diff --git a/.renku/workflow/3211ccd1126344e3ab7d66aa4a0dc091.cwl b/.renku/workflow/3211ccd1126344e3ab7d66aa4a0dc091.cwl
new file mode 100644
index 0000000000000000000000000000000000000000..3e48143b08a5a6c0c7a8549673035a284e75e8dd
--- /dev/null
+++ b/.renku/workflow/3211ccd1126344e3ab7d66aa4a0dc091.cwl
@@ -0,0 +1,191 @@
+class: Workflow
+cwlVersion: v1.0
+hints: []
+inputs:
+ input_1:
+ default: ts_folder
+ streamable: false
+ type: string
+ input_10:
+ default: worldmap_path
+ streamable: false
+ type: string
+ input_11:
+ default:
+ class: File
+ path: ../../data/worldmap/country_centroids.csv
+ streamable: false
+ type: File
+ input_12:
+ default: out_folder
+ streamable: false
+ type: string
+ input_13:
+ default:
+ class: Directory
+ listing: []
+ path: ../../data/geodata
+ streamable: false
+ type: Directory
+ input_14:
+ default:
+ class: File
+ path: ../../notebooks/process/CompileGeoData.ipynb
+ streamable: false
+ type: File
+ input_15:
+ default: runs/CompileGeoData.run.ipynb
+ streamable: false
+ type: string
+ input_16:
+ default: ts_folder
+ streamable: false
+ type: string
+ input_17:
+ default: runs/ToRates.run.ipynb
+ streamable: false
+ type: string
+ input_18:
+ default:
+ class: Directory
+ listing: []
+ path: ../../data/covid-19_jhu-csse
+ streamable: false
+ type: Directory
+ input_19:
+ default: wb_path
+ streamable: false
+ type: string
+ input_2:
+ default:
+ class: Directory
+ listing: []
+ path: ../../data/covid-19_jhu-csse
+ streamable: false
+ type: Directory
+ input_20:
+ default:
+ class: File
+ path: ../../data/worldbank/SP.POP.TOTL.zip
+ streamable: false
+ type: File
+ input_21:
+ default: geodata_path
+ streamable: false
+ type: string
+ input_22:
+ default:
+ class: File
+ path: ../../data/geodata/geo_data.csv
+ streamable: false
+ type: File
+ input_23:
+ default: out_folder
+ streamable: false
+ type: string
+ input_24:
+ default: data/covid-19_rates
+ streamable: false
+ type: string
+ input_25:
+ default:
+ class: File
+ path: ../../notebooks/process/ToRates.ipynb
+ streamable: false
+ type: File
+ input_3:
+ default: rates_folder
+ streamable: false
+ type: string
+ input_4:
+ default: geodata_path
+ streamable: false
+ type: string
+ input_5:
+ default:
+ class: File
+ path: ../../data/geodata/geo_data.csv
+ streamable: false
+ type: File
+ input_6:
+ default:
+ class: File
+ path: ../../notebooks/Dashboard.ipynb
+ streamable: false
+ type: File
+ input_7:
+ default: runs/Dashboard.run.ipynb
+ streamable: false
+ type: string
+ input_8:
+ default: ts_folder
+ streamable: false
+ type: string
+ input_9:
+ default:
+ class: Directory
+ listing: []
+ path: ../../data/covid-19_jhu-csse
+ streamable: false
+ type: Directory
+outputs:
+ output_0:
+ outputSource: step_2/output_0
+ streamable: false
