diff --git a/.renku/workflow/7180e333dbe143b7b2e6124a97e38f5a.cwl b/.renku/workflow/7180e333dbe143b7b2e6124a97e38f5a.cwl
new file mode 100644
index 0000000000000000000000000000000000000000..641e33a7a8c0d2cc42d3ac1287abf6a3be1bd661
--- /dev/null
+++ b/.renku/workflow/7180e333dbe143b7b2e6124a97e38f5a.cwl
@@ -0,0 +1,193 @@
+class: Workflow
+cwlVersion: v1.0
+hints: []
+inputs:
+ input_1:
+ default: ts_folder
+ streamable: false
+ type: string
+ input_10:
+ default:
+ class: Directory
+ listing: []
+ path: ../../data/covid-19_jhu-csse
+ streamable: false
+ type: Directory
+ input_11:
+ default: rates_folder
+ streamable: false
+ type: string
+ input_12:
+ default: geodata_path
+ streamable: false
+ type: string
+ input_13:
+ default:
+ class: File
+ path: ../../data/geodata/geo_data.csv
+ streamable: false
+ type: File
+ input_14:
+ default:
+ class: File
+ path: ../../notebooks/Dashboard.ipynb
+ streamable: false
+ type: File
+ input_15:
+ default: runs/Dashboard.run.ipynb
+ streamable: false
+ type: string
+ input_16:
+ default: ts_folder
+ streamable: false
+ type: string
+ input_17:
+ default: runs/ToRates.run.ipynb
+ streamable: false
+ type: string
+ input_18:
+ default:
+ class: Directory
+ listing: []
+ path: ../../data/covid-19_jhu-csse
+ streamable: false
+ type: Directory
+ input_19:
+ default: wb_path
+ streamable: false
+ type: string
+ input_2:
+ default:
+ class: Directory
+ listing: []
+ path: ../../data/covid-19_jhu-csse
+ streamable: false
+ type: Directory
+ input_20:
+ default:
+ class: File
+ path: ../../data/worldbank/SP.POP.TOTL.zip
+ streamable: false
+ type: File
+ input_21:
+ default: geodata_path
+ streamable: false
+ type: string
+ input_22:
+ default:
+ class: File
+ path: ../../data/geodata/geo_data.csv
+ streamable: false
+ type: File
+ input_23:
+ default: out_folder
+ streamable: false
+ type: string
+ input_24:
+ default: data/covid-19_rates
+ streamable: false
+ type: string
+ input_25:
+ default:
+ class: File
+ path: ../../notebooks/ToRates.ipynb
+ streamable: false
+ type: File
+ input_3:
+ default: worldmap_path
+ streamable: false
+ type: string
+ input_4:
+ default:
+ class: File
+ path: ../../data/worldmap/country_centroids.csv
+ streamable: false
+ type: File
+ input_5:
+ default: out_folder
+ streamable: false
+ type: string
+ input_6:
+ default: data/geodata
+ streamable: false
+ type: string
+ input_7:
+ default:
+ class: File
+ path: ../../notebooks/CompileGeoData.ipynb
+ streamable: false
+ type: File
+ input_8:
+ default: runs/CompileGeoData.run.ipynb
+ streamable: false
+ type: string
+ input_9:
+ default: ts_folder
+ streamable: false
+ type: string
+outputs:
+ output_0:
+ outputSource: step_3/output_0
+ streamable: false
+ type: File
+ output_1:
+ outputSource: step_1/output_0
+ streamable: false
+ type: File
+ output_2:
+ outputSource: step_3/output_1
+ streamable: false
+ type: Directory
+ output_3:
+ outputSource: step_2/output_0
+ streamable: false
+ type: File
+ output_4:
+ outputSource: step_1/output_1
+ streamable: false
+ type: Directory
+requirements: []
+steps:
+ step_1:
+ in:
+ input_1: input_1
+ input_2: input_2
+ input_3: input_3
+ input_4: input_4
+ input_5: input_5
+ input_6: input_6
+ input_7: input_7
+ input_8: input_8
+ out:
+ - output_1
+ - output_0
+ run: 73781f74e51d4e54bc522007a2030ec2_papermill.cwl
+ step_2:
+ in:
+ input_1: input_9
+ input_2: input_10
+ input_3: input_11
+ input_4: step_3/output_1
+ input_5: input_12
+ input_6: input_13
+ input_7: input_14
+ input_8: input_15
+ out:
+ - output_0
+ run: 4cc7ffe9d5a045efb048ef2222a40ffa_papermill.cwl
+ step_3:
+ in:
+ input_1: input_16
+ input_10: input_17
+ input_2: input_18
+ input_3: input_19
+ input_4: input_20
+ input_5: input_21
+ input_6: input_22
+ input_7: input_23
+ input_8: input_24
+ input_9: input_25
+ out:
+ - output_1
+ - output_0
+ run: 2c413376f8aa4ba1a325212655d423e5_papermill.cwl
diff --git a/data/covid-19_rates/ts_rates_19-covid-confirmed.csv b/data/covid-19_rates/ts_rates_19-covid-confirmed.csv
index 5f01693667fc161754ed54d883094fc932676987..56d95691f40181555a034c001a0adad2c3f8ef56 100644
--- a/data/covid-19_rates/ts_rates_19-covid-confirmed.csv
+++ b/data/covid-19_rates/ts_rates_19-covid-confirmed.csv
@@ -1,3 +1,3 @@
version https://git-lfs.github.com/spec/v1
-oid sha256:28a118a3e91b2ae986de30fa0f5710868edafea68c2f4192e4cdb78b5ba191c6
-size 63322
+oid sha256:eaf597680f5c0173a9df77b542cbd0b135b864014570eb8e246f2e227bf17109
+size 69756
diff --git a/data/covid-19_rates/ts_rates_19-covid-deaths.csv b/data/covid-19_rates/ts_rates_19-covid-deaths.csv
index 80e095d639303aa6be852ee37b5d45063db897d3..1be0fd31e025fd8f0e8f3381daf91e9f37968c53 100644
--- a/data/covid-19_rates/ts_rates_19-covid-deaths.csv
+++ b/data/covid-19_rates/ts_rates_19-covid-deaths.csv
@@ -1,3 +1,3 @@
version https://git-lfs.github.com/spec/v1
-oid sha256:0ca853e24dadb8159536248c56d5a2fa03f61c189c90baaf8b981a140941e58a
-size 33935
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+size 39014
diff --git a/data/covid-19_rates/ts_rates_19-covid-recovered.csv b/data/covid-19_rates/ts_rates_19-covid-recovered.csv
index e972ff4ba6aed7e2929ff3846c36346235f5c715..eb1ebf6c65fa37419575944edafb1ec0c4cfa83e 100644
--- a/data/covid-19_rates/ts_rates_19-covid-recovered.csv
+++ b/data/covid-19_rates/ts_rates_19-covid-recovered.csv
@@ -1,3 +1,3 @@
version https://git-lfs.github.com/spec/v1
-oid sha256:fe8e68a3ee46a5fb56080256c63795a686d06d731222fa07d54a3250df812f9e
-size 44554
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+size 49919
diff --git a/data/geodata/geo_data.csv b/data/geodata/geo_data.csv
new file mode 100644
index 0000000000000000000000000000000000000000..37d63a7880e889979c94bd91b982fa1aae083863
--- /dev/null
+++ b/data/geodata/geo_data.csv
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:10381a7c8b37736eb65cf9c510c8a3fb3cdbd11b3c3c7a53f5a1d5a9e8e5074a
+size 34026
diff --git a/runs/CompileGeoData.run.ipynb b/runs/CompileGeoData.run.ipynb
index 3d7acfa8ffb9d37698835db89eeed812b7744eda..de20d0961e2d07b09a60e8cb3f9b379cd4f8ec35 100644
--- a/runs/CompileGeoData.run.ipynb
+++ b/runs/CompileGeoData.run.ipynb
@@ -4,10 +4,10 @@
"cell_type": "markdown",
"metadata": {
"papermill": {
- "duration": 0.023649,
- "end_time": "2020-03-15T15:40:45.758452",
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+ "end_time": "2020-03-15T16:43:49.005977",
"exception": false,
- "start_time": "2020-03-15T15:40:45.734803",
+ "start_time": "2020-03-15T16:43:48.980314",
"status": "completed"
},
"tags": []
@@ -23,10 +23,10 @@
"execution_count": 1,
"metadata": {
"papermill": {
- "duration": 0.297633,
- "end_time": "2020-03-15T15:40:46.067382",
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"exception": false,
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+ "start_time": "2020-03-15T16:43:49.016416",
"status": "completed"
},
"tags": []
@@ -42,10 +42,10 @@
"execution_count": 2,
"metadata": {
"papermill": {
- "duration": 0.018676,
- "end_time": "2020-03-15T15:40:46.104734",
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"exception": false,
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"status": "completed"
},
"tags": []
@@ -62,10 +62,10 @@
"cell_type": "markdown",
"metadata": {
"papermill": {
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"exception": false,
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"status": "completed"
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"tags": [
@@ -81,10 +81,10 @@
"execution_count": 3,
"metadata": {
"papermill": {
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"exception": false,
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+ "start_time": "2020-03-15T16:43:49.408048",
"status": "completed"
},
"tags": [
@@ -94,11 +94,11 @@
"outputs": [],
"source": [
"# Parameters\n",
- "PAPERMILL_INPUT_PATH = \"notebooks/CompileGeoData.ipynb\"\n",
+ "PAPERMILL_INPUT_PATH = \"/tmp/262jiqqx/notebooks/CompileGeoData.ipynb\"\n",
