From df4e58a9b9e0cffcec295b549c952cf941c2dcaa Mon Sep 17 00:00:00 2001
From: Rok Roskar <rokroskar@gmail.com>
Date: Wed, 18 Mar 2020 17:21:45 +0100
Subject: [PATCH] add example notebook for open data ch
---
notebooks/openzh-covid-19-example.ipynb | 421 ++++++++++++++++++++++++
1 file changed, 421 insertions(+)
create mode 100644 notebooks/openzh-covid-19-example.ipynb
diff --git a/notebooks/openzh-covid-19-example.ipynb b/notebooks/openzh-covid-19-example.ipynb
new file mode 100644
index 00000000..f45859e2
--- /dev/null
+++ b/notebooks/openzh-covid-19-example.ipynb
@@ -0,0 +1,421 @@
+{
+ "cells": [
+ {
+ "cell_type": "code",
+ "execution_count": 1,
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "from pathlib import Path\n",
+ "\n",
+ "import altair as alt\n",
+ "import pandas as pd"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "## Read in the data"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 2,
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "# read in cantonal data and produce one dataframe\n",
+ "df_list = []\n",
+ "\n",
+ "for f in Path('../data/openzh-covid-19/').glob('COVID19_Fallzahlen_Kanton_*total.csv'):\n",
+ " df_list.append(pd.read_csv(f))\n",
+ "\n",
+ "df = pd.concat(df_list)\n",
+ "\n",
+ "df['Date'] = pd.to_datetime(df['Date'], dayfirst=True)"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 3,
+ "metadata": {},
+ "outputs": [
+ {
+ "data": {
+ "text/html": [
+ "<div>\n",
+ "<style scoped>\n",
+ " .dataframe tbody tr th:only-of-type {\n",
+ " vertical-align: middle;\n",
+ " }\n",
+ "\n",
+ " .dataframe tbody tr th {\n",
+ " vertical-align: top;\n",
+ " }\n",
+ "\n",
+ " .dataframe thead th {\n",
+ " text-align: right;\n",
+ " }\n",
+ "</style>\n",
+ "<table border=\"1\" class=\"dataframe\">\n",
+ " <thead>\n",
+ " <tr style=\"text-align: right;\">\n",
+ " <th></th>\n",
+ " <th>Date</th>\n",
+ " <th>Area</th>\n",
+ " <th>TotalTestedCases</th>\n",
+ " <th>TotalConfCases</th>\n",
+ " <th>TotalPosTests1</th>\n",
+ " <th>TotalCured</th>\n",
+ " <th>TotalDeaths</th>\n",
+ " <th>TotalHospitalized</th>\n",
+ " <th>Source</th>\n",
+ " <th>Source2</th>\n",
+ " <th>Source3</th>\n",
+ " <th>Unnamed: 11</th>\n",
+ " </tr>\n",
+ " </thead>\n",
+ " <tbody>\n",
+ " <tr>\n",
+ " <th>0</th>\n",
+ " <td>2020-03-16</td>\n",
+ " <td>Canton_BE</td>\n",
+ " <td>NaN</td>\n",
+ " <td>123</td>\n",
+ " <td>131.0</td>\n",
+ " <td>NaN</td>\n",
+ " <td>1.0</td>\n",
+ " <td>NaN</td>\n",
+ " <td>NaN</td>\n",
+ " <td>NaN</td>\n",
+ " <td>NaN</td>\n",
+ " <td>NaN</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>1</th>\n",
+ " <td>2020-03-18</td>\n",
+ " <td>Canton_BE</td>\n",
+ " <td>NaN</td>\n",
+ " <td>193</td>\n",
+ " <td>NaN</td>\n",
+ " <td>NaN</td>\n",
+ " <td>1.0</td>\n",
+ " <td>NaN</td>\n",
+ " <td>NaN</td>\n",
+ " <td>NaN</td>\n",
+ " <td>NaN</td>\n",
+ " <td>NaN</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>0</th>\n",
+ " <td>2020-02-27</td>\n",
+ " <td>Canton_BS</td>\n",