+ type: File
+ output_1:
+ outputSource: step_1/output_0
+ streamable: false
+ type: File
+ output_2:
+ outputSource: step_3/output_0
+ streamable: false
+ type: File
+ output_3:
+ outputSource: step_3/output_1
+ streamable: false
+ type: Directory
+requirements: []
+steps:
+ step_1:
+ in:
+ input_1: input_1
+ input_2: input_2
+ input_3: input_3
+ input_4: step_3/output_1
+ input_5: input_4
+ input_6: input_5
+ input_7: input_6
+ input_8: input_7
+ out:
+ - output_0
+ run: 5ae9a9961e194e7795df04a9722452e8_papermill.cwl
+ step_2:
+ in:
+ input_1: input_8
+ input_2: input_9
+ input_3: input_10
+ input_4: input_11
+ input_5: input_12
+ input_6: input_13
+ input_7: input_14
+ input_8: input_15
+ out:
+ - output_0
+ run: a8b2f47629164158a118963ae58eea3b_papermill.cwl
+ step_3:
+ in:
+ input_1: input_16
+ input_10: input_17
+ input_2: input_18
+ input_3: input_19
+ input_4: input_20
+ input_5: input_21
+ input_6: input_22
+ input_7: input_23
+ input_8: input_24
+ input_9: input_25
+ out:
+ - output_0
+ - output_1
+ run: 7f7dffbbb1264ae2a646824c0fd83a20_papermill.cwl
diff --git a/data/covid-19_rates/ts_rates_19-covid-confirmed.csv b/data/covid-19_rates/ts_rates_19-covid-confirmed.csv
index 525bf8a37fbde82941d99cef911c67ea3a906177..7b5f02fe51aaaf65baebe04bd54484f86561947e 100644
--- a/data/covid-19_rates/ts_rates_19-covid-confirmed.csv
+++ b/data/covid-19_rates/ts_rates_19-covid-confirmed.csv
@@ -1,3 +1,3 @@
version https://git-lfs.github.com/spec/v1
-oid sha256:d32a8416d35d973167ab29853bd039e1b056c1d616b3388fa13c36d561505cfb
-size 80315
+oid sha256:b8f2140f3579b87a0b898231e4791d3943454507ff79055747aee72ef38cb173
+size 87096
diff --git a/data/covid-19_rates/ts_rates_19-covid-deaths.csv b/data/covid-19_rates/ts_rates_19-covid-deaths.csv
index 9b7466e75cb677bc8e4bbcfcdea26acf5b44abf8..14b7534f20ecd8eaf6985bf98fb36eef516fe967 100644
--- a/data/covid-19_rates/ts_rates_19-covid-deaths.csv
+++ b/data/covid-19_rates/ts_rates_19-covid-deaths.csv
@@ -1,3 +1,3 @@
version https://git-lfs.github.com/spec/v1
-oid sha256:366c29eb309d7a5545d01f4cebc458d3c5e7150e0a3699779c35b383e100e236
-size 45495
+oid sha256:101e9885fce5564a2452250eabaca0929e1ebfb00f17d762c1064fdeaae3837a
+size 49944
diff --git a/data/covid-19_rates/ts_rates_19-covid-recovered.csv b/data/covid-19_rates/ts_rates_19-covid-recovered.csv
index 11cd8c91a6aec682fd740e6069f6f5b727a71730..3914842abf31a1ea51925eddbb74d7b67e617692 100644
--- a/data/covid-19_rates/ts_rates_19-covid-recovered.csv
+++ b/data/covid-19_rates/ts_rates_19-covid-recovered.csv
@@ -1,3 +1,3 @@
version https://git-lfs.github.com/spec/v1
-oid sha256:b906aa714823501ad73cb07b108b63062181c547b30b3744eeaf85aca2032845
-size 57465
+oid sha256:5e501b13b10ffeee0fa4bed91482e1151ab37c8370548c668b1996b0869b5c5a
+size 62472
