_cases\": 689, \"tests\": 4294, \"total_cases_100k\": 52.65768454454924, \"tests_100k\": 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\"home_confinement\": 217, \"total_positive\": 333, \"new_current_positive\": 29, \"new_positive\": 32, \"recovered\": 7, \"dead\": 11, \"total_cases\": 351, \"tests\": 5058, \"total_cases_100k\": 18.02652209841043, \"tests_100k\": 259.76680562324776, \"dead_100k\": 0.5649337409758255, \"sinceDay0\": 1}, {\"index\": 654, \"date\": \"2020-03-26T17:00:00\", \"country_code\": \"ITA\", \"region_code\": 18, \"region\": \"Calabria\", \"latitude\": 38.90597598, \"longitude\": 16.59440194, \"hospitalised_with_symptoms\": 101, \"intensive_care\": 23, \"total_hospitalised\": 124, \"home_confinement\": 248, \"total_positive\": 372, \"new_current_positive\": 39, \"new_positive\": 42, \"recovered\": 7, \"dead\": 14, \"total_cases\": 393, \"tests\": 5933, \"total_cases_100k\": 20.183541836681766, \"tests_100k\": 304.70471683723383, \"dead_100k\": 0.7190065794237779, \"sinceDay0\": 2}, {\"index\": 675, \"date\": \"2020-03-27T17:00:00\", \"country_code\": \"ITA\", \"region_code\": 18, \"region\": \"Calabria\", \"latitude\": 38.90597598, \"longitude\": 16.59440194, \"hospitalised_with_symptoms\": 103, \"intensive_care\": 22, \"total_hospitalised\": 125, \"home_confinement\": 344, \"total_positive\": 469, \"new_current_positive\": 97, \"new_positive\": 101, \"recovered\": 7, \"dead\": 18, \"total_cases\": 494, \"tests\": 6901, \"total_cases_100k\": 25.370660731096162, \"tests_100k\": 354.4188860431065, \"dead_100k\": 0.9244370306877143, \"sinceDay0\": 3}, {\"index\": 696, \"date\": \"2020-03-28T17:00:00\", \"country_code\": \"ITA\", \"region_code\": 18, \"region\": \"Calabria\", \"latitude\": 38.90597598, \"longitude\": 16.59440194, \"hospitalised_with_symptoms\": 107, \"intensive_care\": 22, \"total_hospitalised\": 129, \"home_confinement\": 394, \"total_positive\": 523, \"new_current_positive\": 54, \"new_positive\": 61, \"recovered\": 11, \"dead\": 21, \"total_cases\": 555, \"tests\": 7760, \"total_cases_100k\": 28.503475112871193, \"tests_100k\": 398.53507545203684, 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cases per day\": 466.0, \"sinceDay0\": 7, \"country_label\": \"Italy\"}, {\"index\": 9, \"date\": \"2020-03-04T18:00:00\", \"country_code\": \"ITA\", \"hospitalised_with_symptoms\": 1346, \"intensive_care\": 295, \"total_hospitalised\": 1641, \"home_confinement\": 1065, \"total_positive\": 2706, \"new_current_positive\": 443, \"new_positive\": 587, \"recovered\": 276, \"dead\": 107, \"total_cases\": 3089, \"tests\": 29837, \"New cases per day\": 587.0, \"sinceDay0\": 8, \"country_label\": \"Italy\"}, {\"index\": 10, \"date\": \"2020-03-05T18:00:00\", \"country_code\": \"ITA\", \"hospitalised_with_symptoms\": 1790, \"intensive_care\": 351, \"total_hospitalised\": 2141, \"home_confinement\": 1155, \"total_positive\": 3296, \"new_current_positive\": 590, \"new_positive\": 769, \"recovered\": 414, \"dead\": 148, \"total_cases\": 3858, \"tests\": 32362, \"New cases per day\": 769.0, \"sinceDay0\": 9, \"country_label\": \"Italy\"}, {\"index\": 11, \"date\": \"2020-03-06T18:00:00\", \"country_code\": \"ITA\", \"hospitalised_with_symptoms\": 2394, \"intensive_care\": 462, \"total_hospitalised\": 2856, \"home_confinement\": 1060, \"total_positive\": 3916, \"new_current_positive\": 620, \"new_positive\": 778, \"recovered\": 523, \"dead\": 197, \"total_cases\": 4636, \"tests\": 36359, \"New cases per day\": 778.0, \"sinceDay0\": 10, \"country_label\": \"Italy\"}, {\"index\": 12, \"date\": \"2020-03-07T18:00:00\", \"country_code\": \"ITA\", \"hospitalised_with_symptoms\": 2651, \"intensive_care\": 567, \"total_hospitalised\": 3218, \"home_confinement\": 1843, \"total_positive\": 5061, \"new_current_positive\": 1145, \"new_positive\": 1247, \"recovered\": 589, \"dead\": 233, \"total_cases\": 5883, \"tests\": 42062, \"New cases per day\": 1247.0, \"sinceDay0\": 11, \"country_label\": \"Italy\"}, {\"index\": 13, \"date\": \"2020-03-08T18:00:00\", \"country_code\": \"ITA\", \"hospitalised_with_symptoms\": 3557, \"intensive_care\": 650, \"total_hospitalised\": 4207, \"home_confinement\": 2180, \"total_positive\": 6387, \"new_current_positive\": 1326, \"new_positive\": 1492, \"recovered\": 622, \"dead\": 366, \"total_cases\": 7375, \"tests\": 49937, \"New cases per day\": 1492.0, \"sinceDay0\": 12, \"country_label\": \"Italy\"}, {\"index\": 14, \"date\": \"2020-03-09T18:00:00\", \"country_code\": \"ITA\", \"hospitalised_with_symptoms\": 4316, \"intensive_care\": 733, \"total_hospitalised\": 5049, \"home_confinement\": 2936, \"total_positive\": 7985, \"new_current_positive\": 1598, \"new_positive\": 1797, \"recovered\": 724, \"dead\": 463, \"total_cases\": 9172, \"tests\": 53826, \"New cases per day\": 1797.0, \"sinceDay0\": 13, \"country_label\": \"Italy\"}, {\"index\": 15, \"date\": \"2020-03-10T18:00:00\", \"country_code\": \"ITA\", \"hospitalised_with_symptoms\": 