"PAPERMILL_OUTPUT_PATH = \"runs/CompileGeoData.run.ipynb\"\n",
- "ts_folder = \"./data/covid-19_jhu-csse/\"\n",
- "worldmap_path = \"./data/worldmap/country_centroids.csv\"\n",
- "out_folder = \"./data/geodata/\"\n"
+ "ts_folder = \"/tmp/262jiqqx/data/covid-19_jhu-csse\"\n",
+ "worldmap_path = \"/tmp/262jiqqx/data/worldmap/country_centroids.csv\"\n",
+ "out_folder = \"data/geodata\"\n"
]
},
{
@@ -106,10 +106,10 @@
"execution_count": 4,
"metadata": {
"papermill": {
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"exception": false,
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+ "start_time": "2020-03-15T16:43:49.438075",
"status": "completed"
},
"tags": []
@@ -130,10 +130,10 @@
"execution_count": 5,
"metadata": {
"papermill": {
- "duration": 0.064486,
- "end_time": "2020-03-15T15:40:46.279720",
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"exception": false,
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"status": "completed"
},
"tags": []
@@ -147,10 +147,10 @@
"cell_type": "markdown",
"metadata": {
"papermill": {
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"exception": false,
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"status": "completed"
},
"tags": []
@@ -164,10 +164,10 @@
"execution_count": 6,
"metadata": {
"papermill": {
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- "end_time": "2020-03-15T15:40:46.362544",
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"exception": false,
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+ "start_time": "2020-03-15T16:43:49.551571",
"status": "completed"
},
"tags": []
@@ -184,10 +184,10 @@
"execution_count": 7,
"metadata": {
"papermill": {
- "duration": 0.046373,
- "end_time": "2020-03-15T15:40:46.423601",
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"exception": false,
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"status": "completed"
},
"tags": []
@@ -214,10 +214,10 @@
"cell_type": "markdown",
"metadata": {
"papermill": {
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"exception": false,
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+ "start_time": "2020-03-15T16:43:49.653709",
"status": "completed"
},
"tags": []
@@ -231,10 +231,10 @@
"execution_count": 8,
"metadata": {
"papermill": {
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"exception": false,
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+ "start_time": "2020-03-15T16:43:49.667958",
"status": "completed"
},
"tags": []
@@ -260,10 +260,10 @@
"execution_count": 9,
"metadata": {
"papermill": {
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"status": "completed"
},
"tags": []
@@ -278,10 +278,10 @@
"cell_type": "markdown",
"metadata": {
"papermill": {
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"exception": false,
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"status": "completed"
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"tags": []
@@ -295,10 +295,10 @@
"execution_count": 10,
"metadata": {
"papermill": {
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"exception": false,
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"status": "completed"
},
"tags": []
@@ -325,8 +325,8 @@
" <thead>\n",
" <tr style=\"text-align: right;\">\n",
" <th></th>\n",
- " <th>2020-03-12</th>\n",
" <th>2020-03-13</th>\n",
+ " <th>2020-03-14</th>\n",
" </tr>\n",
" <tr>\n",
" <th>Country/Region</th>\n",
@@ -337,7 +337,7 @@
" <tbody>\n",
" <tr>\n",
" <th>Congo (Kinshasa)</th>\n",
- " <td>1</td>\n",
+ " <td>2</td>\n",
" <td>2</td>\n",
" </tr>\n",
" <tr>\n",
@@ -346,13 +346,23 @@
" <td>696</td>\n",
" </tr>\n",
" <tr>\n",
+ " <th>Curacao</th>\n",
+ " <td>0</td>\n",
+ " <td>1</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>Eswatini</th>\n",
+ " <td>0</td>\n",
+ " <td>1</td>\n",
+ " </tr>\n",
+ " <tr>\n",
" <th>French Guiana</th>\n",
" <td>5</td>\n",
" <td>5</td>\n",
" </tr>\n",
" <tr>\n",
" <th>Guadeloupe</th>\n",
- " <td>0</td>\n",
+ " <td>1</td>\n",
" <td>1</td>\n",
" </tr>\n",
" <tr>\n",
@@ -363,33 +373,41 @@
" <tr>\n",
" <th>Martinique</th>\n",
" <td>3</td>\n",
- " <td>3</td>\n",
+ " <td>9</td>\n",
" </tr>\n",
" <tr>\n",
" <th>North Macedonia</th>\n",
- " <td>7</td>\n",
+ " <td>14</td>\n",
" <td>14</td>\n",
" </tr>\n",
" <tr>\n",
" <th>Reunion</th>\n",
- " <td>1</td>\n",
" <td>5</td>\n",
+ " <td>6</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>occupied Palestinian territory</th>\n",
+ " <td>0</td>\n",
+ " <td>0</td>\n",
" </tr>\n",
" </tbody>\n",
"</table>\n",
"</div>"
],
"text/plain": [
- " 2020-03-12 2020-03-13\n",
- "Country/Region \n",
- "Congo (Kinshasa) 1 2\n",
- "Cruise Ship 696 696\n",
- "French Guiana 5 5\n",
- "Guadeloupe 0 1\n",
- "Holy See 1 1\n",
- "Martinique 3 3\n",
- "North Macedonia 7 14\n",
- "Reunion 1 5"
+ " 2020-03-13 2020-03-14\n",
+ "Country/Region \n",
+ "Congo (Kinshasa) 2 2\n",
+ "Cruise Ship 696 696\n",
+ "Curacao 0 1\n",
+ "Eswatini 0 1\n",
+ "French Guiana 5 5\n",
+ "Guadeloupe 1 1\n",
+ "Holy See 1 1\n",
+ "Martinique 3 9\n",
+ "North Macedonia 14 14\n",
+ "Reunion 5 6\n",
+ "occupied Palestinian territory 0 0"
]
},
"execution_count": 10,
@@ -407,10 +425,10 @@
"cell_type": "markdown",
"metadata": {
"papermill": {
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"status": "completed"
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@@ -424,10 +442,10 @@
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"metadata": {
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"tags": []
@@ -459,20 +477,20 @@
"version": "3.7.6"
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"environment_variables": {},
"exception": null,
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+ "input_path": "/tmp/262jiqqx/notebooks/CompileGeoData.ipynb",
"output_path": "runs/CompileGeoData.run.ipynb",
"parameters": {
- "PAPERMILL_INPUT_PATH": "notebooks/CompileGeoData.ipynb",
+ "PAPERMILL_INPUT_PATH": "/tmp/262jiqqx/notebooks/CompileGeoData.ipynb",
"PAPERMILL_OUTPUT_PATH": "runs/CompileGeoData.run.ipynb",
- "out_folder": "./data/geodata/",
- "ts_folder": "./data/covid-19_jhu-csse/",
- "worldmap_path": "./data/worldmap/country_centroids.csv"
+ "out_folder": "data/geodata",
+ "ts_folder": "/tmp/262jiqqx/data/covid-19_jhu-csse",
+ "worldmap_path": "/tmp/262jiqqx/data/worldmap/country_centroids.csv"
},
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"version": "1.1.0"
}
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diff --git a/runs/Dashboard.run.ipynb b/runs/Dashboard.run.ipynb
index 97ed85143c3d9761aef8bb6b781fd8d2526c70b4..892ce26f8b5fcbf02c414ed84df69cef8d66febb 100644
--- a/runs/Dashboard.run.ipynb
+++ b/runs/Dashboard.run.ipynb
@@ -5,10 +5,10 @@
"execution_count": 1,
"metadata": {
"papermill": {
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"exception": false,
- "start_time": "2020-03-15T16:37:29.248196",
+ "start_time": "2020-03-15T16:43:45.680010",
"status": "completed"
},
"tags": []
@@ -25,10 +25,10 @@
"execution_count": 2,
"metadata": {
"papermill": {
- "duration": 0.023318,
- "end_time": "2020-03-15T16:37:29.619560",
+ "duration": 0.021561,
+ "end_time": "2020-03-15T16:43:46.016060",
"exception": false,
- "start_time": "2020-03-15T16:37:29.596242",
+ "start_time": "2020-03-15T16:43:45.994499",
"status": "completed"
},
"tags": [
@@ -49,10 +49,10 @@
"execution_count": 3,
"metadata": {
"papermill": {
- "duration": 0.021164,
- "end_time": "2020-03-15T16:37:29.651150",
+ "duration": 0.021241,
+ "end_time": "2020-03-15T16:43:46.046986",
"exception": false,
- "start_time": "2020-03-15T16:37:29.629986",
+ "start_time": "2020-03-15T16:43:46.025745",
"status": "completed"
},
"tags": [
@@ -62,11 +62,11 @@
"outputs": [],
"source": [
"# Parameters\n",
- "PAPERMILL_INPUT_PATH = \"notebooks/Dashboard.ipynb\"\n",
+ "PAPERMILL_INPUT_PATH = \"/tmp/e5179t23/notebooks/Dashboard.ipynb\"\n",
"PAPERMILL_OUTPUT_PATH = \"runs/Dashboard.run.ipynb\"\n",
- "ts_folder = \"./data/covid-19_jhu-csse/\"\n",
- "rates_folder = \"./data/covid-19_rates/\"\n",
- "geodata_path = \"./data/geodata/geo_data.csv\"\n"