diff --git a/runs/CompileGeoData.run.ipynb b/runs/CompileGeoData.run.ipynb
index 050867815a5f5ea2aa6f2b9b6adc59601f123bf8..e4dacc5f75a4600fe74aa3ef3a257ac87aaf4d89 100644
--- a/runs/CompileGeoData.run.ipynb
+++ b/runs/CompileGeoData.run.ipynb
@@ -4,10 +4,10 @@
"cell_type": "markdown",
"metadata": {
"papermill": {
- "duration": 0.023622,
- "end_time": "2020-03-19T15:31:56.889647",
+ "duration": 0.015483,
+ "end_time": "2020-03-20T09:14:18.165661",
"exception": false,
- "start_time": "2020-03-19T15:31:56.866025",
+ "start_time": "2020-03-20T09:14:18.150178",
"status": "completed"
},
"tags": []
@@ -23,10 +23,10 @@
"execution_count": 1,
"metadata": {
"papermill": {
- "duration": 0.346428,
- "end_time": "2020-03-19T15:31:57.247558",
+ "duration": 0.322375,
+ "end_time": "2020-03-20T09:14:18.498594",
"exception": false,
- "start_time": "2020-03-19T15:31:56.901130",
+ "start_time": "2020-03-20T09:14:18.176219",
"status": "completed"
},
"tags": []
@@ -42,10 +42,10 @@
"execution_count": 2,
"metadata": {
"papermill": {
- "duration": 0.019927,
- "end_time": "2020-03-19T15:31:57.285179",
+ "duration": 0.019323,
+ "end_time": "2020-03-20T09:14:18.528885",
"exception": false,
- "start_time": "2020-03-19T15:31:57.265252",
+ "start_time": "2020-03-20T09:14:18.509562",
"status": "completed"
},
"tags": []
@@ -62,10 +62,10 @@
"cell_type": "markdown",
"metadata": {
"papermill": {
- "duration": 0.007207,
- "end_time": "2020-03-19T15:31:57.302610",
+ "duration": 0.009687,
+ "end_time": "2020-03-20T09:14:18.548819",
"exception": false,
- "start_time": "2020-03-19T15:31:57.295403",
+ "start_time": "2020-03-20T09:14:18.539132",
"status": "completed"
},
"tags": [
@@ -81,10 +81,10 @@
"execution_count": 3,
"metadata": {
"papermill": {
- "duration": 0.022457,
- "end_time": "2020-03-19T15:31:57.332752",
+ "duration": 0.024444,
+ "end_time": "2020-03-20T09:14:18.583123",
"exception": false,
- "start_time": "2020-03-19T15:31:57.310295",
+ "start_time": "2020-03-20T09:14:18.558679",
"status": "completed"
},
"tags": [
@@ -94,11 +94,11 @@
"outputs": [],
"source": [
"# Parameters\n",
- "PAPERMILL_INPUT_PATH = \"/tmp/ps76102a/notebooks/process/CompileGeoData.ipynb\"\n",
+ "PAPERMILL_INPUT_PATH = \"/tmp/vxmaiyhe/notebooks/process/CompileGeoData.ipynb\"\n",
"PAPERMILL_OUTPUT_PATH = \"runs/CompileGeoData.run.ipynb\"\n",
- "ts_folder = \"/tmp/ps76102a/data/covid-19_jhu-csse\"\n",
- "worldmap_path = \"/tmp/ps76102a/data/worldmap/country_centroids.csv\"\n",
- "out_folder = \"/tmp/ps76102a/data/geodata\"\n"
+ "ts_folder = \"/tmp/vxmaiyhe/data/covid-19_jhu-csse\"\n",
+ "worldmap_path = \"/tmp/vxmaiyhe/data/worldmap/country_centroids.csv\"\n",
+ "out_folder = \"/tmp/vxmaiyhe/data/geodata\"\n"
]
},
{
@@ -106,10 +106,10 @@
"execution_count": 4,
"metadata": {
"papermill": {
- "duration": 0.028453,