5038, \"intensive_care\": 877, \"total_hospitalised\": 5915, \"home_confinement\": 2599, \"total_positive\": 8514, \"new_current_positive\": 529, \"new_positive\": 977, \"recovered\": 1004, \"dead\": 631, \"total_cases\": 10149, \"tests\": 60761, \"New cases per day\": 977.0, \"sinceDay0\": 14, \"country_label\": \"Italy\"}, {\"index\": 16, \"date\": \"2020-03-11T17:00:00\", \"country_code\": \"ITA\", \"hospitalised_with_symptoms\": 5838, \"intensive_care\": 1028, \"total_hospitalised\": 6866, \"home_confinement\": 3724, \"total_positive\": 10590, \"new_current_positive\": 2076, \"new_positive\": 2313, \"recovered\": 1045, \"dead\": 827, \"total_cases\": 12462, \"tests\": 73154, \"New cases per day\": 2313.0, \"sinceDay0\": 15, \"country_label\": \"Italy\"}, {\"index\": 17, \"date\": \"2020-03-12T17:00:00\", \"country_code\": \"ITA\", \"hospitalised_with_symptoms\": 6650, \"intensive_care\": 1153, \"total_hospitalised\": 7803, \"home_confinement\": 5036, \"total_positive\": 12839, \"new_current_positive\": 2249, \"new_positive\": 2651, \"recovered\": 1258, \"dead\": 1016, \"total_cases\": 15113, \"tests\": 86011, \"New cases per day\": 2651.0, \"sinceDay0\": 16, \"country_label\": \"Italy\"}, {\"index\": 18, \"date\": \"2020-03-13T17:00:00\", \"country_code\": \"ITA\", \"hospitalised_with_symptoms\": 7426, \"intensive_care\": 1328, \"total_hospitalised\": 8754, \"home_confinement\": 6201, \"total_positive\": 14955, \"new_current_positive\": 2116, \"new_positive\": 2547, \"recovered\": 1439, \"dead\": 1266, \"total_cases\": 17660, \"tests\": 97488, \"New cases per day\": 2547.0, \"sinceDay0\": 17, \"country_label\": \"Italy\"}, {\"index\": 19, \"date\": \"2020-03-14T17:00:00\", \"country_code\": \"ITA\", \"hospitalised_with_symptoms\": 8372, \"intensive_care\": 1518, \"total_hospitalised\": 9890, \"home_confinement\": 7860, \"total_positive\": 17750, \"new_current_positive\": 2795, \"new_positive\": 3497, \"recovered\": 1966, \"dead\": 1441, \"total_cases\": 21157, \"tests\": 109170, \"New cases per day\": 3497.0, \"sinceDay0\": 18, \"country_label\": \"Italy\"}, {\"index\": 20, \"date\": \"2020-03-15T17:00:00\", \"country_code\": \"ITA\", \"hospitalised_with_symptoms\": 9663, \"intensive_care\": 1672, \"total_hospitalised\": 11335, \"home_confinement\": 9268, \"total_positive\": 20603, \"new_current_positive\": 2853, \"new_positive\": 3590, \"recovered\": 2335, \"dead\": 1809, \"total_cases\": 24747, \"tests\": 124899, \"New cases per day\": 3590.0, \"sinceDay0\": 19, \"country_label\": \"Italy\"}, {\"index\": 21, \"date\": \"2020-03-16T17:00:00\", \"country_code\": \"ITA\", \"hospitalised_with_symptoms\": 11025, \"intensive_care\": 1851, \"total_hospitalised\": 12876, \"home_confinement\": 10197, \"total_positive\": 23073, \"new_current_positive\": 2470, \"new_positive\": 3233, \"recovered\": 2749, \"dead\": 2158, \"total_cases\": 27980, \"tests\": 137962, \"New cases per day\": 3233.0, \"sinceDay0\": 20, \"country_label\": \"Italy\"}, {\"index\": 22, \"date\": \"2020-03-17T17:00:00\", \"country_code\": \"ITA\", \"hospitalised_with_symptoms\": 12894, \"intensive_care\": 2060, \"total_hospitalised\": 14954, \"home_confinement\": 11108, \"total_positive\": 26062, \"new_current_positive\": 2989, \"new_positive\": 3526, \"recovered\": 2941, \"dead\": 2503, \"total_cases\": 31506, \"tests\": 148657, \"New cases per day\": 3526.0, \"sinceDay0\": 21, \"country_label\": \"Italy\"}, {\"index\": 23, \"date\": \"2020-03-18T17:00:00\", \"country_code\": \"ITA\", \"hospitalised_with_symptoms\": 14363, \"intensive_care\": 2257, \"total_hospitalised\": 16620, \"home_confinement\": 12090, \"total_positive\": 28710, \"new_current_positive\": 2648, \"new_positive\": 4207, \"recovered\": 4025, \"dead\": 2978, \"total_cases\": 35713, \"tests\": 165541, \"New cases per day\": 4207.0, \"sinceDay0\": 22, \"country_label\": \"Italy\"}, {\"index\": 24, \"date\": \"2020-03-19T17:00:00\", \"country_code\": \"ITA\", \"hospitalised_with_symptoms\": 15757, \"intensive_care\": 2498, \"total_hospitalised\": 18255, \"home_confinement\": 14935, \"total_positive\": 33190, \"new_current_positive\": 4480, \"new_positive\": 5322, \"recovered\": 4440, \"dead\": 3405, \"total_cases\": 41035, \"tests\": 182777, \"New cases per day\": 5322.0, \"sinceDay0\": 23, \"country_label\": \"Italy\"}, {\"index\": 25, \"date\": \"2020-03-20T17:00:00\", \"country_code\": \"ITA\", \"hospitalised_with_symptoms\": 16020, \"intensive_care\": 2655, \"total_hospitalised\": 18675, \"home_confinement\": 19185, \"total_positive\": 37860, \"new_current_positive\": 4670, \"new_positive\": 5986, \"recovered\": 5129, \"dead\": 4032, \"total_cases\": 47021, \"tests\": 206886, \"New cases per day\": 5986.0, \"sinceDay0\": 24, \"country_label\": \"Italy\"}, {\"index\": 26, \"date\": \"2020-03-21T17:00:00\", \"country_code\": \"ITA\", \"hospitalised_with_symptoms\": 