+ "ts_folder = \"/tmp/e5179t23/data/covid-19_jhu-csse\"\n",
+ "rates_folder = \"/tmp/e5179t23/data/covid-19_rates\"\n",
+ "geodata_path = \"/tmp/e5179t23/data/geodata/geo_data.csv\"\n"
]
},
{
@@ -74,10 +74,10 @@
"execution_count": 4,
"metadata": {
"papermill": {
- "duration": 0.018422,
- "end_time": "2020-03-15T16:37:29.679468",
+ "duration": 0.018914,
+ "end_time": "2020-03-15T16:43:46.075312",
"exception": false,
- "start_time": "2020-03-15T16:37:29.661046",
+ "start_time": "2020-03-15T16:43:46.056398",
"status": "completed"
},
"tags": []
@@ -92,10 +92,10 @@
"execution_count": 5,
"metadata": {
"papermill": {
- "duration": 0.081996,
- "end_time": "2020-03-15T16:37:29.770910",
+ "duration": 0.083927,
+ "end_time": "2020-03-15T16:43:46.168567",
"exception": false,
- "start_time": "2020-03-15T16:37:29.688914",
+ "start_time": "2020-03-15T16:43:46.084640",
"status": "completed"
},
"tags": []
@@ -122,10 +122,10 @@
"execution_count": 6,
"metadata": {
"papermill": {
- "duration": 0.058057,
- "end_time": "2020-03-15T16:37:29.848129",
+ "duration": 0.05099,
+ "end_time": "2020-03-15T16:43:46.238223",
"exception": false,
- "start_time": "2020-03-15T16:37:29.790072",
+ "start_time": "2020-03-15T16:43:46.187233",
"status": "completed"
},
"tags": []
@@ -152,10 +152,10 @@
"execution_count": 7,
"metadata": {
"papermill": {
- "duration": 0.032963,
- "end_time": "2020-03-15T16:37:29.896281",
+ "duration": 0.035159,
+ "end_time": "2020-03-15T16:43:46.292298",
"exception": false,
- "start_time": "2020-03-15T16:37:29.863318",
+ "start_time": "2020-03-15T16:43:46.257139",
"status": "completed"
},
"tags": []
@@ -173,10 +173,10 @@
"execution_count": 8,
"metadata": {
"papermill": {
- "duration": 0.03569,
- "end_time": "2020-03-15T16:37:29.945698",
+ "duration": 0.03375,
+ "end_time": "2020-03-15T16:43:46.338662",
"exception": false,
- "start_time": "2020-03-15T16:37:29.910008",
+ "start_time": "2020-03-15T16:43:46.304912",
"status": "completed"
},
"tags": []
@@ -196,10 +196,10 @@
"cell_type": "markdown",
"metadata": {
"papermill": {
- "duration": 0.008775,
- "end_time": "2020-03-15T16:37:29.967726",
+ "duration": 0.008732,
+ "end_time": "2020-03-15T16:43:46.360234",
"exception": false,
- "start_time": "2020-03-15T16:37:29.958951",
+ "start_time": "2020-03-15T16:43:46.351502",
"status": "completed"
},
"tags": []
@@ -217,10 +217,10 @@
"execution_count": 9,
"metadata": {
"papermill": {
- "duration": 0.041164,
- "end_time": "2020-03-15T16:37:30.016520",
+ "duration": 0.039299,
+ "end_time": "2020-03-15T16:43:46.406504",
"exception": false,
- "start_time": "2020-03-15T16:37:29.975356",
+ "start_time": "2020-03-15T16:43:46.367205",
"status": "completed"
},
"tags": []
@@ -229,7 +229,7 @@
{
"data": {
"text/html": [
- "<em>Data up to Mar 13 2020; countries with 100 or more confirmed cases.</em>"
+ "<em>Data up to Mar 14 2020; countries with 100 or more confirmed cases.</em>"
],
"text/plain": [
"<IPython.core.display.HTML object>"
@@ -248,10 +248,10 @@
"cell_type": "markdown",
"metadata": {
"papermill": {
- "duration": 0.008127,
- "end_time": "2020-03-15T16:37:30.039436",
+ "duration": 0.009517,
+ "end_time": "2020-03-15T16:43:46.431623",
"exception": false,
- "start_time": "2020-03-15T16:37:30.031309",
+ "start_time": "2020-03-15T16:43:46.422106",
"status": "completed"
},
"tags": []
@@ -265,10 +265,10 @@
"execution_count": 10,
"metadata": {
"papermill": {
- "duration": 0.189114,
- "end_time": "2020-03-15T16:37:30.236186",
+ "duration": 0.19163,
+ "end_time": "2020-03-15T16:43:46.630939",
"exception": false,
- "start_time": "2020-03-15T16:37:30.047072",
+ "start_time": "2020-03-15T16:43:46.439309",
"status": "completed"
},
"tags": []
@@ -284,10 +284,10 @@
"execution_count": 11,
"metadata": {
"papermill": {
- "duration": 0.046044,
- "end_time": "2020-03-15T16:37:30.300949",
+ "duration": 0.048909,
+ "end_time": "2020-03-15T16:43:46.699290",
"exception": false,
- "start_time": "2020-03-15T16:37:30.254905",
+ "start_time": "2020-03-15T16:43:46.650381",
"status": "completed"
},
"tags": []
@@ -322,10 +322,10 @@
"execution_count": 12,
"metadata": {
"papermill": {
- "duration": 0.031175,
- "end_time": "2020-03-15T16:37:30.349234",
+ "duration": 0.032927,
+ "end_time": "2020-03-15T16:43:46.747943",
"exception": false,
- "start_time": "2020-03-15T16:37:30.318059",
+ "start_time": "2020-03-15T16:43:46.715016",
"status": "completed"
},
"tags": []
@@ -366,10 +366,10 @@
"execution_count": 13,
"metadata": {
"papermill": {
- "duration": 0.113317,
- "end_time": "2020-03-15T16:37:30.476323",
+ "duration": 0.118918,
+ "end_time": "2020-03-15T16:43:46.881935",
"exception": false,
- "start_time": "2020-03-15T16:37:30.363006",
+ "start_time": "2020-03-15T16:43:46.763017",
"status": "completed"
},
"tags": []
@@ -379,10 +379,10 @@
"data": {
"text/html": [
"\n",
- "<div id=\"altair-viz-0d5ef06b0f5c47e49467448e93085b54\"></div>\n",
+ "<div id=\"altair-viz-88d3169c31ab4a01b36f275f24a4faa8\"></div>\n",
"<script type=\"text/javascript\">\n",
" (function(spec, embedOpt){\n",
- " const outputDiv = document.getElementById(\"altair-viz-0d5ef06b0f5c47e49467448e93085b54\");\n",
+ " const outputDiv = document.getElementById(\"altair-viz-88d3169c31ab4a01b36f275f24a4faa8\");\n",
" const paths = {\n",
" \"vega\": \"https://cdn.jsdelivr.net/npm//vega@5?noext\",\n",
" \"vega-lib\": \"https://cdn.jsdelivr.net/npm//vega-lib?noext\",\n",
@@ -423,7 +423,7 @@
" .catch(showError)\n",
" .then(() => displayChart(vegaEmbed));\n",
" }\n",
- " })({\"config\": {\"view\": {\"continuousWidth\": 400, \"continuousHeight\": 300, \"stroke\": null}}, \"layer\": [{\"data\": {\"sphere\": true}, \"mark\": {\"type\": \"geoshape\", \"fill\": \"#cae6ef\"}}, {\"data\": {\"graticule\": true}, \"mark\": {\"type\": \"geoshape\", \"stroke\": \"white\", \"strokeWidth\": 0.5}}, {\"data\": {\"url\": \"https://vega.github.io/vega-datasets/data/world-110m.json\", \"format\": {\"feature\": \"countries\", \"type\": \"topojson\"}}, \"mark\": {\"type\": \"geoshape\", \"fill\": \"#dddddd\", \"stroke\": \"#aaaaaa\"}}, {\"data\": {\"name\": \"data-95ea86d40d32f37e513861317827f4db\"}, \"mark\": {\"type\": \"circle\", \"opacity\": 0.6}, \"encoding\": {\"color\": {\"value\": \"steelblue\"}, \"latitude\": {\"field\": \"Lat\", \"type\": \"quantitative\"}, \"longitude\": {\"field\": \"Long\", \"type\": \"quantitative\"}, \"size\": {\"type\": \"quantitative\", \"field\": \"Confirmed/100k\", \"title\": \"Cases\"}, \"tooltip\": [{\"type\": \"nominal\", \"field\": \"Country/Region\"}, {\"type\": \"quantitative\", \"field\": \"Confirmed\"}, {\"type\": \"quantitative\", \"field\": \"Deaths\"}, {\"type\": \"quantitative\", \"field\": \"Recovered\"}, {\"type\": \"quantitative\", \"field\": \"Confirmed/100k\"}, {\"type\": \"quantitative\", \"field\": \"Deaths/100k\"}, {\"type\": \"quantitative\", \"field\": \"Recovered/100k\"}]}}], \"height\": 400, \"projection\": {\"type\": \"naturalEarth1\"}, \"title\": \"Confirmed cases per 100k inhabitants\", \"width\": 600, \"$schema\": \"https://vega.github.io/schema/vega-lite/v4.0.2.json\", \"datasets\": {\"data-95ea86d40d32f37e513861317827f4db\": [{\"Country/Region\": \"Australia\", \"Confirmed/100k\": 0.8002442665599246, \"Deaths/100k\": 0.012003663998398872, \"Recovered/100k\": 0.09202809065439137, \"Confirmed\": 200.0, \"Deaths\": 3.0, \"Recovered\": 23.0, \"Long\": 134.49100008, \"Lat\": -25.73288704}, {\"Country/Region\": \"Austria\", \"Confirmed/100k\": 5.696822563305657, \"Deaths/100k\": 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0.002698410334091263, \"Recovered/100k\": 0.021587282672730104, \"Confirmed\": 193.0, \"Deaths\": 1.0, \"Recovered\": 8.0, \"Long\": -98.30777028, \"Lat\": 61.36206324}, {\"Country/Region\": \"China\", \"Confirmed/100k\": 5.811966425653213, \"Deaths/100k\": 0.22832853460469724, \"Recovered/100k\": 4.609364341975832, \"Confirmed\": 80945.0, \"Deaths\": 3180.0, \"Recovered\": 64196.0, \"Long\": 103.81907349, \"Lat\": 