- "end_time": "2020-03-19T15:31:57.374528",
+ "duration": 0.031175,
+ "end_time": "2020-03-20T09:14:18.627531",
"exception": false,
- "start_time": "2020-03-19T15:31:57.346075",
+ "start_time": "2020-03-20T09:14:18.596356",
"status": "completed"
},
"tags": []
@@ -130,10 +130,10 @@
"execution_count": 5,
"metadata": {
"papermill": {
- "duration": 0.081205,
- "end_time": "2020-03-19T15:31:57.469382",
+ "duration": 0.059189,
+ "end_time": "2020-03-20T09:14:18.700819",
"exception": false,
- "start_time": "2020-03-19T15:31:57.388177",
+ "start_time": "2020-03-20T09:14:18.641630",
"status": "completed"
},
"tags": []
@@ -147,10 +147,10 @@
"cell_type": "markdown",
"metadata": {
"papermill": {
- "duration": 0.009849,
- "end_time": "2020-03-19T15:31:57.496810",
+ "duration": 0.009298,
+ "end_time": "2020-03-20T09:14:18.723004",
"exception": false,
- "start_time": "2020-03-19T15:31:57.486961",
+ "start_time": "2020-03-20T09:14:18.713706",
"status": "completed"
},
"tags": []
@@ -164,10 +164,10 @@
"execution_count": 6,
"metadata": {
"papermill": {
- "duration": 0.066777,
- "end_time": "2020-03-19T15:31:57.571356",
+ "duration": 0.04251,
+ "end_time": "2020-03-20T09:14:18.775041",
"exception": false,
- "start_time": "2020-03-19T15:31:57.504579",
+ "start_time": "2020-03-20T09:14:18.732531",
"status": "completed"
},
"tags": []
@@ -184,10 +184,10 @@
"execution_count": 7,
"metadata": {
"papermill": {
- "duration": 0.041217,
- "end_time": "2020-03-19T15:31:57.629637",
+ "duration": 0.036985,
+ "end_time": "2020-03-20T09:14:18.826525",
"exception": false,
- "start_time": "2020-03-19T15:31:57.588420",
+ "start_time": "2020-03-20T09:14:18.789540",
"status": "completed"
},
"tags": []
@@ -214,10 +214,10 @@
"cell_type": "markdown",
"metadata": {
"papermill": {
- "duration": 0.008941,
- "end_time": "2020-03-19T15:31:57.654289",
+ "duration": 0.010156,
+ "end_time": "2020-03-20T09:14:18.850018",
"exception": false,
- "start_time": "2020-03-19T15:31:57.645348",
+ "start_time": "2020-03-20T09:14:18.839862",
"status": "completed"
},
"tags": []
@@ -231,10 +231,10 @@
"execution_count": 8,
"metadata": {
"papermill": {
- "duration": 0.031425,
- "end_time": "2020-03-19T15:31:57.693675",
+ "duration": 0.025861,
+ "end_time": "2020-03-20T09:14:18.886195",
"exception": false,
- "start_time": "2020-03-19T15:31:57.662250",
+ "start_time": "2020-03-20T09:14:18.860334",
"status": "completed"
},
"tags": []
@@ -260,10 +260,10 @@
"execution_count": 9,
"metadata": {
"papermill": {
- "duration": 0.017224,
- "end_time": "2020-03-19T15:31:57.725092",
+ "duration": 0.020279,
+ "end_time": "2020-03-20T09:14:18.920285",
"exception": false,
- "start_time": "2020-03-19T15:31:57.707868",
+ "start_time": "2020-03-20T09:14:18.900006",
"status": "completed"
},
"tags": []
@@ -278,10 +278,10 @@
"cell_type": "markdown",