17708, \"intensive_care\": 2857, \"total_hospitalised\": 20565, \"home_confinement\": 22116, \"total_positive\": 42681, \"new_current_positive\": 4821, \"new_positive\": 6557, \"recovered\": 6072, \"dead\": 4825, \"total_cases\": 53578, \"tests\": 233222, \"New cases per day\": 6557.0, \"sinceDay0\": 25, \"country_label\": \"Italy\"}, {\"index\": 27, \"date\": \"2020-03-22T17:00:00\", \"country_code\": \"ITA\", \"hospitalised_with_symptoms\": 19846, \"intensive_care\": 3009, \"total_hospitalised\": 22855, \"home_confinement\": 23783, \"total_positive\": 46638, \"new_current_positive\": 3957, \"new_positive\": 5560, \"recovered\": 7024, \"dead\": 5476, \"total_cases\": 59138, \"tests\": 258402, \"New cases per day\": 5560.0, \"sinceDay0\": 26, \"country_label\": \"Italy\"}, {\"index\": 28, \"date\": \"2020-03-23T17:00:00\", \"country_code\": \"ITA\", \"hospitalised_with_symptoms\": 20692, \"intensive_care\": 3204, \"total_hospitalised\": 23896, \"home_confinement\": 26522, \"total_positive\": 50418, \"new_current_positive\": 3780, \"new_positive\": 4789, \"recovered\": 7432, \"dead\": 6077, \"total_cases\": 63927, \"tests\": 275468, \"New cases per day\": 4789.0, \"sinceDay0\": 27, \"country_label\": \"Italy\"}, {\"index\": 29, \"date\": \"2020-03-24T17:00:00\", \"country_code\": \"ITA\", \"hospitalised_with_symptoms\": 21937, \"intensive_care\": 3396, \"total_hospitalised\": 25333, \"home_confinement\": 28697, \"total_positive\": 54030, \"new_current_positive\": 3612, \"new_positive\": 5249, \"recovered\": 8326, \"dead\": 6820, \"total_cases\": 69176, \"tests\": 296964, \"New cases per day\": 5249.0, \"sinceDay0\": 28, \"country_label\": \"Italy\"}, {\"index\": 30, \"date\": \"2020-03-25T17:00:00\", \"country_code\": \"ITA\", \"hospitalised_with_symptoms\": 23112, \"intensive_care\": 3489, \"total_hospitalised\": 26601, \"home_confinement\": 30920, \"total_positive\": 57521, \"new_current_positive\": 3491, \"new_positive\": 5210, \"recovered\": 9362, \"dead\": 7503, \"total_cases\": 74386, \"tests\": 324445, \"New cases per day\": 5210.0, \"sinceDay0\": 29, \"country_label\": \"Italy\"}, {\"index\": 31, \"date\": \"2020-03-26T17:00:00\", \"country_code\": \"ITA\", \"hospitalised_with_symptoms\": 24753, \"intensive_care\": 3612, \"total_hospitalised\": 28365, \"home_confinement\": 33648, \"total_positive\": 62013, \"new_current_positive\": 4492, \"new_positive\": 6153, \"recovered\": 10361, \"dead\": 8165, \"total_cases\": 80539, \"tests\": 361060, \"New cases per day\": 6153.0, \"sinceDay0\": 30, \"country_label\": \"Italy\"}, {\"index\": 32, \"date\": \"2020-03-27T17:00:00\", \"country_code\": \"ITA\", \"hospitalised_with_symptoms\": 26029, \"intensive_care\": 3732, \"total_hospitalised\": 29761, \"home_confinement\": 36653, \"total_positive\": 66414, \"new_current_positive\": 4401, \"new_positive\": 5959, \"recovered\": 10950, \"dead\": 9134, \"total_cases\": 86498, \"tests\": 394079, \"New cases per day\": 5959.0, \"sinceDay0\": 31, \"country_label\": \"Italy\"}, {\"index\": 33, \"date\": \"2020-03-28T17:00:00\", \"country_code\": \"ITA\", \"hospitalised_with_symptoms\": 26676, \"intensive_care\": 3856, \"total_hospitalised\": 30532, \"home_confinement\": 39533, \"total_positive\": 70065, \"new_current_positive\": 3651, \"new_positive\": 5974, \"recovered\": 12384, \"dead\": 10023, \"total_cases\": 92472, \"tests\": 429526, \"New cases per day\": 5974.0, \"sinceDay0\": 32, \"country_label\": \"Italy\"}, {\"index\": 34, \"date\": \"2020-03-29T17:00:00\", \"country_code\": \"ITA\", \"hospitalised_with_symptoms\": 27386, \"intensive_care\": 3906, \"total_hospitalised\": 31292, \"home_confinement\": 42588, \"total_positive\": 73880, \"new_current_positive\": 3815, \"new_positive\": 5217, \"recovered\": 13030, \"dead\": 10779, \"total_cases\": 97689, \"tests\": 454030, \"New cases per day\": 5217.0, \"sinceDay0\": 33, \"country_label\": \"Italy\"}, {\"index\": 35, \"date\": \"2020-03-30T17:00:00\", \"country_code\": \"ITA\", \"hospitalised_with_symptoms\": 27795, \"intensive_care\": 3981, \"total_hospitalised\": 31776, \"home_confinement\": 43752, \"total_positive\": 75528, \"new_current_positive\": 1648, \"new_positive\": 4050, \"recovered\": 14620, \"dead\": 11591, \"total_cases\": 101739, \"tests\": 477359, \"New cases per day\": 4050.0, \"sinceDay0\": 34, \"country_label\": \"Italy\"}, {\"index\": 36, \"date\": \"2020-03-31T17:00:00\", \"country_code\": \"ITA\", \"hospitalised_with_symptoms\": 28192, \"intensive_care\": 4023, \"total_hospitalised\": 32215, \"home_confinement\": 45420, \"total_positive\": 77635, \"new_current_positive\": 2107, \"new_positive\": 4053, \"recovered\": 15729, \"dead\": 12428, \"total_cases\": 105792, \"tests\": 506968, \"New cases per day\": 4053.0, \"sinceDay0\": 35, \"country_label\": \"Italy\"}]}}, {\"mode\": \"vega-lite\"});\n",
+       "</script>"
+      ],
+      "text/plain": [
+       "alt.LayerChart(...)"