+ " <td>NaN</td>\n",
+ " <td>0</td>\n",
+ " <td>1.0</td>\n",
+ " <td>NaN</td>\n",
+ " <td>NaN</td>\n",
+ " <td>NaN</td>\n",
+ " <td>https://www.coronavirus.bs.ch/nm/2020-coronavi...</td>\n",
+ " <td>NaN</td>\n",
+ " <td>NaN</td>\n",
+ " <td>NaN</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>1</th>\n",
+ " <td>2020-02-28</td>\n",
+ " <td>Canton_BS</td>\n",
+ " <td>NaN</td>\n",
+ " <td>0</td>\n",
+ " <td>1.0</td>\n",
+ " <td>NaN</td>\n",
+ " <td>NaN</td>\n",
+ " <td>NaN</td>\n",
+ " <td>https://twitter.com/BR_Sprecher/status/1233316...</td>\n",
+ " <td>NaN</td>\n",
+ " <td>NaN</td>\n",
+ " <td>NaN</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>2</th>\n",
+ " <td>2020-02-29</td>\n",
+ " <td>Canton_BS</td>\n",
+ " <td>NaN</td>\n",
+ " <td>0</td>\n",
+ " <td>1.0</td>\n",
+ " <td>NaN</td>\n",
+ " <td>NaN</td>\n",
+ " <td>NaN</td>\n",
+ " <td>https://twitter.com/BAG_OFSP_UFSP/status/12337...</td>\n",
+ " <td>NaN</td>\n",
+ " <td>NaN</td>\n",
+ " <td>NaN</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>...</th>\n",
+ " <td>...</td>\n",
+ " <td>...</td>\n",
+ " <td>...</td>\n",
+ " <td>...</td>\n",
+ " <td>...</td>\n",
+ " <td>...</td>\n",
+ " <td>...</td>\n",
+ " <td>...</td>\n",
+ " <td>...</td>\n",
+ " <td>...</td>\n",
+ " <td>...</td>\n",
+ " <td>...</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>15</th>\n",
+ " <td>2020-03-14</td>\n",
+ " <td>Canton_BL</td>\n",
+ " <td>NaN</td>\n",
+ " <td>47</td>\n",
+ " <td>NaN</td>\n",
+ " <td>NaN</td>\n",
+ " <td>2.0</td>\n",
+ " <td>NaN</td>\n",
+ " <td>https://www.baselland.ch/politik-und-behorden/...</td>\n",
+ " <td>NaN</td>\n",
+ " <td>NaN</td>\n",
+ " <td>NaN</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>16</th>\n",
+ " <td>2020-03-15</td>\n",
+ " <td>Canton_BL</td>\n",
+ " <td>NaN</td>\n",
+ " <td>54</td>\n",
+ " <td>NaN</td>\n",
+ " <td>NaN</td>\n",
+ " <td>2.0</td>\n",
+ " <td>NaN</td>\n",
+ " <td>https://www.baselland.ch/politik-und-behorden/...</td>\n",
+ " <td>NaN</td>\n",
+ " <td>NaN</td>\n",
+ " <td>NaN</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>17</th>\n",
+ " <td>2020-03-16</td>\n",
+ " <td>Canton_BL</td>\n",
+ " <td>NaN</td>\n",
+ " <td>76</td>\n",
+ " <td>NaN</td>\n",
+ " <td>NaN</td>\n",
+ " <td>2.0</td>\n",
+ " <td>NaN</td>\n",
+ " <td>https://www.baselland.ch/politik-und-behorden/...</td>\n",
+ " <td>NaN</td>\n",
+ " <td>NaN</td>\n",
+ " <td>NaN</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>18</th>\n",
+ " <td>2020-03-17</td>\n",
+ " <td>Canton_BL</td>\n",
+ " <td>NaN</td>\n",
+ " <td>89</td>\n",
+ " <td>NaN</td>\n",
+ " <td>NaN</td>\n",
+ " <td>2.0</td>\n",
+ " <td>NaN</td>\n",
+ " <td>https://www.baselland.ch/politik-und-behorden/...</td>\n",
+ " <td>NaN</td>\n",
+ " <td>NaN</td>\n",
+ " <td>NaN</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>19</th>\n",
+ " <td>2020-03-18</td>\n",
+ " <td>Canton_BL</td>\n",
+ " <td>NaN</td>\n",
+ " <td>116</td>\n",
+ " <td>NaN</td>\n",