"metadata": {
"papermill": {
- "duration": 0.008352,
- "end_time": "2020-03-19T15:31:57.742659",
+ "duration": 0.011006,
+ "end_time": "2020-03-20T09:14:18.944832",
"exception": false,
- "start_time": "2020-03-19T15:31:57.734307",
+ "start_time": "2020-03-20T09:14:18.933826",
"status": "completed"
},
"tags": []
@@ -295,10 +295,10 @@
"execution_count": 10,
"metadata": {
"papermill": {
- "duration": 0.044489,
- "end_time": "2020-03-19T15:31:57.795095",
+ "duration": 0.035258,
+ "end_time": "2020-03-20T09:14:18.989997",
"exception": false,
- "start_time": "2020-03-19T15:31:57.750606",
+ "start_time": "2020-03-20T09:14:18.954739",
"status": "completed"
},
"tags": []
@@ -325,8 +325,8 @@
" <thead>\n",
" <tr style=\"text-align: right;\">\n",
" <th></th>\n",
- " <th>2020-03-16</th>\n",
- " <th>2020-03-17</th>\n",
+ " <th>2020-03-18</th>\n",
+ " <th>2020-03-19</th>\n",
" </tr>\n",
" <tr>\n",
" <th>Country/Region</th>\n",
@@ -336,19 +336,24 @@
" </thead>\n",
" <tbody>\n",
" <tr>\n",
- " <th>Congo (Brazzaville)</th>\n",
+ " <th>Bahamas, The</th>\n",
" <td>1</td>\n",
+ " <td>3</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>Congo (Brazzaville)</th>\n",
" <td>1</td>\n",
+ " <td>3</td>\n",
" </tr>\n",
" <tr>\n",
" <th>Congo (Kinshasa)</th>\n",
- " <td>2</td>\n",
- " <td>3</td>\n",
+ " <td>4</td>\n",
+ " <td>14</td>\n",
" </tr>\n",
" <tr>\n",
" <th>Cruise Ship</th>\n",
- " <td>696</td>\n",
- " <td>696</td>\n",
+ " <td>712</td>\n",
+ " <td>712</td>\n",
" </tr>\n",
" <tr>\n",
" <th>Eswatini</th>\n",
@@ -356,46 +361,41 @@
" <td>1</td>\n",
" </tr>\n",
" <tr>\n",
+ " <th>Gambia, The</th>\n",
+ " <td>1</td>\n",
+ " <td>1</td>\n",
+ " </tr>\n",
+ " <tr>\n",
" <th>Holy See</th>\n",
" <td>1</td>\n",
" <td>1</td>\n",
" </tr>\n",
" <tr>\n",
" <th>Martinique</th>\n",
- " <td>15</td>\n",
- " <td>16</td>\n",
+ " <td>19</td>\n",
+ " <td>23</td>\n",
" </tr>\n",
" <tr>\n",
" <th>North Macedonia</th>\n",
- " <td>18</td>\n",
- " <td>26</td>\n",
- " </tr>\n",
- " <tr>\n",
- " <th>Republic of the Congo</th>\n",
- " <td>1</td>\n",
- " <td>1</td>\n",
- " </tr>\n",
- " <tr>\n",
- " <th>The Bahamas</th>\n",
- " <td>1</td>\n",
- " <td>1</td>\n",
+ " <td>35</td>\n",
+ " <td>48</td>\n",
" </tr>\n",
" </tbody>\n",
"</table>\n",
"</div>"
],
"text/plain": [
- " 2020-03-16 2020-03-17\n",
- "Country/Region \n",
- "Congo (Brazzaville) 1 1\n",
- "Congo (Kinshasa) 2 3\n",
- "Cruise Ship 696 696\n",
- "Eswatini 1 1\n",
- "Holy See 1 1\n",
- "Martinique 15 16\n",
- "North Macedonia 18 26\n",
- "Republic of the Congo 1 1\n",
- "The Bahamas 1 1"
+ " 2020-03-18 2020-03-19\n",
+ "Country/Region \n",
+ "Bahamas, The 1 3\n",
+ "Congo (Brazzaville) 1 3\n",
+ "Congo (Kinshasa) 4 14\n",
+ "Cruise Ship 712 712\n",
+ "Eswatini 1 1\n",
+ "Gambia, The 1 1\n",
+ "Holy See 1 1\n",