+      ]
+     },
+     "execution_count": 17,
+     "metadata": {},
+     "output_type": "execute_result"
+    }
+   ],
+   "source": [
+    "since_10th_death = helper.make_since_df(df_regions, start_case=10, column='dead', region_column='region')\n",
+    "\n",
+    "base = alt.Chart(since_10th_death, title=\"Italy: total deaths since 10th death\")\n",
+    "line_chart = plotting.make_region_since_chart(\n",
+    "    base,\n",
+    "    'dead',\n",
+    "    'sinceDay0',\n",
+    "    'region',\n",
+    "    'Days since 10th death',\n",
+    "    'Cumulative deaths', \n",
+    "    'Deaths',\n",
+    "    'Region'\n",
+    ").properties(\n",
+    "    width=450,\n",
+    "    height=450\n",
+    ")\n",
+    "\n",
+    "rule_chart = plotting.make_rule_chart(\n",
+    "    start_case=10, \n",
+    "    max_case=50000, \n",
+    "    max_days=40, \n",
+    "    pos_day=(12,50000), \n",
+    "    pos_3days=(35,20000), \n",
+    "    pos_week=(40,100)) \n",
+    "\n",
+    "\n",
+    "# add the total deaths for italy to the chart\n",
+    "since_10th_death_all = helper.make_since_df(df_national, start_case=10, column='dead', region_column='country_code')\n",
+    "since_10th_death_all['country_label'] = 'Italy'\n",
+    "italy = alt.Chart(since_10th_death_all).mark_line(color='steelblue').encode(x='sinceDay0', y='dead')\n",
+    "italy += italy.mark_text(dy=-10).encode(text='country_label').transform_filter(f\"datum['sinceDay0'] == {len(since_10th_death_all)-1}\")\n",
+    "\n",
+    "line_chart + rule_chart + italy"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {
+    "papermill": {
+     "duration": 0.054279,
+     "end_time": "2020-04-01T11:27:18.913932",
+     "exception": false,
+     "start_time": "2020-04-01T11:27:18.859653",
+     "status": "completed"
+    },
+    "tags": []
+   },
+   "outputs": [],
+   "source": []
   }
  ],
  "metadata": {
@@ -763,16 +1029,16 @@
    "version": "3.7.3"
   },
   "papermill": {
-   "duration": 3.777963,
-   "end_time": "2020-03-30T15:47:03.822983",
+   "duration": 5.219587,
+   "end_time": "2020-04-01T11:27:19.296853",
    "environment_variables": {},
    "exception": null,
-   "input_path": "notebooks/examples/italy-covid-19.ipynb",
+   "input_path": "/tmp/1e7j_ih5/notebooks/examples/italy-covid-19.ipynb",
    "output_path": "runs/italy-covid-19.ipynb",
    "parameters": {
-    "data_folder": "./data/covid-19-italy/"
+    "data_folder": "/tmp/1e7j_ih5/data/covid-19-italy"
    },
-   "start_time": "2020-03-30T15:47:00.045020",
+   "start_time": "2020-04-01T11:27:14.077266",
    "version": "1.1.0"
   }
  },
diff --git a/runs/openzh-covid-19-dashboard.run.ipynb b/runs/openzh-covid-19-dashboard.run.ipynb
index 1608d73..cdb1c6b 100644
--- a/runs/openzh-covid-19-dashboard.run.ipynb
+++ b/runs/openzh-covid-19-dashboard.run.ipynb
@@ -8,10 +8,32 @@
      "source_hidden": true
     },
     "papermill": {
-     "duration": 0.491154,
-     "end_time": "2020-03-31T08:26:33.375140",
+     "duration": 0.059168,
+     "end_time": "2020-04-01T11:27:10.070413",
      "exception": false,
-     "start_time": "2020-03-31T08:26:32.883986",
+     "start_time": "2020-04-01T11:27:10.011245",
+     "status": "completed"
+    },
+    "tags": []
+   },
+   "outputs": [],
+   "source": [
+    "%load_ext autoreload\n",
+    "%autoreload 2"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 2,
+   "metadata": {
+    "jupyter": {
+     "source_hidden": true
+    },
+    "papermill": {
+     "duration": 0.501301,
+     "end_time": "2020-04-01T11:27:10.588256",
+     "exception": false,
+     "start_time": "2020-04-01T11:27:10.086955",
      "status": "completed"
     },
     "tags": []
@@ -27,16 +49,16 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 2,
+   "execution_count": 3,
    "metadata": {
     "jupyter": {
      "source_hidden": true
     },
     "papermill": {
-     "duration": 0.027972,
-     "end_time": "2020-03-31T08:26:33.420505",
+     "duration": 0.043849,
+     "end_time": "2020-04-01T11:27:10.648303",
      "exception": false,
-     "start_time": "2020-03-31T08:26:33.392533",
+     "start_time": "2020-04-01T11:27:10.604454",
      "status": "completed"
     },
     "tags": [
@@ -51,16 +73,16 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 3,
+   "execution_count": 4,
    "metadata": {
     "jupyter": {
      "source_hidden": true
     },
     "papermill": {
-     "duration": 0.022894,
-     "end_time": "2020-03-31T08:26:33.458294",
+     "duration": 0.048339,
+     "end_time": "2020-04-01T11:27:10.708480",
      "exception": false,
-     "start_time": "2020-03-31T08:26:33.435400",
+     "start_time": "2020-04-01T11:27:10.660141",
      "status": "completed"
     },
     "tags": [
@@ -70,21 +92,21 @@
    "outputs": [],
    "source": [
     "# Parameters\n",
-    "data_path = \"/tmp/8s_42_7t/data/openzh-covid-19\"\n"
+    "data_path = \"/tmp/ec1jm71t/data/openzh-covid-19\"\n"
    ]
   },
   {
    "cell_type": "code",
-   "execution_count": 4,
+   "execution_count": 5,
    "metadata": {
     "jupyter": {
      "source_hidden": true
     },
     "papermill": {
-     "duration": 0.024849,
-     "end_time": "2020-03-31T08:26:33.491783",
+     "duration": 0.047199,
+     "end_time": "2020-04-01T11:27:10.772281",
      "exception": false,
-     "start_time": "2020-03-31T08:26:33.466934",
+     "start_time": "2020-04-01T11:27:10.725082",
      "status": "completed"
     },
     "tags": []
@@ -105,10 +127,10 @@
    "cell_type": "markdown",
    "metadata": {
     "papermill": {
-     "duration": 0.008422,
-     "end_time": "2020-03-31T08:26:33.510482",
+     "duration": 0.009101,
+     "end_time": "2020-04-01T11:27:10.796497",
      "exception": false,