36.56176546}, {\"Country/Region\": \"Czechia\", \"Confirmed/100k\": 1.3269720239476102, \"Deaths/100k\": 0.0, \"Recovered/100k\": 0.0, \"Confirmed\": 141.0, \"Deaths\": 0.0, \"Recovered\": 0.0, \"Long\": 15.31240163, \"Lat\": 49.73341233}, {\"Country/Region\": \"Denmark\", \"Confirmed/100k\": 13.868175744974597, \"Deaths/100k\": 0.0, \"Recovered/100k\": 0.01724897480718234, \"Confirmed\": 804.0, \"Deaths\": 0.0, \"Recovered\": 1.0, \"Long\": 10.02800992, \"Lat\": 55.98125296}, {\"Country/Region\": \"Finland\", \"Confirmed/100k\": 2.808963311314685, \"Deaths/100k\": 0.0, 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0.0, \"Recovered/100k\": 0.28282622591027623, \"Confirmed\": 134.0, \"Deaths\": 0.0, \"Recovered\": 1.0, \"Long\": -18.57396167, \"Lat\": 64.99575386}, {\"Country/Region\": \"Iran\", \"Confirmed/100k\": 13.892374852703725, \"Deaths/100k\": 0.6283597918241565, \"Recovered/100k\": 3.6173475175246668, \"Confirmed\": 11364.0, \"Deaths\": 514.0, \"Recovered\": 2959.0, \"Long\": 54.27407004, \"Lat\": 32.57503292}, {\"Country/Region\": \"Iraq\", \"Confirmed/100k\": 0.26279089130344285, \"Deaths/100k\": 0.023417010116148367, \"Recovered/100k\": 0.06244536030972898, \"Confirmed\": 101.0, \"Deaths\": 9.0, \"Recovered\": 24.0, \"Long\": 43.74353149, \"Lat\": 33.03970582}, {\"Country/Region\": \"Israel\", \"Confirmed/100k\": 1.8122875346135665, \"Deaths/100k\": 0.0, \"Recovered/100k\": 0.045025777257479915, \"Confirmed\": 161.0, \"Deaths\": 0.0, \"Recovered\": 4.0, \"Long\": 35.00444693, \"Lat\": 31.46110101}, {\"Country/Region\": \"Italy\", \"Confirmed/100k\": 29.22327497167319, \"Deaths/100k\": 2.0949414560667194, \"Recovered/100k\": 2.3812170262875267, \"Confirmed\": 17660.0, \"Deaths\": 1266.0, \"Recovered\": 1439.0, \"Long\": 12.07001339, \"Lat\": 42.79662641}, {\"Country/Region\": \"Japan\", \"Confirmed/100k\": 0.5540227504977115, \"Deaths/100k\": 0.01501630850136451, \"Recovered/100k\": 0.09325917911373748, \"Confirmed\": 701.0, \"Deaths\": 19.0, \"Recovered\": 118.0, \"Long\": 138.03089558, \"Lat\": 37.59230135}, {\"Country/Region\": \"Korea, South\", \"Confirmed/100k\": 15.452620201979823, \"Deaths/100k\": 0.12781964322981182, \"Recovered/100k\": 0.9876972431394551, \"Confirmed\": 7979.0, \"Deaths\": 66.0, \"Recovered\": 510.0, \"Long\": 127.83916086, \"Lat\": 36.38523983}, {\"Country/Region\": \"Malaysia\", \"Confirmed/100k\": 0.6248298171326115, \"Deaths/100k\": 0.0, \"Recovered/100k\": 0.08246484896166446, \"Confirmed\": 197.0, \"Deaths\": 0.0, \"Recovered\": 26.0, \"Long\": 109.69762284, \"Lat\": 3.78986846}, {\"Country/Region\": \"Netherlands\", \"Confirmed/100k\": 4.666004333928752, \"Deaths/100k\": 0.05803487977523322, \"Recovered/100k\": 0.0, \"Confirmed\": 804.0, \"Deaths\": 10.0, \"Recovered\": 0.0, \"Long\": 5.28144793, \"Lat\": 52.1007899}, {\"Country/Region\": \"Norway\", \"Confirmed/100k\": 18.741758142503603, \"Deaths/100k\": 0.0, \"Recovered/100k\": 0.018817026247493568, \"Confirmed\": 996.0, \"Deaths\": 0.0, \"Recovered\": 1.0, \"Long\": 15.34834656, \"Lat\": 68.75015572}, {\"Country/Region\": \"Portugal\", \"Confirmed/100k\": 1.0893074552785798, \"Deaths/100k\": 0.0, \"Recovered/100k\": 0.009725959422130177, \"Confirmed\": 112.0, \"Deaths\": 0.0, \"Recovered\": 1.0, \"Long\": -8.50104361, \"Lat\": 39.59550671}, {\"Country/Region\": \"Qatar\", \"Confirmed/100k\": 11.503851813132869, \"Deaths/100k\": 0.0, \"Recovered/100k\": 0.0, \"Confirmed\": 320.0, \"Deaths\": 0.0, \"Recovered\": 0.0, \"Long\": 51.18479632, \"Lat\": 25.30601188}, {\"Country/Region\": \"Singapore\", \"Confirmed/100k\": 3.5469319393417886, \"Deaths/100k\": 0.0, \"Recovered/100k\": 1.7202619905807677, \"Confirmed\": 200.0, \"Deaths\": 0.0, \"Recovered\": 97.0, \"Long\": 103.81725592, \"Lat\": 1.35876087}, {\"Country/Region\": \"Slovenia\", \"Confirmed/100k\": 6.820252958828889, \"Deaths/100k\": 0.0, \"Recovered/100k\": 0.0, \"Confirmed\": 141.0, \"Deaths\": 0.0, \"Recovered\": 0.0, \"Long\": 14.80444238, \"Lat\": 46.11554772}, {\"Country/Region\": \"Spain\", \"Confirmed/100k\": 11.197731586136207, \"Deaths/100k\": 0.28465181593197925, \"Recovered/100k\": 0.413066168984, \"Confirmed\": 5232.0, \"Deaths\": 133.0, \"Recovered\": 193.0, \"Long\": -3.64755047, \"Lat\": 40.24448698}, {\"Country/Region\": \"Sweden\", \"Confirmed/100k\": 7.993577641550892, \"Deaths/100k\": 0.009820119952765223, \"Recovered/100k\": 0.009820119952765223, \"Confirmed\": 814.0, \"Deaths\": 1.0, \"Recovered\": 1.0, \"Long\": 16.74558049, \"Lat\": 62.77966519}, {\"Country/Region\": \"Switzerland\", \"Confirmed/100k\": 13.373971105412135, \"Deaths/100k\": 0.12916038819976602, \"Recovered/100k\": 0.04696741389082401, \"Confirmed\": 1139.0, \"Deaths\": 11.0, \"Recovered\": 4.0, \"Long\": 8.20867471, \"Lat\": 46.79785878}, {\"Country/Region\": \"US\", \"Confirmed/100k\": 0.6660198337466559, \"Deaths/100k\": 0.01436573299040515, \"Recovered/100k\": 0.0036678467209545055, \"Confirmed\": 2179.0, \"Deaths\": 47.0, \"Recovered\": 12.0, \"Long\": -112.4616737, \"Lat\": 45.6795472}, {\"Country/Region\": \"United Kingdom\", \"Confirmed/100k\": 1.2047107166959414, \"Deaths/100k\": 0.012032067083105532, \"Recovered/100k\": 0.028576159322375637, \"Confirmed\": 801.0, \"Deaths\": 8.0, \"Recovered\": 19.0, \"Long\": -2.86563164, \"Lat\": 54.12387156}]}}, {\"mode\": \"vega-lite\"});\n",
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\"Netherlands\", \"Confirmed/100k\": 4.666004333928752, \"Deaths/100k\": 0.05803487977523322, \"Recovered/100k\": 0.0, \"Confirmed\": 804.0, \"Deaths\": 10.0, \"Recovered\": 0.0, \"Long\": 5.28144793, \"Lat\": 52.1007899}, {\"Country/Region\": \"Norway\", \"Confirmed/100k\": 18.741758142503603, \"Deaths/100k\": 0.0, \"Recovered/100k\": 0.018817026247493568, \"Confirmed\": 996.0, \"Deaths\": 0.0, \"Recovered\": 1.0, \"Long\": 15.34834656, \"Lat\": 68.75015572}, {\"Country/Region\": \"Portugal\", \"Confirmed/100k\": 1.0893074552785798, \"Deaths/100k\": 0.0, \"Recovered/100k\": 0.009725959422130177, \"Confirmed\": 112.0, \"Deaths\": 0.0, \"Recovered\": 1.0, \"Long\": -8.50104361, \"Lat\": 39.59550671}, {\"Country/Region\": \"Qatar\", \"Confirmed/100k\": 11.503851813132869, \"Deaths/100k\": 0.0, \"Recovered/100k\": 0.0, \"Confirmed\": 320.0, \"Deaths\": 0.0, \"Recovered\": 0.0, \"Long\": 51.18479632, \"Lat\": 25.30601188}, {\"Country/Region\": \"Singapore\", \"Confirmed/100k\": 3.5469319393417886, \"Deaths/100k\": 0.0, \"Recovered/100k\": 1.7202619905807677, \"Confirmed\": 200.0, \"Deaths\": 0.0, \"Recovered\": 97.0, \"Long\": 103.81725592, \"Lat\": 1.35876087}, {\"Country/Region\": \"Slovenia\", \"Confirmed/100k\": 6.820252958828889, \"Deaths/100k\": 0.0, \"Recovered/100k\": 0.0, \"Confirmed\": 141.0, \"Deaths\": 0.0, \"Recovered\": 0.0, \"Long\": 14.80444238, \"Lat\": 46.11554772}, {\"Country/Region\": \"Spain\", \"Confirmed/100k\": 11.197731586136207, \"Deaths/100k\": 0.28465181593197925, \"Recovered/100k\": 0.413066168984, \"Confirmed\": 5232.0, \"Deaths\": 133.0, \"Recovered\": 193.0, \"Long\": -3.64755047, \"Lat\": 40.24448698}, {\"Country/Region\": \"Sweden\", \"Confirmed/100k\": 7.993577641550892, \"Deaths/100k\": 0.009820119952765223, \"Recovered/100k\": 0.009820119952765223, \"Confirmed\": 814.0, \"Deaths\": 1.0, \"Recovered\": 1.0, \"Long\": 16.74558049, \"Lat\": 62.77966519}, {\"Country/Region\": \"Switzerland\", \"Confirmed/100k\": 13.373971105412135, \"Deaths/100k\": 0.12916038819976602, \"Recovered/100k\": 0.04696741389082401, \"Confirmed\": 1139.0, \"Deaths\": 11.0, \"Recovered\": 4.0, \"Long\": 8.20867471, \"Lat\": 46.79785878}, {\"Country/Region\": \"US\", \"Confirmed/100k\": 0.6660198337466559, \"Deaths/100k\": 0.01436573299040515, \"Recovered/100k\": 0.0036678467209545055, \"Confirmed\": 2179.0, \"Deaths\": 47.0, \"Recovered\": 12.0, \"Long\": -112.4616737, \"Lat\": 45.6795472}, {\"Country/Region\": \"United Kingdom\", \"Confirmed/100k\": 1.2047107166959414, \"Deaths/100k\": 0.012032067083105532, \"Recovered/100k\": 0.028576159322375637, \"Confirmed\": 801.0, \"Deaths\": 8.0, \"Recovered\": 19.0, \"Long\": -2.86563164, \"Lat\": 54.12387156}]}}, {\"mode\": \"vega-lite\"});\n",