+ "Martinique 19 23\n",
+ "North Macedonia 35 48"
]
},
"execution_count": 10,
@@ -413,10 +413,10 @@
"cell_type": "markdown",
"metadata": {
"papermill": {
- "duration": 0.0095,
- "end_time": "2020-03-19T15:31:57.820088",
+ "duration": 0.010928,
+ "end_time": "2020-03-20T09:14:19.015258",
"exception": false,
- "start_time": "2020-03-19T15:31:57.810588",
+ "start_time": "2020-03-20T09:14:19.004330",
"status": "completed"
},
"tags": []
@@ -430,10 +430,10 @@
"execution_count": 11,
"metadata": {
"papermill": {
- "duration": 0.032448,
- "end_time": "2020-03-19T15:31:57.860318",
+ "duration": 0.030814,
+ "end_time": "2020-03-20T09:14:19.057042",
"exception": false,
- "start_time": "2020-03-19T15:31:57.827870",
+ "start_time": "2020-03-20T09:14:19.026228",
"status": "completed"
},
"tags": []
@@ -462,23 +462,23 @@
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
- "version": "3.7.6"
+ "version": "3.7.3"
},
"papermill": {
- "duration": 2.208276,
- "end_time": "2020-03-19T15:31:58.185350",
+ "duration": 2.099246,
+ "end_time": "2020-03-20T09:14:19.381722",
"environment_variables": {},
"exception": null,
- "input_path": "/tmp/ps76102a/notebooks/process/CompileGeoData.ipynb",
+ "input_path": "/tmp/vxmaiyhe/notebooks/process/CompileGeoData.ipynb",
"output_path": "runs/CompileGeoData.run.ipynb",
"parameters": {
- "PAPERMILL_INPUT_PATH": "/tmp/ps76102a/notebooks/process/CompileGeoData.ipynb",
+ "PAPERMILL_INPUT_PATH": "/tmp/vxmaiyhe/notebooks/process/CompileGeoData.ipynb",
"PAPERMILL_OUTPUT_PATH": "runs/CompileGeoData.run.ipynb",
- "out_folder": "/tmp/ps76102a/data/geodata",
- "ts_folder": "/tmp/ps76102a/data/covid-19_jhu-csse",
- "worldmap_path": "/tmp/ps76102a/data/worldmap/country_centroids.csv"
+ "out_folder": "/tmp/vxmaiyhe/data/geodata",
+ "ts_folder": "/tmp/vxmaiyhe/data/covid-19_jhu-csse",
+ "worldmap_path": "/tmp/vxmaiyhe/data/worldmap/country_centroids.csv"
},
- "start_time": "2020-03-19T15:31:55.977074",
+ "start_time": "2020-03-20T09:14:17.282476",
"version": "1.1.0"
}
},
diff --git a/runs/Dashboard.run.ipynb b/runs/Dashboard.run.ipynb
index 6d5bdf89b6a3e12b2b8afd99eef3fb17117a31bc..70d3dd063e32c8b163b0b72a8ecb40bb29ba77e8 100644
--- a/runs/Dashboard.run.ipynb
+++ b/runs/Dashboard.run.ipynb
@@ -5,10 +5,10 @@
"execution_count": 1,
"metadata": {
"papermill": {
- "duration": 0.528967,
- "end_time": "2020-03-19T15:32:00.442402",
+ "duration": 0.553001,
+ "end_time": "2020-03-20T09:14:25.719408",
"exception": false,
- "start_time": "2020-03-19T15:31:59.913435",
+ "start_time": "2020-03-20T09:14:25.166407",
"status": "completed"
},
"tags": []
@@ -27,10 +27,10 @@
"execution_count": 2,
"metadata": {
"papermill": {
- "duration": 0.026062,
- "end_time": "2020-03-19T15:32:00.488574",
+ "duration": 0.029391,
+ "end_time": "2020-03-20T09:14:25.762495",