-     "start_time": "2020-03-31T08:26:33.502060",
+     "start_time": "2020-04-01T11:27:10.787396",
      "status": "completed"
     },
     "tags": []
@@ -123,16 +145,16 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 5,
+   "execution_count": 6,
    "metadata": {
     "jupyter": {
      "source_hidden": true
     },
     "papermill": {
-     "duration": 0.145465,
-     "end_time": "2020-03-31T08:26:33.663583",
+     "duration": 0.186292,
+     "end_time": "2020-04-01T11:27:10.990161",
      "exception": false,
-     "start_time": "2020-03-31T08:26:33.518118",
+     "start_time": "2020-04-01T11:27:10.803869",
      "status": "completed"
     },
     "tags": []
@@ -152,16 +174,16 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 6,
+   "execution_count": 7,
    "metadata": {
     "jupyter": {
      "source_hidden": true
     },
     "papermill": {
-     "duration": 26.092002,
-     "end_time": "2020-03-31T08:26:59.772491",
+     "duration": 0.897239,
+     "end_time": "2020-04-01T11:27:11.906280",
      "exception": false,
-     "start_time": "2020-03-31T08:26:33.680489",
+     "start_time": "2020-04-01T11:27:11.009041",
      "status": "completed"
     },
     "tags": []
@@ -169,73 +191,24 @@
    "outputs": [],
    "source": [
     "# read in population data\n",
-    "df_pop = pd.read_excel(\n",
-    "    Path(data_path) / '../ch-population-statistics/ch-population-by-age-canton.xls', \n",
-    "    header=1, \n",
-    "    skipfooter=5\n",
-    ")\n",
-    "df_pop = df_pop.where(\n",
-    "    df_pop.Region.str.startswith('-')\n",
-    ").dropna().sort_values('Region').reset_index(drop=True)\n",
+    "from covid_19_dashboard import helper, plotting\n",
     "\n",
-    "# match the cantons in the two datasets\n",
-    "df_pop['abbreviation_canton_and_fl'] = ['AG', 'AI', 'AR', 'BL', 'BS', 'BE', 'FR', 'GE', 'GL', 'GR', 'JU', 'LU', 'NE', 'NW', 'OW', 'SH', 'SZ', 'SO', 'SG', 'TG', 'TI', 'UR', 'VS', 'VD', 'ZG', 'ZH']\n",
-    "\n",
-    "pop_d = df_pop[['abbreviation_canton_and_fl', 'Total']].set_index('abbreviation_canton_and_fl').to_dict()\n",
-    "\n",
-    "\n",
-    "# calculate cases and deaths per 10k\n",
+    "population = {key[3:]: value for (key,value) in helper.get_region_populations('CHE').items()}\n",
     "\n",
     "for x in ['conf', 'deceased']:\n",
-    "    df[f'ncumul_{x}_10k'] = df.apply(\n",
-    "        lambda row: row[f'ncumul_{x}']/pop_d['Total'][row.abbreviation_canton_and_fl]*10000, axis=1\n",
+    "    df[f'ncumul_{x}_100k'] = df.apply(\n",
+    "        lambda row: row[f'ncumul_{x}']/population[row.abbreviation_canton_and_fl]*100000, axis=1\n",
     "    )"
    ]
   },
-  {
-   "cell_type": "code",
-   "execution_count": 7,
-   "metadata": {
-    "jupyter": {
-     "source_hidden": true
-    },
-    "papermill": {
-     "duration": 0.027996,
-     "end_time": "2020-03-31T08:26:59.817091",
-     "exception": false,
-     "start_time": "2020-03-31T08:26:59.789095",
-     "status": "completed"
-    },
-    "tags": []
-   },
-   "outputs": [],
-   "source": [
-    "def generate_canton_chart(column, title, tooltip_title):\n",
-    "    \"\"\"Produce a canton chart given a column name\"\"\"\n",
-    "    selection = alt.selection_multi(fields=['abbreviation_canton_and_fl'], bind='legend')\n",
-    "    chart = base.mark_line().encode(\n",
-    "        alt.X('date', title='Date'), \n",
-    "        alt.Y(column, \n",
-    "              title=title, scale=alt.Scale(type='linear')),\n",
-    "        color=alt.Color('abbreviation_canton_and_fl', legend=alt.Legend(title=\"Canton\")),\n",
-    "        tooltip=[alt.Tooltip('abbreviation_canton_and_fl',title='Canton'),\n",
-    "                 alt.Tooltip(column,title=tooltip_title),\n",
-    "                 alt.Tooltip('date',title='Date')],\n",
-    "        opacity=alt.condition(selection, alt.value(1), alt.value(0.2))\n",
-    "    ).add_selection(\n",
-    "        selection\n",
-    "    )\n",
-    "    return chart"
-   ]
-  },
   {
    "cell_type": "markdown",
    "metadata": {
     "papermill": {
-     "duration": 0.00833,
-     "end_time": "2020-03-31T08:26:59.835242",
+     "duration": 0.009951,
+     "end_time": "2020-04-01T11:27:11.935995",
      "exception": false,
-     "start_time": "2020-03-31T08:26:59.826912",
+     "start_time": "2020-04-01T11:27:11.926044",
      "status": "completed"
     },
     "tags": []
@@ -252,10 +225,10 @@
      "source_hidden": true
     },
     "papermill": {
-     "duration": 0.179079,
-     "end_time": "2020-03-31T08:27:00.021034",
+     "duration": 0.234802,
+     "end_time": "2020-04-01T11:27:12.177429",
      "exception": false,
-     "start_time": "2020-03-31T08:26:59.841955",
+     "start_time": "2020-04-01T11:27:11.942627",
      "status": "completed"
     },
     "tags": []
@@ -265,10 +238,10 @@
      "data": {
       "text/html": [
        "\n",
-       "<div id=\"altair-viz-636be5c144444e66a6348fa291689d60\"></div>\n",
+       "<div id=\"altair-viz-da5ac38fcbd340beb739fbae506e9824\"></div>\n",
        "<script type=\"text/javascript\">\n",
        "  (function(spec, embedOpt){\n",
-       "    const outputDiv = document.getElementById(\"altair-viz-636be5c144444e66a6348fa291689d60\");\n",
+       "    const outputDiv = document.getElementById(\"altair-viz-da5ac38fcbd340beb739fbae506e9824\");\n",
        "    const paths = {\n",
        "      \"vega\": \"https://cdn.jsdelivr.net/npm//vega@5?noext\",\n",
        "      \"vega-lib\": \"https://cdn.jsdelivr.net/npm//vega-lib?noext\",\n",
@@ -309,7 +282,7 @@
        "        .catch(showError)\n",
        "        .then(() => displayChart(vegaEmbed));\n",