+ " })({\"config\": {\"view\": {\"continuousWidth\": 400, \"continuousHeight\": 300}}, \"layer\": [{\"mark\": \"bar\", \"encoding\": {\"tooltip\": [{\"type\": \"nominal\", \"field\": \"Country/Region\"}, {\"type\": \"quantitative\", \"field\": \"Confirmed\"}, {\"type\": \"quantitative\", \"field\": \"Deaths\"}, {\"type\": \"quantitative\", \"field\": \"Recovered\"}, {\"type\": \"quantitative\", \"field\": \"Confirmed/100k\"}, {\"type\": \"quantitative\", \"field\": \"Deaths/100k\"}, {\"type\": \"quantitative\", \"field\": \"Recovered/100k\"}], \"x\": {\"type\": \"quantitative\", \"field\": \"Confirmed/100k\"}, \"y\": {\"type\": \"nominal\", \"field\": \"Country/Region\", \"sort\": \"-x\"}}}, {\"mark\": {\"type\": \"text\", \"align\": \"left\", \"baseline\": \"middle\", \"dx\": 3}, \"encoding\": {\"text\": {\"type\": \"quantitative\", \"field\": \"Confirmed/100k\", \"format\": \".3\"}, \"tooltip\": [{\"type\": \"nominal\", \"field\": \"Country/Region\"}, {\"type\": \"quantitative\", \"field\": \"Confirmed\"}, {\"type\": \"quantitative\", \"field\": \"Deaths\"}, {\"type\": \"quantitative\", \"field\": \"Recovered\"}, {\"type\": \"quantitative\", \"field\": \"Confirmed/100k\"}, {\"type\": \"quantitative\", \"field\": \"Deaths/100k\"}, {\"type\": \"quantitative\", \"field\": \"Recovered/100k\"}], \"x\": {\"type\": \"quantitative\", \"field\": \"Confirmed/100k\"}, \"y\": {\"type\": \"nominal\", \"field\": \"Country/Region\", \"sort\": \"-x\"}}}], \"data\": {\"name\": \"data-f3b3d5ed8d303f261562171c1d731858\"}, \"height\": 900, \"$schema\": \"https://vega.github.io/schema/vega-lite/v4.0.2.json\", \"datasets\": {\"data-f3b3d5ed8d303f261562171c1d731858\": [{\"Country/Region\": \"Australia\", \"Confirmed/100k\": 1.000305333199906, \"Deaths/100k\": 0.012003663998398872, \"Recovered/100k\": 0.09202809065439137, \"Confirmed\": 250.0, \"Deaths\": 3.0, \"Recovered\": 23.0, \"Long\": 134.49100008, \"Lat\": -25.73288704}, {\"Country/Region\": \"Austria\", \"Confirmed/100k\": 7.403608688423027, \"Deaths/100k\": 0.01130321937163821, \"Recovered/100k\": 0.06781931622982926, \"Confirmed\": 655.0, \"Deaths\": 1.0, \"Recovered\": 6.0, \"Long\": 14.1264761, \"Lat\": 47.58549439}, {\"Country/Region\": \"Bahrain\", \"Confirmed/100k\": 13.380577391029535, \"Deaths/100k\": 0.0, \"Recovered/100k\": 2.8035495485966644, \"Confirmed\": 210.0, \"Deaths\": 0.0, \"Recovered\": 44.0, \"Long\": 50.54196932, \"Lat\": 26.04205135}, {\"Country/Region\": \"Belgium\", \"Confirmed/100k\": 6.0321826135162215, \"Deaths/100k\": 0.035019928090079665, \"Recovered/100k\": 0.008754982022519914, \"Confirmed\": 689.0, \"Deaths\": 4.0, \"Recovered\": 1.0, \"Long\": 4.64065114, \"Lat\": 50.63981576}, {\"Country/Region\": \"Brazil\", \"Confirmed/100k\": 0.07208692453324421, \"Deaths/100k\": 0.0, \"Recovered/100k\": 0.0, \"Confirmed\": 151.0, \"Deaths\": 0.0, \"Recovered\": 0.0, \"Long\": -53.09783113, \"Lat\": -10.78777702}, {\"Country/Region\": \"Canada\", \"Confirmed/100k\": 0.53428524615007, \"Deaths/100k\": 0.002698410334091263, \"Recovered/100k\": 0.021587282672730104, \"Confirmed\": 198.0, \"Deaths\": 1.0, \"Recovered\": 8.0, \"Long\": -98.30777028, \"Lat\": 61.36206324}, {\"Country/Region\": \"China\", \"Confirmed/100k\": 5.814264071284455, \"Deaths/100k\": 0.2292619531423894, \"Recovered/100k\": 4.7144816296051655, \"Confirmed\": 80977.0, \"Deaths\": 3193.0, \"Recovered\": 65660.0, \"Long\": 103.81907349, \"Lat\": 36.56176546}, {\"Country/Region\": \"Czechia\", \"Confirmed/100k\": 1.7787071810361583, \"Deaths/100k\": 0.0, \"Recovered/100k\": 0.0, \"Confirmed\": 189.0, \"Deaths\": 0.0, \"Recovered\": 0.0, \"Long\": 15.31240163, \"Lat\": 49.73341233}, {\"Country/Region\": \"Denmark\", \"Confirmed/100k\": 14.420142938804432, \"Deaths/100k\": 0.01724897480718234, \"Recovered/100k\": 0.01724897480718234, \"Confirmed\": 836.0, \"Deaths\": 1.0, \"Recovered\": 1.0, \"Long\": 10.02800992, \"Lat\": 55.98125296}, {\"Country/Region\": \"Egypt\", \"Confirmed/100k\": 0.11074580236578434, \"Deaths/100k\": 0.002032033070931823, \"Recovered/100k\": 0.02743244645757961, \"Confirmed\": 109.0, \"Deaths\": 2.0, \"Recovered\": 27.0, \"Long\": 29.86190099, \"Lat\": 26.49593311}, {\"Country/Region\": \"Estonia\", \"Confirmed/100k\": 8.706290635665205, \"Deaths/100k\": 0.0, \"Recovered/100k\": 0.0, \"Confirmed\": 115.0, \"Deaths\": 0.0, \"Recovered\": 0.0, \"Long\": 25.54248537, \"Lat\": 58.67192972}, {\"Country/Region\": \"Finland\", \"Confirmed/100k\": 4.077527387392285, \"Deaths/100k\": 0.0, \"Recovered/100k\": 0.018122343943965717, \"Confirmed\": 225.0, \"Deaths\": 0.0, \"Recovered\": 1.0, \"Long\": 26.2746656, \"Lat\": 64.49884603}, {\"Country/Region\": \"France\", \"Confirmed/100k\": 6.687840449145809, \"Deaths/100k\": 0.13584675912327426, \"Recovered/100k\": 0.017913858345926282, \"Confirmed\": 4480.0, \"Deaths\": 91.0, \"Recovered\": 12.0, \"Long\": -2.76172945, \"Lat\": 42.17344011}, {\"Country/Region\": \"Germany\", \"Confirmed/100k\": 5.528897733624627, \"Deaths/100k\": 0.010852798168510723, \"Recovered/100k\": 0.055469857305721466, \"Confirmed\": 4585.0, \"Deaths\": 9.0, \"Recovered\": 46.0, \"Long\": 10.38578051, \"Lat\": 51.10698181}, {\"Country/Region\": \"Greece\", \"Confirmed/100k\": 2.1253454152384283, \"Deaths/100k\": 0.027965071253137214, \"Recovered/100k\": 0.07457352334169924, \"Confirmed\": 228.0, \"Deaths\": 3.0, \"Recovered\": 8.0, \"Long\": 22.95555794, \"Lat\": 39.07469623}, {\"Country/Region\": \"Iceland\", \"Confirmed/100k\": 44.1208912420031, \"Deaths/100k\": 0.0, \"Recovered/100k\": 0.28282622591027623, \"Confirmed\": 156.0, \"Deaths\": 0.0, \"Recovered\": 1.0, \"Long\": -18.57396167, \"Lat\": 64.99575386}, {\"Country/Region\": \"India\", \"Confirmed/100k\": 0.007540935480311991, \"Deaths/100k\": 0.00014786148000611743, \"Recovered/100k\": 0.00029572296001223485, \"Confirmed\": 102.0, \"Deaths\": 2.0, \"Recovered\": 4.0, \"Long\": 79.61197609999998, \"Lat\": 22.88578212}, {\"Country/Region\": \"Iran\", \"Confirmed/100k\": 15.561073521653087, \"Deaths/100k\": 0.7469413089582871, \"Recovered/100k\": 3.6173475175246668, \"Confirmed\": 12729.0, \"Deaths\": 611.0, \"Recovered\": 2959.0, \"Long\": 54.27407004, \"Lat\": 32.57503292}, {\"Country/Region\": \"Iraq\", \"Confirmed/100k\": 0.2862079014195912, \"Deaths/100k\": 0.026018900129053748, \"Recovered/100k\": 0.06764914033553975, \"Confirmed\": 110.0, \"Deaths\": 10.0, \"Recovered\": 26.0, \"Long\": 43.74353149, \"Lat\": 33.03970582}, {\"Country/Region\": \"Ireland\", \"Confirmed/100k\": 2.657872474042476, \"Deaths/100k\": 0.04120732517895311, \"Recovered/100k\": 0.0, \"Confirmed\": 129.0, \"Deaths\": 2.0, \"Recovered\": 0.0, \"Long\": -8.13793569, \"Lat\": 53.17544870000001}, {\"Country/Region\": \"Israel\", \"Confirmed/100k\": 2.1724937526734056, \"Deaths/100k\": 0.0, \"Recovered/100k\": 0.045025777257479915, \"Confirmed\": 193.0, \"Deaths\": 0.0, \"Recovered\": 4.0, \"Long\": 35.00444693, \"Lat\": 31.46110101}, {\"Country/Region\": \"Italy\", \"Confirmed/100k\": 35.0100129431308, \"Deaths/100k\": 2.3845265704519294, \"Recovered/100k\": 3.25328191360756, \"Confirmed\": 21157.0, \"Deaths\": 1441.0, \"Recovered\": 1966.0, \"Long\": 12.07001339, \"Lat\": 42.79662641}, {\"Country/Region\": \"Japan\", \"Confirmed/100k\": 0.6109266563976192, \"Deaths/100k\": 0.017387304580527327, \"Recovered/100k\": 0.09325917911373748, \"Confirmed\": 773.0, \"Deaths\": 22.0, \"Recovered\": 118.0, \"Long\": 138.03089558, \"Lat\": 37.59230135}, {\"Country/Region\": \"Korea, South\", \"Confirmed/100k\": 15.659842956913007, \"Deaths/100k\": 0.13943961079615835, \"Recovered/100k\": 0.9876972431394551, \"Confirmed\": 8086.0, \"Deaths\": 72.0, \"Recovered\": 510.0, \"Long\": 127.83916086, \"Lat\": 36.38523983}, {\"Country/Region\": \"Kuwait\", \"Confirmed/100k\": 