"exception": false,
- "start_time": "2020-03-19T15:32:00.462512",
+ "start_time": "2020-03-20T09:14:25.733104",
"status": "completed"
},
"tags": [
@@ -51,10 +51,10 @@
"execution_count": 3,
"metadata": {
"papermill": {
- "duration": 0.023309,
- "end_time": "2020-03-19T15:32:00.524187",
+ "duration": 0.025671,
+ "end_time": "2020-03-20T09:14:25.803507",
"exception": false,
- "start_time": "2020-03-19T15:32:00.500878",
+ "start_time": "2020-03-20T09:14:25.777836",
"status": "completed"
},
"tags": [
@@ -64,11 +64,11 @@
"outputs": [],
"source": [
"# Parameters\n",
- "PAPERMILL_INPUT_PATH = \"/tmp/v7bonu8b/notebooks/Dashboard.ipynb\"\n",
+ "PAPERMILL_INPUT_PATH = \"/tmp/zeab0m06/notebooks/Dashboard.ipynb\"\n",
"PAPERMILL_OUTPUT_PATH = \"runs/Dashboard.run.ipynb\"\n",
- "ts_folder = \"/tmp/v7bonu8b/data/covid-19_jhu-csse\"\n",
- "rates_folder = \"/tmp/v7bonu8b/data/covid-19_rates\"\n",
- "geodata_path = \"/tmp/v7bonu8b/data/geodata/geo_data.csv\"\n"
+ "ts_folder = \"/tmp/zeab0m06/data/covid-19_jhu-csse\"\n",
+ "rates_folder = \"/tmp/zeab0m06/data/covid-19_rates\"\n",
+ "geodata_path = \"/tmp/zeab0m06/data/geodata/geo_data.csv\"\n"
]
},
{
@@ -76,10 +76,10 @@
"execution_count": 4,
"metadata": {
"papermill": {
- "duration": 0.022296,
- "end_time": "2020-03-19T15:32:00.559035",
+ "duration": 0.022861,
+ "end_time": "2020-03-20T09:14:25.839629",
"exception": false,
- "start_time": "2020-03-19T15:32:00.536739",
+ "start_time": "2020-03-20T09:14:25.816768",
"status": "completed"
},
"tags": []
@@ -94,10 +94,10 @@
"execution_count": 5,
"metadata": {
"papermill": {
- "duration": 0.208757,
- "end_time": "2020-03-19T15:32:00.779851",
+ "duration": 0.149728,
+ "end_time": "2020-03-20T09:14:26.002986",
"exception": false,
- "start_time": "2020-03-19T15:32:00.571094",
+ "start_time": "2020-03-20T09:14:25.853258",
"status": "completed"
},
"tags": []
@@ -118,10 +118,10 @@
"cell_type": "markdown",
"metadata": {
"papermill": {
- "duration": 0.011482,
- "end_time": "2020-03-19T15:32:00.814561",
+ "duration": 0.011877,
+ "end_time": "2020-03-20T09:14:26.032141",
"exception": false,
- "start_time": "2020-03-19T15:32:00.803079",
+ "start_time": "2020-03-20T09:14:26.020264",
"status": "completed"
},
"tags": []
@@ -139,10 +139,10 @@
"execution_count": 6,
"metadata": {
"papermill": {
- "duration": 0.046953,
- "end_time": "2020-03-19T15:32:00.871171",
+ "duration": 0.036872,
+ "end_time": "2020-03-20T09:14:26.081115",
"exception": false,
- "start_time": "2020-03-19T15:32:00.824218",
+ "start_time": "2020-03-20T09:14:26.044243",
"status": "completed"
},
"tags": []
@@ -151,7 +151,7 @@
{
"data": {
"text/html": [
- "<em>Data up to Mar 17 2020; countries with 100 or more confirmed cases.</em>"
+ "<em>Data up to Mar 19 2020; countries with 100 or more confirmed cases.</em>"
],