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\"https://www.vs.ch/de/web/coronavirus/info?p_p_id=com_liferay_asset_publisher_web_portlet_AssetPublisherPortlet_INSTANCE_1rjMHS5sCcaN&p_p_lifecycle=0&p_p_state=normal&p_p_mode=view&_com_liferay_asset_publisher_web_portlet_AssetPublisherPortlet_INSTANCE_1rjMHS5sCcaN_delta=5&p_r_p_resetCur=false&_com_liferay_asset_publisher_web_portlet_AssetPublisherPortlet_INSTANCE_1rjMHS5sCcaN_cur=3#collapse6870561\", \"ncumul_ICF\": null, \"ninst_ICU_intub\": null, \"ncumul_deceased_suspect\": null, \"TotalPosTests1\": null, \"TotalCured\": null, \"ncumul_conf_10k\": 0.6396185547528019, \"ncumul_deceased_10k\": null}, {\"date\": \"2020-03-12T00:00:00\", \"time\": null, \"abbreviation_canton_and_fl\": \"VS\", \"ncumul_tested\": null, \"ncumul_conf\": 30.0, \"ncumul_hosp\": 12.0, \"ncumul_ICU\": 1.0, \"ncumul_vent\": 1.0, \"ncumul_released\": null, \"ncumul_deceased\": null, \"source\": \"https://www.vs.ch/documents/6756452/7008787/Sit%20Epid%20-%20%C3%89tat%20Stand%2025.03.2020.pdf\", \"ncumul_ICF\": null, \"ninst_ICU_intub\": null, \"ncumul_deceased_suspect\": null, \"TotalPosTests1\": null, \"TotalCured\": null, \"ncumul_conf_10k\": 0.8722071201174573, \"ncumul_deceased_10k\": null}, {\"date\": \"2020-03-13T00:00:00\", \"time\": null, \"abbreviation_canton_and_fl\": \"VS\", \"ncumul_tested\": null, \"ncumul_conf\": 53.0, \"ncumul_hosp\": 17.0, \"ncumul_ICU\": 1.0, \"ncumul_vent\": 1.0, \"ncumul_released\": null, \"ncumul_deceased\": null, \"source\": \"https://www.vs.ch/de/web/coronavirus/info?p_p_id=com_liferay_asset_publisher_web_portlet_AssetPublisherPortlet_INSTANCE_1rjMHS5sCcaN&p_p_lifecycle=0&p_p_state=normal&p_p_mode=view&_com_liferay_asset_publisher_web_portlet_AssetPublisherPortlet_INSTANCE_1rjMHS5sCcaN_delta=5&p_r_p_resetCur=false&_com_liferay_asset_publisher_web_portlet_AssetPublisherPortlet_INSTANCE_1rjMHS5sCcaN_cur=3#collapse6898881\", \"ncumul_ICF\": null, \"ninst_ICU_intub\": null, \"ncumul_deceased_suspect\": null, \"TotalPosTests1\": null, \"TotalCured\": null, 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\"abbreviation_canton_and_fl\": \"SH\", \"ncumul_tested\": null, \"ncumul_conf\": 41.0, \"ncumul_hosp\": null, \"ncumul_ICU\": null, \"ncumul_vent\": null, \"ncumul_released\": null, \"ncumul_deceased\": null, \"source\": \"https://sh.ch/CMS/Webseite/Kanton-Schaffhausen/Beh-rde/Verwaltung/Departement-des-Innern/Gesundheitsamt-3209198-DE.html\", \"ncumul_ICF\": null, \"ninst_ICU_intub\": null, \"ncumul_deceased_suspect\": null, \"TotalPosTests1\": null, \"TotalCured\": null, \"ncumul_conf_100k\": 50.00548840726421, \"ncumul_deceased_100k\": null}, {\"date\": \"2020-03-31T00:00:00\", \"time\": \"07:30\", \"abbreviation_canton_and_fl\": \"SH\", \"ncumul_tested\": null, \"ncumul_conf\": 42.0, \"ncumul_hosp\": null, \"ncumul_ICU\": null, \"ncumul_vent\": null, \"ncumul_released\": null, \"ncumul_deceased\": null, \"source\": \"https://sh.ch/CMS/Webseite/Kanton-Schaffhausen/Beh-rde/Verwaltung/Departement-des-Innern/Gesundheitsamt-3209198-DE.html\", \"ncumul_ICF\": null, \"ninst_ICU_intub\": null, \"ncumul_deceased_suspect\": null, \"TotalPosTests1\": null, \"TotalCured\": null, \"ncumul_conf_100k\": 51.225134465977966, \"ncumul_deceased_100k\": null}, {\"date\": \"2020-04-01T00:00:00\", \"time\": \"07:00\", \"abbreviation_canton_and_fl\": \"SH\", \"ncumul_tested\": null, \"ncumul_conf\": 44.0, \"ncumul_hosp\": null, \"ncumul_ICU\": null, \"ncumul_vent\": null, \"ncumul_released\": null, \"ncumul_deceased\": null, \"source\": \"https://sh.ch/CMS/Webseite/Kanton-Schaffhausen/Beh-rde/Verwaltung/Departement-des-Innern/Gesundheitsamt-3209198-DE.html\", \"ncumul_ICF\": null, \"ninst_ICU_intub\": null, \"ncumul_deceased_suspect\": null, \"TotalPosTests1\": null, \"TotalCured\": null, \"ncumul_conf_100k\": 53.66442658340549, \"ncumul_deceased_100k\": null}, {\"date\": \"2020-03-05T00:00:00\", \"time\": null, \"abbreviation_canton_and_fl\": \"AR\", \"ncumul_tested\": null, \"ncumul_conf\": 1.0, \"ncumul_hosp\": null, \"ncumul_ICU\": null, \"ncumul_vent\": null, \"ncumul_released\": null, \"ncumul_deceased\": null, \"source\": \"https://www.ar.ch/verwaltung/departement-gesundheit-und-soziales/news-aus-dem-departement/detail/news/coronavirusersterfallinappenzellausserrhoden/?tx_news_pi1[controller]=News&tx_news_pi1[action]=detail&cHash=fb1a9cf08108cdc7b82780b9239b009d\", \"ncumul_ICF\": null, \"ninst_ICU_intub\": null, \"ncumul_deceased_suspect\": null, \"TotalPosTests1\": null, \"TotalCured\": null, \"ncumul_conf_100k\": 1.8104790527573595, \"ncumul_deceased_100k\": null}, {\"date\": \"2020-03-09T00:00:00\", \"time\": null, \"abbreviation_canton_and_fl\": \"AR\", \"ncumul_tested\": null, \"ncumul_conf\": 2.0, \"ncumul_hosp\": null, \"ncumul_ICU\": null, \"ncumul_vent\": null, \"ncumul_released\": null, \"ncumul_deceased\": null, \"source\": \"https://www.ar.ch/schnellzugriff/medienmitteilungen-der-kantonalen-verwaltung/detail/news/zweiter-coronafall-in-appenzell-ausserrhoden/?tx_news_pi1[controller]=News&tx_news_pi1[action]=detail&cHash=de7ec38198b5e60b6dce8fccc7735501\", \"ncumul_ICF\": null, \"ninst_ICU_intub\": null, \"ncumul_deceased_suspect\": null, \"TotalPosTests1\": null, \"TotalCured\": null, \"ncumul_conf_100k\": 3.620958105514719, \"ncumul_deceased_100k\": null}, {\"date\": \"2020-03-12T00:00:00\", \"time\": null, \"abbreviation_canton_and_fl\": \"AR\", \"ncumul_tested\": null, \"ncumul_conf\": 5.0, \"ncumul_hosp\": null, \"ncumul_ICU\": null, \"ncumul_vent\": null, \"ncumul_released\": null, \"ncumul_deceased\": null, \"source\": \"https://www.ar.ch/schnellzugriff/medienmitteilungen-der-kantonalen-verwaltung/detail/news/coronavirus-drei-neue-faelle-in-appenzell-ausserrhoden/?tx_news_pi1[controller]=News&tx_news_pi1[action]=detail&cHash=272411484066c8fb971dcc838aa96ef9\", \"ncumul_ICF\": null, 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        "</script>"