2.513711206970521, \"Deaths/100k\": 0.0, \"Recovered/100k\": 0.1208515003351212, \"Confirmed\": 104.0, \"Deaths\": 0.0, \"Recovered\": 5.0, \"Long\": 47.58700459, \"Lat\": 29.33431262}, {\"Country/Region\": \"Malaysia\", \"Confirmed/100k\": 0.7548705404952363, \"Deaths/100k\": 0.0, \"Recovered/100k\": 0.11101037360224064, \"Confirmed\": 238.0, \"Deaths\": 0.0, \"Recovered\": 35.0, \"Long\": 109.69762284, \"Lat\": 3.78986846}, {\"Country/Region\": \"Netherlands\", \"Confirmed/100k\": 5.565544970444868, \"Deaths/100k\": 0.06964185573027988, \"Recovered/100k\": 0.011606975955046644, \"Confirmed\": 959.0, \"Deaths\": 12.0, \"Recovered\": 2.0, \"Long\": 5.28144793, \"Lat\": 52.1007899}, {\"Country/Region\": \"Norway\", \"Confirmed/100k\": 20.510558609767997, \"Deaths/100k\": 0.056451078742480724, \"Recovered/100k\": 0.018817026247493568, \"Confirmed\": 1090.0, \"Deaths\": 3.0, \"Recovered\": 1.0, \"Long\": 15.34834656, \"Lat\": 68.75015572}, {\"Country/Region\": \"Philippines\", \"Confirmed/100k\": 0.10407688667814162, \"Deaths/100k\": 0.007501036877703902, \"Recovered/100k\": 0.0018752592194259754, \"Confirmed\": 111.0, \"Deaths\": 8.0, \"Recovered\": 2.0, \"Long\": 122.88393253, \"Lat\": 11.77536778}, {\"Country/Region\": \"Poland\", \"Confirmed/100k\": 0.2712057343529827, \"Deaths/100k\": 0.007899196146203378, \"Recovered/100k\": 0.0, \"Confirmed\": 103.0, \"Deaths\": 3.0, \"Recovered\": 0.0, \"Long\": 19.39012835, \"Lat\": 52.12759564}, {\"Country/Region\": \"Portugal\", \"Confirmed/100k\": 1.6436871423399997, \"Deaths/100k\": 0.0, \"Recovered/100k\": 0.01945191884426035, \"Confirmed\": 169.0, \"Deaths\": 0.0, \"Recovered\": 2.0, \"Long\": -8.50104361, \"Lat\": 39.59550671}, {\"Country/Region\": \"Qatar\", \"Confirmed/100k\": 12.114993940705553, \"Deaths/100k\": 0.0, \"Recovered/100k\": 0.14379814766416085, \"Confirmed\": 337.0, \"Deaths\": 0.0, \"Recovered\": 4.0, \"Long\": 51.18479632, \"Lat\": 25.30601188}, {\"Country/Region\": \"Romania\", \"Confirmed/100k\": 0.6316134550303544, \"Deaths/100k\": 0.0, \"Recovered/100k\": 0.046215618660757636, \"Confirmed\": 123.0, \"Deaths\": 0.0, \"Recovered\": 9.0, \"Long\": 24.97293039, \"Lat\": 45.85243127}, {\"Country/Region\": \"Saudi Arabia\", \"Confirmed/100k\": 0.30563846287354696, \"Deaths/100k\": 0.0, \"Recovered/100k\": 0.0029673637172189025, \"Confirmed\": 103.0, \"Deaths\": 0.0, \"Recovered\": 1.0, \"Long\": 44.53686271, \"Lat\": 24.12245841}, {\"Country/Region\": \"Singapore\", \"Confirmed/100k\": 3.7597478557022965, \"Deaths/100k\": 0.0, \"Recovered/100k\": 1.8621392681544395, \"Confirmed\": 212.0, \"Deaths\": 0.0, \"Recovered\": 105.0, \"Long\": 103.81725592, \"Lat\": 1.35876087}, {\"Country/Region\": \"Slovenia\", \"Confirmed/100k\": 8.755076493248433, \"Deaths/100k\": 0.04837058836048858, \"Recovered/100k\": 0.0, \"Confirmed\": 181.0, \"Deaths\": 1.0, \"Recovered\": 0.0, \"Long\": 14.80444238, \"Lat\": 46.11554772}, {\"Country/Region\": \"Spain\", \"Confirmed/100k\": 13.678268839257742, \"Deaths/100k\": 0.4173466474190673, \"Recovered/100k\": 1.1065036754649118, \"Confirmed\": 6391.0, \"Deaths\": 195.0, \"Recovered\": 517.0, \"Long\": -3.64755047, \"Lat\": 40.24448698}, {\"Country/Region\": \"Sweden\", \"Confirmed/100k\": 9.437135274607376, \"Deaths/100k\": 0.019640239905530446, \"Recovered/100k\": 0.009820119952765223, \"Confirmed\": 961.0, \"Deaths\": 2.0, \"Recovered\": 1.0, \"Long\": 16.74558049, \"Lat\": 62.77966519}, {\"Country/Region\": \"Switzerland\", \"Confirmed/100k\": 15.957178869407455, \"Deaths/100k\": 0.15264409514517804, \"Recovered/100k\": 0.04696741389082401, \"Confirmed\": 1359.0, \"Deaths\": 13.0, \"Recovered\": 4.0, \"Long\": 8.20867471, \"Lat\": 46.79785878}, {\"Country/Region\": \"US\", \"Confirmed/100k\": 0.8335181673369116, \"Deaths/100k\": 0.01650531024429528, \"Recovered/100k\": 0.0036678467209545055, \"Confirmed\": 2727.0, \"Deaths\": 54.0, \"Recovered\": 12.0, \"Long\": -112.4616737, \"Lat\": 45.6795472}, {\"Country/Region\": \"United Kingdom\", \"Confirmed/100k\": 1.719081584498703, \"Deaths/100k\": 0.031584176093152026, \"Recovered/100k\": 0.028576159322375637, \"Confirmed\": 1143.0, \"Deaths\": 21.0, \"Recovered\": 19.0, \"Long\": -2.86563164, \"Lat\": 54.12387156}]}}, {\"mode\": \"vega-lite\"});\n",
"</script>"
],
"text/plain": [
@@ -575,20 +575,20 @@
"version": "3.7.6"
},
"papermill": {
- "duration": 2.502575,
- "end_time": "2020-03-15T16:37:30.908644",
+ "duration": 2.488601,
+ "end_time": "2020-03-15T16:43:47.325947",
"environment_variables": {},
"exception": null,
- "input_path": "notebooks/Dashboard.ipynb",
+ "input_path": "/tmp/e5179t23/notebooks/Dashboard.ipynb",
"output_path": "runs/Dashboard.run.ipynb",
"parameters": {
- "PAPERMILL_INPUT_PATH": "notebooks/Dashboard.ipynb",
+ "PAPERMILL_INPUT_PATH": "/tmp/e5179t23/notebooks/Dashboard.ipynb",
"PAPERMILL_OUTPUT_PATH": "runs/Dashboard.run.ipynb",
- "geodata_path": "./data/geodata/geo_data.csv",
- "rates_folder": "./data/covid-19_rates/",
- "ts_folder": "./data/covid-19_jhu-csse/"
+ "geodata_path": "/tmp/e5179t23/data/geodata/geo_data.csv",
+ "rates_folder": "/tmp/e5179t23/data/covid-19_rates",
+ "ts_folder": "/tmp/e5179t23/data/covid-19_jhu-csse"
},
- "start_time": "2020-03-15T16:37:28.406069",
+ "start_time": "2020-03-15T16:43:44.837346",
"version": "1.1.0"
}
},
diff --git a/runs/ToRates.run.ipynb b/runs/ToRates.run.ipynb
index 62734fea1c58a1e56626aa2e65accc4d16c2b197..34d9fda62a409a688294e098eff51be66cbf3af5 100644
--- a/runs/ToRates.run.ipynb
+++ b/runs/ToRates.run.ipynb
@@ -4,10 +4,10 @@
"cell_type": "markdown",
"metadata": {
"papermill": {
- "duration": 0.02643,
- "end_time": "2020-03-15T16:12:44.459053",
+ "duration": 0.026762,
+ "end_time": "2020-03-15T16:43:42.228951",
"exception": false,
- "start_time": "2020-03-15T16:12:44.432623",
+ "start_time": "2020-03-15T16:43:42.202189",
"status": "completed"
},
"tags": []
@@ -21,10 +21,10 @@
"execution_count": 1,
"metadata": {
"papermill": {
- "duration": 0.285755,
- "end_time": "2020-03-15T16:12:44.756979",
+ "duration": 0.308159,
+ "end_time": "2020-03-15T16:43:42.549233",
"exception": false,
- "start_time": "2020-03-15T16:12:44.471224",
+ "start_time": "2020-03-15T16:43:42.241074",
"status": "completed"
},
"tags": []
@@ -40,10 +40,10 @@
"execution_count": 2,
"metadata": {
"papermill": {
- "duration": 0.026229,
- "end_time": "2020-03-15T16:12:44.806173",
+ "duration": 0.024464,
+ "end_time": "2020-03-15T16:43:42.596678",
"exception": false,
- "start_time": "2020-03-15T16:12:44.779944",
+ "start_time": "2020-03-15T16:43:42.572214",
"status": "completed"
},
"tags": [
@@ -64,10 +64,10 @@
"execution_count": 3,
"metadata": {
"papermill": {
- "duration": 0.024224,
- "end_time": "2020-03-15T16:12:44.844892",
+ "duration": 0.023161,
+ "end_time": "2020-03-15T16:43:42.632795",
"exception": false,
- "start_time": "2020-03-15T16:12:44.820668",
+ "start_time": "2020-03-15T16:43:42.609634",
"status": "completed"
},
"tags": [
@@ -77,22 +77,22 @@
"outputs": [],
"source": [
"# Parameters\n",
- "PAPERMILL_INPUT_PATH = \"notebooks/ToRates.ipynb\"\n",
+ "PAPERMILL_INPUT_PATH = \"/tmp/sj0uwmdy/notebooks/ToRates.ipynb\"\n",
"PAPERMILL_OUTPUT_PATH = \"runs/ToRates.run.ipynb\"\n",
- "ts_folder = \"./data/covid-19_jhu-csse/\"\n",
- "wb_path = \"./data/worldbank/SP.POP.TOTL.zip\"\n",
- "geodata_path = \"./data/geodata/geo_data.csv\"\n",
- "out_folder = \"./data/covid-19_rates/\"\n"
+ "ts_folder = \"/tmp/sj0uwmdy/data/covid-19_jhu-csse\"\n",
+ "wb_path = \"/tmp/sj0uwmdy/data/worldbank/SP.POP.TOTL.zip\"\n",
+ "geodata_path = \"/tmp/sj0uwmdy/data/geodata/geo_data.csv\"\n",
+ "out_folder = \"data/covid-19_rates\"\n"
]
},
{
"cell_type": "markdown",
"metadata": {
"papermill": {
- "duration": 0.009881,
- "end_time": "2020-03-15T16:12:44.866364",
+ "duration": 0.008873,
+ "end_time": "2020-03-15T16:43:42.653860",
"exception": false,
- "start_time": "2020-03-15T16:12:44.856483",
+ "start_time": "2020-03-15T16:43:42.644987",
"status": "completed"
},