+ " <td>NaN</td>\n",
+ " <td>2.0</td>\n",
+ " <td>NaN</td>\n",
+ " <td>https://www.baselland.ch/politik-und-behorden/...</td>\n",
+ " <td>NaN</td>\n",
+ " <td>NaN</td>\n",
+ " <td>NaN</td>\n",
+ " </tr>\n",
+ " </tbody>\n",
+ "</table>\n",
+ "<p>61 rows × 12 columns</p>\n",
+ "</div>"
+ ],
+ "text/plain": [
+ " Date Area TotalTestedCases TotalConfCases TotalPosTests1 \\\n",
+ "0 2020-03-16 Canton_BE NaN 123 131.0 \n",
+ "1 2020-03-18 Canton_BE NaN 193 NaN \n",
+ "0 2020-02-27 Canton_BS NaN 0 1.0 \n",
+ "1 2020-02-28 Canton_BS NaN 0 1.0 \n",
+ "2 2020-02-29 Canton_BS NaN 0 1.0 \n",
+ ".. ... ... ... ... ... \n",
+ "15 2020-03-14 Canton_BL NaN 47 NaN \n",
+ "16 2020-03-15 Canton_BL NaN 54 NaN \n",
+ "17 2020-03-16 Canton_BL NaN 76 NaN \n",
+ "18 2020-03-17 Canton_BL NaN 89 NaN \n",
+ "19 2020-03-18 Canton_BL NaN 116 NaN \n",
+ "\n",
+ " TotalCured TotalDeaths TotalHospitalized \\\n",
+ "0 NaN 1.0 NaN \n",
+ "1 NaN 1.0 NaN \n",
+ "0 NaN NaN NaN \n",
+ "1 NaN NaN NaN \n",
+ "2 NaN NaN NaN \n",
+ ".. ... ... ... \n",
+ "15 NaN 2.0 NaN \n",
+ "16 NaN 2.0 NaN \n",
+ "17 NaN 2.0 NaN \n",
+ "18 NaN 2.0 NaN \n",
+ "19 NaN 2.0 NaN \n",
+ "\n",
+ " Source Source2 Source3 \\\n",
+ "0 NaN NaN NaN \n",
+ "1 NaN NaN NaN \n",
+ "0 https://www.coronavirus.bs.ch/nm/2020-coronavi... NaN NaN \n",
+ "1 https://twitter.com/BR_Sprecher/status/1233316... NaN NaN \n",
+ "2 https://twitter.com/BAG_OFSP_UFSP/status/12337... NaN NaN \n",
+ ".. ... ... ... \n",
+ "15 https://www.baselland.ch/politik-und-behorden/... NaN NaN \n",
+ "16 https://www.baselland.ch/politik-und-behorden/... NaN NaN \n",
+ "17 https://www.baselland.ch/politik-und-behorden/... NaN NaN \n",
+ "18 https://www.baselland.ch/politik-und-behorden/... NaN NaN \n",
+ "19 https://www.baselland.ch/politik-und-behorden/... NaN NaN \n",
+ "\n",
+ " Unnamed: 11 \n",
+ "0 NaN \n",
+ "1 NaN \n",
+ "0 NaN \n",
+ "1 NaN \n",
+ "2 NaN \n",
+ ".. ... \n",
+ "15 NaN \n",
+ "16 NaN \n",
+ "17 NaN \n",
+ "18 NaN \n",
+ "19 NaN \n",
+ "\n",
+ "[61 rows x 12 columns]"
+ ]
+ },
+ "execution_count": 3,
+ "metadata": {},
+ "output_type": "execute_result"
+ }
+ ],
+ "source": [
+ "# display the dataframe\n",
+ "df"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "## Plot the available data"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 4,
+ "metadata": {},
+ "outputs": [
+ {
+ "data": {
+ "text/html": [
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+ "execution_count": 4,
+ "metadata": {},
+ "output_type": "execute_result"
+ }
+ ],
+ "source": [
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+ ]
+ },
+ {
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+ "execution_count": null,
+ "metadata": {},
+ "outputs": [],
+ "source": []
+ }
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+ "metadata": {
+ "kernelspec": {
+ "display_name": "Python 3",
+ "language": "python",
+ "name": "python3"
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--
GitLab