       ],
       "text/plain": [
@@ -340,15 +313,28 @@
     }
    ],
    "source": [
-    "base = alt.Chart(df.where(df.ncumul_conf>0).dropna(subset=['abbreviation_canton_and_fl']))\n",
+    "base = alt.Chart(df)\n",
     "base.configure_header(titleFontSize=25)\n",
     "base.configure_axis(labelFontSize=15, titleFontSize=15)\n",
     "\n",
-    "cumul = generate_canton_chart('ncumul_conf', 'Cases', 'Cases')\n",
-    "cumul_10k = generate_canton_chart('ncumul_conf_10k', 'Cases per 10k population', 'Cases/10k')\n",
+    "# cumul = generate_canton_chart(base, 'ncumul_conf', 'Cases', 'Cases')\n",
+    "cumul = plotting.generate_region_chart(\n",
+    "    base, \n",
+    "    column='ncumul_conf', \n",
+    "    region_column='abbreviation_canton_and_fl',\n",
+    "    ytitle='Cases', \n",
+    "    legend_title='Canton',\n",
+    "    tooltip_title='Cases')\n",
+    "cumul_100k = plotting.generate_region_chart(\n",
+    "    base, \n",
+    "    column='ncumul_conf_100k', \n",
+    "    region_column='abbreviation_canton_and_fl',\n",
+    "    ytitle='Cases per 100k population', \n",
+    "    legend_title='Canton',\n",
+    "    tooltip_title='Cases/100k')\n",
     "\n",
     "chart = alt.hconcat(\n",
-    "    cumul, cumul_10k, title='Covid-19 cases in Switzerland by Canton'\n",
+    "    cumul, cumul_100k, title='Covid-19 cases in Switzerland by Canton'\n",
     ").configure_title(\n",
     "    anchor='middle'\n",
     ")\n",
@@ -364,10 +350,10 @@
    "cell_type": "markdown",
    "metadata": {
     "papermill": {
-     "duration": 0.013947,
-     "end_time": "2020-03-31T08:27:00.051769",
+     "duration": 0.028901,
+     "end_time": "2020-04-01T11:27:12.230919",
      "exception": false,
-     "start_time": "2020-03-31T08:27:00.037822",
+     "start_time": "2020-04-01T11:27:12.202018",
      "status": "completed"
     },
     "tags": []
@@ -384,10 +370,10 @@
      "source_hidden": true
     },
     "papermill": {
-     "duration": 0.165613,
-     "end_time": "2020-03-31T08:27:00.230902",
+     "duration": 0.15076,
+     "end_time": "2020-04-01T11:27:12.407644",
      "exception": false,
-     "start_time": "2020-03-31T08:27:00.065289",
+     "start_time": "2020-04-01T11:27:12.256884",
      "status": "completed"
     },
     "tags": []
@@ -397,10 +383,10 @@
      "data": {
       "text/html": [
        "\n",
-       "<div id=\"altair-viz-33ca6b1ef66245418df7543b5ec68554\"></div>\n",
+       "<div id=\"altair-viz-ad1b4570ab1942919cc445133f0e224d\"></div>\n",
        "<script type=\"text/javascript\">\n",
        "  (function(spec, embedOpt){\n",
-       "    const outputDiv = document.getElementById(\"altair-viz-33ca6b1ef66245418df7543b5ec68554\");\n",
+       "    const outputDiv = document.getElementById(\"altair-viz-ad1b4570ab1942919cc445133f0e224d\");\n",
        "    const paths = {\n",
        "      \"vega\": \"https://cdn.jsdelivr.net/npm//vega@5?noext\",\n",
        "      \"vega-lib\": \"https://cdn.jsdelivr.net/npm//vega-lib?noext\",\n",
@@ -441,7 +427,7 @@
        "        .catch(showError)\n",
        "        .then(() => displayChart(vegaEmbed));\n",
        "    }\n",
-       "  })({\"config\": {\"view\": {\"continuousWidth\": 400, \"continuousHeight\": 300}, \"title\": {\"anchor\": \"middle\"}}, \"hconcat\": [{\"mark\": \"line\", \"encoding\": {\"color\": {\"type\": \"nominal\", \"field\": \"abbreviation_canton_and_fl\", \"legend\": {\"title\": \"Canton\"}}, \"opacity\": {\"condition\": {\"value\": 1, \"selection\": \"selector003\"}, \"value\": 0.2}, \"tooltip\": [{\"type\": \"nominal\", \"field\": \"abbreviation_canton_and_fl\", \"title\": \"Canton\"}, {\"type\": \"quantitative\", \"field\": \"ncumul_deceased\", \"title\": \"Deaths\"}, {\"type\": \"temporal\", \"field\": \"date\", \"title\": \"Date\"}], \"x\": {\"type\": \"temporal\", \"field\": \"date\", \"title\": \"Date\"}, \"y\": {\"type\": \"quantitative\", \"field\": \"ncumul_deceased\", \"scale\": {\"type\": \"linear\"}, \"title\": \"Deaths\"}}, \"selection\": {\"selector003\": {\"type\": \"multi\", \"fields\": [\"abbreviation_canton_and_fl\"], \"bind\": \"legend\"}}}, {\"mark\": \"line\", 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\"abbreviation_canton_and_fl\": \"SH\", \"ncumul_tested\": null, \"ncumul_conf\": 41.0, \"ncumul_hosp\": null, \"ncumul_ICU\": null, \"ncumul_vent\": null, \"ncumul_released\": null, \"ncumul_deceased\": null, \"source\": \"https://sh.ch/CMS/Webseite/Kanton-Schaffhausen/Beh-rde/Verwaltung/Departement-des-Innern/Gesundheitsamt-3209198-DE.html\", \"ncumul_ICF\": null, \"ninst_ICU_intub\": null, \"ncumul_deceased_suspect\": null, \"TotalPosTests1\": null, \"TotalCured\": null, \"ncumul_conf_100k\": 50.00548840726421, \"ncumul_deceased_100k\": null}, {\"date\": \"2020-03-31T00:00:00\", \"time\": \"07:30\", \"abbreviation_canton_and_fl\": \"SH\", \"ncumul_tested\": null, \"ncumul_conf\": 42.0, \"ncumul_hosp\": null, \"ncumul_ICU\": null, \"ncumul_vent\": null, \"ncumul_released\": null, \"ncumul_deceased\": null, \"source\": \"https://sh.ch/CMS/Webseite/Kanton-Schaffhausen/Beh-rde/Verwaltung/Departement-des-Innern/Gesundheitsamt-3209198-DE.html\", \"ncumul_ICF\": null, \"ninst_ICU_intub\": 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        "</script>"
       ],
       "text/plain": [
@@ -472,12 +458,26 @@
     }
    ],
    "source": [
-    "base = alt.Chart(df.where(df.ncumul_deceased>0).dropna(subset=['abbreviation_canton_and_fl']))\n",
+    "base = alt.Chart(df)\n",