"tags": [
@@ -110,10 +110,10 @@
"execution_count": 4,
"metadata": {
"papermill": {
- "duration": 0.031271,
- "end_time": "2020-03-15T16:12:44.906787",
+ "duration": 0.027857,
+ "end_time": "2020-03-15T16:43:42.690591",
"exception": false,
- "start_time": "2020-03-15T16:12:44.875516",
+ "start_time": "2020-03-15T16:43:42.662734",
"status": "completed"
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"tags": []
@@ -135,10 +135,10 @@
"execution_count": 5,
"metadata": {
"papermill": {
- "duration": 0.13379,
- "end_time": "2020-03-15T16:12:45.055605",
+ "duration": 0.132113,
+ "end_time": "2020-03-15T16:43:42.839054",
"exception": false,
- "start_time": "2020-03-15T16:12:44.921815",
+ "start_time": "2020-03-15T16:43:42.706941",
"status": "completed"
},
"tags": []
@@ -156,10 +156,10 @@
"cell_type": "markdown",
"metadata": {
"papermill": {
- "duration": 0.010981,
- "end_time": "2020-03-15T16:12:45.086595",
+ "duration": 0.01131,
+ "end_time": "2020-03-15T16:43:42.871122",
"exception": false,
- "start_time": "2020-03-15T16:12:45.075614",
+ "start_time": "2020-03-15T16:43:42.859812",
"status": "completed"
},
"tags": []
@@ -173,10 +173,10 @@
"execution_count": 6,
"metadata": {
"papermill": {
- "duration": 0.046657,
- "end_time": "2020-03-15T16:12:45.142594",
+ "duration": 0.042676,
+ "end_time": "2020-03-15T16:43:42.923258",
"exception": false,
- "start_time": "2020-03-15T16:12:45.095937",
+ "start_time": "2020-03-15T16:43:42.880582",
"status": "completed"
},
"tags": []
@@ -192,10 +192,10 @@
"cell_type": "markdown",
"metadata": {
"papermill": {
- "duration": 0.011166,
- "end_time": "2020-03-15T16:12:45.175964",
+ "duration": 0.011135,
+ "end_time": "2020-03-15T16:43:42.955397",
"exception": false,
- "start_time": "2020-03-15T16:12:45.164798",
+ "start_time": "2020-03-15T16:43:42.944262",
"status": "completed"
},
"tags": []
@@ -209,10 +209,10 @@
"execution_count": 7,
"metadata": {
"papermill": {
- "duration": 0.066877,
- "end_time": "2020-03-15T16:12:45.252472",
+ "duration": 0.063297,
+ "end_time": "2020-03-15T16:43:43.027899",
"exception": false,
- "start_time": "2020-03-15T16:12:45.185595",
+ "start_time": "2020-03-15T16:43:42.964602",
"status": "completed"
},
"tags": []
@@ -345,10 +345,10 @@
"cell_type": "markdown",
"metadata": {
"papermill": {
- "duration": 0.010445,
- "end_time": "2020-03-15T16:12:45.282710",
+ "duration": 0.010848,
+ "end_time": "2020-03-15T16:43:43.059760",
"exception": false,
- "start_time": "2020-03-15T16:12:45.272265",
+ "start_time": "2020-03-15T16:43:43.048912",
"status": "completed"
},
"tags": []
@@ -362,10 +362,10 @@
"execution_count": 8,
"metadata": {
"papermill": {
- "duration": 0.039483,
- "end_time": "2020-03-15T16:12:45.332210",
+ "duration": 0.041061,
+ "end_time": "2020-03-15T16:43:43.110716",
"exception": false,
- "start_time": "2020-03-15T16:12:45.292727",
+ "start_time": "2020-03-15T16:43:43.069655",
"status": "completed"
},
"tags": []
@@ -394,10 +394,10 @@
"execution_count": 9,
"metadata": {
"papermill": {
- "duration": 0.021992,
- "end_time": "2020-03-15T16:12:45.373057",
+ "duration": 0.034436,
+ "end_time": "2020-03-15T16:43:43.163584",
"exception": false,
- "start_time": "2020-03-15T16:12:45.351065",
+ "start_time": "2020-03-15T16:43:43.129148",
"status": "completed"
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"tags": []
@@ -412,10 +412,10 @@
"cell_type": "markdown",
"metadata": {
"papermill": {
- "duration": 0.009838,
- "end_time": "2020-03-15T16:12:45.395040",
+ "duration": 0.012003,
+ "end_time": "2020-03-15T16:43:43.199703",
"exception": false,
- "start_time": "2020-03-15T16:12:45.385202",
+ "start_time": "2020-03-15T16:43:43.187700",
"status": "completed"
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"tags": []
@@ -429,10 +429,10 @@
"execution_count": 10,
"metadata": {
"papermill": {
- "duration": 0.043595,
- "end_time": "2020-03-15T16:12:45.448638",
+ "duration": 0.050802,
+ "end_time": "2020-03-15T16:43:43.260325",
"exception": false,
- "start_time": "2020-03-15T16:12:45.405043",
+ "start_time": "2020-03-15T16:43:43.209523",
"status": "completed"
},
"tags": []
@@ -461,8 +461,8 @@
" <th></th>\n",
" <th></th>\n",
" <th></th>\n",
- " <th>2020-03-12 00:00:00</th>\n",
" <th>2020-03-13 00:00:00</th>\n",
+ " <th>2020-03-14 00:00:00</th>\n",
" </tr>\n",
" <tr>\n",
" <th>Country/Region</th>\n",
@@ -477,7 +477,7 @@
" <th>Congo (Kinshasa)</th>\n",
" <th>21.7587</th>\n",
" <th>-4.0383</th>\n",
- " <td>1</td>\n",
+ " <td>2</td>\n",
" <td>2</td>\n",
" </tr>\n",
" <tr>\n",
@@ -498,6 +498,13 @@
" <th>Guadeloupe</th>\n",
" <th>-61.5510</th>\n",
" <th>16.2650</th>\n",
+ " <td>1</td>\n",
+ " <td>1</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>Guernsey</th>\n",
+ " <th>-2.5800</th>\n",
+ " <th>49.4500</th>\n",
" <td>0</td>\n",
" <td>1</td>\n",
" </tr>\n",
@@ -509,41 +516,99 @@
" <td>1</td>\n",
" </tr>\n",
" <tr>\n",
+ " <th>Jersey</th>\n",
+ " <th>-2.1100</th>\n",
+ " <th>49.1900</th>\n",
+ " <td>0</td>\n",
+ " <td>2</td>\n",
+ " </tr>\n",
+ " <tr>\n",
" <th>Martinique</th>\n",
" <th>-61.0242</th>\n",
" <th>14.6415</th>\n",
" <td>3</td>\n",
- " <td>3</td>\n",
+ " <td>9</td>\n",
" </tr>\n",
" <tr>\n",
" <th>Reunion</th>\n",
" <th>55.5364</th>\n",
" <th>-21.1151</th>\n",
- " <td>1</td>\n",
" <td>5</td>\n",
+ " <td>6</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>Saint Lucia</th>\n",
+ " <th>-60.9789</th>\n",
+ " <th>13.9094</th>\n",
+ " <td>0</td>\n",
+ " <td>1</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>Saint Vincent and the Grenadines</th>\n",
+ " <th>-61.2872</th>\n",
+ " <th>12.9843</th>\n",
+ " <td>0</td>\n",
+ " <td>1</td>\n",
" </tr>\n",
" <tr>\n",
" <th>Taiwan*</th>\n",
" <th>121.0000</th>\n",
" <th>23.7000</th>\n",
- " <td>49</td>\n",
" <td>50</td>\n",
+ " <td>53</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>Venezuela</th>\n",
+ " <th>-66.5897</th>\n",
+ " <th>6.4238</th>\n",
+ " <td>0</td>\n",
+ " <td>2</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>occupied Palestinian territory</th>\n",
+ " <th>35.2332</th>\n",
+ " <th>31.9522</th>\n",
+ " <td>0</td>\n",
+ " <td>0</td>\n",
" </tr>\n",
" </tbody>\n",
"</table>\n",
"</div>"
],
"text/plain": [
- " 2020-03-12 00:00:00 2020-03-13 00:00:00\n",
- "Country/Region Long Lat \n",
- "Congo (Kinshasa) 21.7587 -4.0383 1 2\n",
- "Cruise Ship 139.6380 35.4437 696 696\n",
- "French Guiana -53.1258 3.9339 5 5\n",
- "Guadeloupe -61.5510 16.2650 0 1\n",
- "Holy See 12.4534 41.9029 1 1\n",
- "Martinique -61.0242 14.6415 3 3\n",
- "Reunion 55.5364 -21.1151 1 5\n",
- "Taiwan* 121.0000 23.7000 49 50"
+ " 2020-03-13 00:00:00 \\\n",
+ "Country/Region Long Lat \n",
+ "Congo (Kinshasa) 21.7587 -4.0383 2 \n",
+ "Cruise Ship 139.6380 35.4437 696 \n",
+ "French Guiana -53.1258 3.9339 5 \n",
+ "Guadeloupe -61.5510 16.2650 1 \n",
+ "Guernsey -2.5800 49.4500 0 \n",
+ "Holy See 12.4534 41.9029 1 \n",
+ "Jersey -2.1100 49.1900 0 \n",
+ "Martinique -61.0242 14.6415 3 \n",
+ "Reunion 55.5364 -21.1151 5 \n",
+ "Saint Lucia -60.9789 13.9094 0 \n",
+ "Saint Vincent and the Grenadines -61.2872 12.9843 0 \n",
+ "Taiwan* 121.0000 23.7000 50 \n",
+ "Venezuela -66.5897 6.4238 0 \n",
+ "occupied Palestinian territory 35.2332 31.9522 0 \n",
+ "\n",
+ " 2020-03-14 00:00:00 \n",
+ "Country/Region Long Lat \n",
+ "Congo (Kinshasa) 21.7587 -4.0383 2 \n",
+ "Cruise Ship 139.6380 35.4437 696 \n",
+ "French Guiana -53.1258 3.9339 5 \n",
+ "Guadeloupe -61.5510 16.2650 1 \n",
+ "Guernsey -2.5800 49.4500 1 \n",
+ "Holy See 12.4534 41.9029 1 \n",
+ "Jersey -2.1100 49.1900 2 \n",
+ "Martinique -61.0242 14.6415 9 \n",
+ "Reunion 55.5364 -21.1151 6 \n",
+ "Saint Lucia -60.9789 13.9094 1 \n",
+ "Saint Vincent and the Grenadines -61.2872 12.9843 1 \n",
+ "Taiwan* 121.0000 23.7000 53 \n",
+ "Venezuela -66.5897 6.4238 2 \n",
+ "occupied Palestinian territory 35.2332 31.9522 0 "
]
},
"execution_count": 10,
@@ -561,10 +626,10 @@
"cell_type": "markdown",
"metadata": {
"papermill": {
- "duration": 0.011436,
- "end_time": "2020-03-15T16:12:45.477570",