     "base.configure_header(titleFontSize=25)\n",
     "base.configure_axis(labelFontSize=15, titleFontSize=15)\n",
     "\n",
-    "deaths = generate_canton_chart('ncumul_deceased', 'Deaths', 'Deaths')\n",
-    "deaths_10k = generate_canton_chart('ncumul_deceased_10k', 'Deaths per 10k population', 'Deaths/10k')\n",
+    "deaths = plotting.generate_region_chart(\n",
+    "    base, \n",
+    "    column='ncumul_deceased', \n",
+    "    region_column='abbreviation_canton_and_fl',\n",
+    "    ytitle='Deaths', \n",
+    "    tooltip_title='Deaths',\n",
+    "    legend_title='Canton'\n",
+    ")\n",
+    "deaths_10k = plotting.generate_region_chart(\n",
+    "    base, \n",
+    "    column='ncumul_deceased_100k', \n",
+    "    region_column='abbreviation_canton_and_fl',\n",
+    "    ytitle='Deaths per 100k population', \n",
+    "    tooltip_title='Deaths/100k',\n",
+    "    legend_title='Canton'\n",
+    ")\n",
     "\n",
     "chart = alt.hconcat(\n",
     "    deaths, deaths_10k, title='Covid-19 deaths in Switzerland by Canton'\n",
@@ -490,6 +490,107 @@
     "if save_figures:\n",
     "    chart.save(str(Path(figures_path) / 'switzerland-deaths-by-canton.html'))\n"
    ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 10,
+   "metadata": {
+    "jupyter": {
+     "source_hidden": true
+    },
+    "papermill": {
+     "duration": 0.225026,
+     "end_time": "2020-04-01T11:27:12.672199",
+     "exception": false,
+     "start_time": "2020-04-01T11:27:12.447173",
+     "status": "completed"
+    },
+    "tags": []
+   },
+   "outputs": [
+    {
+     "data": {
+      "text/html": [
+       "\n",
+       "<div id=\"altair-viz-81becc34939d4d9f9c03ca963e31b278\"></div>\n",
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+       "      outputDiv.innerHTML = `<div class=\"error\" style=\"color:red;\">${err}</div>`;\n",
+       "      throw err;\n",
+       "    }\n",
+       "\n",
+       "    function displayChart(vegaEmbed) {\n",
+       "      vegaEmbed(outputDiv, spec, embedOpt)\n",
+       "        .catch(err => showError(`Javascript Error: ${err.message}<br>This usually means there's a typo in your chart specification. See the javascript console for the full traceback.`));\n",
+       "    }\n",
+       "\n",
+       "    if(typeof define === \"function\" && define.amd) {\n",
+       "      requirejs.config({paths});\n",
+       "      require([\"vega-embed\"], displayChart, err => showError(`Error loading script: ${err.message}`));\n",
+       "    } else if (typeof vegaEmbed === \"function\") {\n",
+       "      displayChart(vegaEmbed);\n",
+       "    } else {\n",
+       "      loadScript(\"vega\")\n",
+       "        .then(() => loadScript(\"vega-lite\"))\n",
+       "        .then(() => loadScript(\"vega-embed\"))\n",
+       "        .catch(showError)\n",
+       "        .then(() => displayChart(vegaEmbed));\n",
+       "    }\n",
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week\"}, {\"index\": 15, \"day\": 15, \"case\": 441.6358054695249, \"doubling period\": \"every week\"}, {\"index\": 16, \"day\": 16, \"case\": 487.60546168179013, \"doubling period\": \"every week\"}, {\"index\": 17, \"day\": 17, \"case\": 538.3600770529424, \"doubling period\": \"every week\"}, {\"index\": 18, \"day\": 18, \"case\": 594.3977156547794, \"doubling period\": \"every week\"}, {\"index\": 19, \"day\": 19, \"case\": 656.2682848061104, \"doubling period\": \"every week\"}, {\"index\": 20, \"day\": 20, \"case\": 724.5789314111254, \"doubling period\": \"every week\"}], \"data-b70c94248cc0893065487186c71e4541\": [{\"labelX\": 9, \"labelY\": 5000, \"labelText\": \"doubles every day\"}, {\"labelX\": 19, \"labelY\": 8000, \"labelText\": \"doubles every 3 days\"}, {\"labelX\": 20, \"labelY\": 300, \"labelText\": \"doubles every week\"}]}}, {\"mode\": \"vega-lite\"});\n",
+       "</script>"
+      ],
+      "text/plain": [
+       "alt.LayerChart(...)"
+      ]
+     },
+     "execution_count": 10,
+     "metadata": {},
+     "output_type": "execute_result"
+    }
+   ],
+   "source": [
+    "since_100th_case = helper.make_since_df(df, 'ncumul_conf', 'abbreviation_canton_and_fl')\n",
+    "\n",
+    "base = alt.Chart(since_100th_case, title=\"Switzerland: total cases since 100th case\").encode(alt.Y(scale=alt.Scale(type='log')))\n",
+    "\n",
+    "lineChart = plotting.make_region_since_chart(\n",
+    "    base, \n",
+    "    'ncumul_conf', \n",
+    "    'sinceDay0', \n",
+    "    'abbreviation_canton_and_fl', \n",
+    "    'Days since 100th case',\n",
+    "    'Cumulative positive cases',\n",
+    "    'Cases',\n",
+    "    'Canton'\n",
+    ").properties(\n",
+    "    width=450,\n",
+    "    height=450\n",
+    ")\n",
+    "\n",
+    "rule_chart = plotting.make_rule_chart(max_days=20, pos_day=(9,5000), pos_3days=(19,8000))\n",
+    "\n",
+    "lineChart + rule_chart"
+   ]
   }
  ],
  "metadata": {
@@ -512,16 +613,16 @@
    "version": "3.7.3"
   },
   "papermill": {
-   "duration": 28.602829,
-   "end_time": "2020-03-31T08:27:00.710196",
+   "duration": 3.813989,
+   "end_time": "2020-04-01T11:27:13.029034",
    "environment_variables": {},
    "exception": null,
-   "input_path": "/tmp/8s_42_7t/notebooks/openzh-covid-19-dashboard.ipynb",
+   "input_path": "/tmp/ec1jm71t/notebooks/openzh-covid-19-dashboard.ipynb",
    "output_path": "runs/openzh-covid-19-dashboard.run.ipynb",
    "parameters": {
-    "data_path": "/tmp/8s_42_7t/data/openzh-covid-19"
+    "data_path": "/tmp/ec1jm71t/data/openzh-covid-19"
    },
-   "start_time": "2020-03-31T08:26:32.107367",
+   "start_time": "2020-04-01T11:27:09.215045",
    "version": "1.1.0"
   }
  },
-- 
GitLab