+ "duration": 0.011461,
+ "end_time": "2020-03-15T16:43:43.292694",
"exception": false,
- "start_time": "2020-03-15T16:12:45.466134",
+ "start_time": "2020-03-15T16:43:43.281233",
"status": "completed"
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"tags": []
@@ -578,10 +643,10 @@
"execution_count": 11,
"metadata": {
"papermill": {
- "duration": 0.038201,
- "end_time": "2020-03-15T16:12:45.525965",
+ "duration": 0.037434,
+ "end_time": "2020-03-15T16:43:43.340346",
"exception": false,
- "start_time": "2020-03-15T16:12:45.487764",
+ "start_time": "2020-03-15T16:43:43.302912",
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@@ -595,10 +660,10 @@
"cell_type": "markdown",
"metadata": {
"papermill": {
- "duration": 0.011731,
- "end_time": "2020-03-15T16:12:45.559855",
+ "duration": 0.010233,
+ "end_time": "2020-03-15T16:43:43.366112",
"exception": false,
- "start_time": "2020-03-15T16:12:45.548124",
+ "start_time": "2020-03-15T16:43:43.355879",
"status": "completed"
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"tags": []
@@ -612,10 +677,10 @@
"execution_count": 12,
"metadata": {
"papermill": {
- "duration": 0.054112,
- "end_time": "2020-03-15T16:12:45.625087",
+ "duration": 0.062288,
+ "end_time": "2020-03-15T16:43:43.438245",
"exception": false,
- "start_time": "2020-03-15T16:12:45.570975",
+ "start_time": "2020-03-15T16:43:43.375957",
"status": "completed"
},
"tags": []
@@ -669,6 +734,45 @@
" </thead>\n",
" <tbody>\n",
" <tr>\n",
+ " <th>Guernsey</th>\n",
+ " <td>Guernsey</td>\n",
+ " <td>Guernsey</td>\n",
+ " <td>Europe</td>\n",
+ " <td>Northern Europe</td>\n",
+ " <td>Europe & Central Asia</td>\n",
+ " <td>68633</td>\n",
+ " <td>2742.0</td>\n",
+ " <td>2. High income: nonOECD</td>\n",
+ " <td>-2.572391</td>\n",
+ " <td>49.468098</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>Jersey</th>\n",
+ " <td>Jersey</td>\n",
+ " <td>Jersey</td>\n",
+ " <td>Europe</td>\n",
+ " <td>Northern Europe</td>\n",
+ " <td>Europe & Central Asia</td>\n",
+ " <td>91626</td>\n",
+ " <td>5100.0</td>\n",
+ " <td>2. High income: nonOECD</td>\n",
+ " <td>-2.126899</td>\n",
+ " <td>49.218374</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>Saint Lucia</th>\n",
+ " <td>Saint Lucia</td>\n",
+ " <td>Saint Lucia</td>\n",
+ " <td>Americas</td>\n",
+ " <td>Caribbean</td>\n",
+ " <td>Latin America & Caribbean</td>\n",
+ " <td>160267</td>\n",
+ " <td>1778.0</td>\n",
+ " <td>3. Upper middle income</td>\n",
+ " <td>-60.969699</td>\n",
+ " <td>13.894795</td>\n",
+ " </tr>\n",
+ " <tr>\n",
" <th>Taiwan*</th>\n",
" <td>Taiwan</td>\n",
" <td>Taiwan</td>\n",
@@ -681,18 +785,90 @@
" <td>120.954273</td>\n",
" <td>23.753993</td>\n",
" </tr>\n",
+ " <tr>\n",
+ " <th>Saint Vincent and the Grenadines</th>\n",
+ " <td>St. Vin. and Gren.</td>\n",
+ " <td>Saint Vincent and the Grenadines</td>\n",
+ " <td>Americas</td>\n",
+ " <td>Caribbean</td>\n",
+ " <td>Latin America & Caribbean</td>\n",
+ " <td>104574</td>\n",
+ " <td>1070.0</td>\n",
+ " <td>3. Upper middle income</td>\n",
+ " <td>-61.201297</td>\n",
+ " <td>13.224723</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>Venezuela</th>\n",
+ " <td>Venezuela</td>\n",
+ " <td>Venezuela</td>\n",
+ " <td>Americas</td>\n",
+ " <td>South America</td>\n",
+ " <td>Latin America & Caribbean</td>\n",
+ " <td>26814843</td>\n",
+ " <td>357400.0</td>\n",
+ " <td>3. Upper middle income</td>\n",
+ " <td>-66.181841</td>\n",
+ " <td>7.124224</td>\n",
+ " </tr>\n",
" </tbody>\n",
"</table>\n",
"</div>"
],
"text/plain": [
- " name name_long region_un subregion region_wb \\\n",
- "name_jhu \n",
- "Taiwan* Taiwan Taiwan Asia Eastern Asia East Asia & Pacific \n",
+ " name \\\n",
+ "name_jhu \n",
+ "Guernsey Guernsey \n",
+ "Jersey Jersey \n",
+ "Saint Lucia Saint Lucia \n",
+ "Taiwan* Taiwan \n",
+ "Saint Vincent and the Grenadines St. Vin. and Gren. \n",
+ "Venezuela Venezuela \n",
+ "\n",
+ " name_long region_un \\\n",
+ "name_jhu \n",
+ "Guernsey Guernsey Europe \n",
+ "Jersey Jersey Europe \n",
+ "Saint Lucia Saint Lucia Americas \n",
+ "Taiwan* Taiwan Asia \n",
+ "Saint Vincent and the Grenadines Saint Vincent and the Grenadines Americas \n",
+ "Venezuela Venezuela Americas \n",
+ "\n",
+ " subregion region_wb \\\n",
+ "name_jhu \n",
+ "Guernsey Northern Europe Europe & Central Asia \n",
+ "Jersey Northern Europe Europe & Central Asia \n",
+ "Saint Lucia Caribbean Latin America & Caribbean \n",
+ "Taiwan* Eastern Asia East Asia & Pacific \n",
+ "Saint Vincent and the Grenadines Caribbean Latin America & Caribbean \n",
+ "Venezuela South America Latin America & Caribbean \n",
+ "\n",
+ " pop_est gdp_md_est \\\n",
+ "name_jhu \n",
+ "Guernsey 68633 2742.0 \n",
+ "Jersey 91626 5100.0 \n",
+ "Saint Lucia 160267 1778.0 \n",
+ "Taiwan* 22974347 712000.0 \n",
+ "Saint Vincent and the Grenadines 104574 1070.0 \n",
+ "Venezuela 26814843 357400.0 \n",
+ "\n",
+ " income_grp Longitude \\\n",
+ "name_jhu \n",
+ "Guernsey 2. High income: nonOECD -2.572391 \n",
+ "Jersey 2. High income: nonOECD -2.126899 \n",
+ "Saint Lucia 3. Upper middle income -60.969699 \n",
+ "Taiwan* 2. High income: nonOECD 120.954273 \n",
+ "Saint Vincent and the Grenadines 3. Upper middle income -61.201297 \n",
+ "Venezuela 3. Upper middle income -66.181841 \n",
"\n",
- " pop_est gdp_md_est income_grp Longitude Latitude \n",
- "name_jhu \n",
- "Taiwan* 22974347 712000.0 2. High income: nonOECD 120.954273 23.753993 "
+ " Latitude \n",
+ "name_jhu \n",
+ "Guernsey 49.468098 \n",
+ "Jersey 49.218374 \n",
+ "Saint Lucia 13.894795 \n",
+ "Taiwan* 23.753993 \n",
+ "Saint Vincent and the Grenadines 13.224723 \n",
+ "Venezuela 7.124224 "
]
},
"metadata": {},
@@ -713,10 +889,10 @@
"cell_type": "markdown",
"metadata": {
"papermill": {
- "duration": 0.011426,
- "end_time": "2020-03-15T16:12:45.657075",
+ "duration": 0.012259,
+ "end_time": "2020-03-15T16:43:43.474771",
"exception": false,
- "start_time": "2020-03-15T16:12:45.645649",
+ "start_time": "2020-03-15T16:43:43.462512",
"status": "completed"
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"tags": []
@@ -730,10 +906,10 @@
"execution_count": 13,
"metadata": {
"papermill": {
- "duration": 0.082905,
- "end_time": "2020-03-15T16:12:45.750274",
+ "duration": 0.080269,
+ "end_time": "2020-03-15T16:43:43.565663",
"exception": false,
- "start_time": "2020-03-15T16:12:45.667369",
+ "start_time": "2020-03-15T16:43:43.485394",
"status": "completed"
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"tags": []
@@ -758,10 +934,10 @@
"execution_count": 14,
"metadata": {
"papermill": {
- "duration": 0.057388,
- "end_time": "2020-03-15T16:12:45.829536",
+ "duration": 0.065907,
+ "end_time": "2020-03-15T16:43:43.656507",
"exception": false,
- "start_time": "2020-03-15T16:12:45.772148",
+ "start_time": "2020-03-15T16:43:43.590600",
"status": "completed"
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@@ -794,21 +970,21 @@
"version": "3.7.6"
},
"papermill": {
- "duration": 2.578814,
- "end_time": "2020-03-15T16:12:46.163138",
+ "duration": 2.541462,
+ "end_time": "2020-03-15T16:43:43.994344",
"environment_variables": {},
"exception": null,
- "input_path": "notebooks/ToRates.ipynb",
+ "input_path": "/tmp/sj0uwmdy/notebooks/ToRates.ipynb",
"output_path": "runs/ToRates.run.ipynb",
"parameters": {
- "PAPERMILL_INPUT_PATH": "notebooks/ToRates.ipynb",
+ "PAPERMILL_INPUT_PATH": "/tmp/sj0uwmdy/notebooks/ToRates.ipynb",
"PAPERMILL_OUTPUT_PATH": "runs/ToRates.run.ipynb",
- "geodata_path": "./data/geodata/geo_data.csv",
- "out_folder": "./data/covid-19_rates/",
- "ts_folder": "./data/covid-19_jhu-csse/",
- "wb_path": "./data/worldbank/SP.POP.TOTL.zip"
+ "geodata_path": "/tmp/sj0uwmdy/data/geodata/geo_data.csv",
+ "out_folder": "data/covid-19_rates",
+ "ts_folder": "/tmp/sj0uwmdy/data/covid-19_jhu-csse",
+ "wb_path": "/tmp/sj0uwmdy/data/worldbank/SP.POP.TOTL.zip"
},
- "start_time": "2020-03-15T16:12:43.584324",
+ "start_time": "2020-03-15T16:43:41.452882",
"version": "1.1.0"
}
},