"text/plain": [
"<IPython.core.display.HTML object>"
@@ -170,10 +170,10 @@
"cell_type": "markdown",
"metadata": {
"papermill": {
- "duration": 0.010505,
- "end_time": "2020-03-19T15:32:00.901667",
+ "duration": 0.013254,
+ "end_time": "2020-03-20T09:14:26.111471",
"exception": false,
- "start_time": "2020-03-19T15:32:00.891162",
+ "start_time": "2020-03-20T09:14:26.098217",
"status": "completed"
},
"tags": []
@@ -187,10 +187,10 @@
"execution_count": 7,
"metadata": {
"papermill": {
- "duration": 0.023482,
- "end_time": "2020-03-19T15:32:00.935825",
+ "duration": 0.023826,
+ "end_time": "2020-03-20T09:14:26.148435",
"exception": false,
- "start_time": "2020-03-19T15:32:00.912343",
+ "start_time": "2020-03-20T09:14:26.124609",
"status": "completed"
},
"tags": []
@@ -205,10 +205,10 @@
"execution_count": 8,
"metadata": {
"papermill": {
- "duration": 0.053373,
- "end_time": "2020-03-19T15:32:01.000860",
+ "duration": 0.047914,
+ "end_time": "2020-03-20T09:14:26.212529",
"exception": false,
- "start_time": "2020-03-19T15:32:00.947487",
+ "start_time": "2020-03-20T09:14:26.164615",
"status": "completed"
},
"tags": []
@@ -223,10 +223,10 @@
"execution_count": 9,
"metadata": {
"papermill": {
- "duration": 0.123691,
- "end_time": "2020-03-19T15:32:01.148368",
+ "duration": 0.138699,
+ "end_time": "2020-03-20T09:14:26.366211",
"exception": false,
- "start_time": "2020-03-19T15:32:01.024677",
+ "start_time": "2020-03-20T09:14:26.227512",
"status": "completed"
},
"tags": []
@@ -236,10 +236,10 @@
"data": {
"text/html": [
"\n",
- "<div id=\"altair-viz-3c95ca9cba0541b38426641ffd8e5932\"></div>\n",
+ "<div id=\"altair-viz-707539e0d9894b98bb4e6f79e36a3dd3\"></div>\n",
"<script type=\"text/javascript\">\n",
" (function(spec, embedOpt){\n",
- " const outputDiv = document.getElementById(\"altair-viz-3c95ca9cba0541b38426641ffd8e5932\");\n",
+ " const outputDiv = document.getElementById(\"altair-viz-707539e0d9894b98bb4e6f79e36a3dd3\");\n",
" const paths = {\n",
" \"vega\": \"https://cdn.jsdelivr.net/npm//vega@5?noext\",\n",
" \"vega-lib\": \"https://cdn.jsdelivr.net/npm//vega-lib?noext\",\n",
@@ -280,7 +280,7 @@
" .catch(showError)\n",
" .then(() => displayChart(vegaEmbed));\n",
" }\n",
- " })({\"config\": {\"view\": {\"continuousWidth\": 400, \"continuousHeight\": 300, \"stroke\": null}}, \"layer\": [{\"data\": {\"sphere\": true}, \"mark\": {\"type\": \"geoshape\", \"fill\": \"#cae6ef\"}}, {\"data\": {\"graticule\": true}, \"mark\": {\"type\": \"geoshape\", \"stroke\": \"white\", \"strokeWidth\": 0.5}}, {\"data\": {\"url\": \"https://vega.github.io/vega-datasets/data/world-110m.json\", \"format\": {\"feature\": \"countries\", \"type\": \"topojson\"}}, \"mark\": {\"type\": \"geoshape\", \"fill\": \"#dddddd\", \"stroke\": \"#aaaaaa\"}}, {\"data\": {\"name\": \"data-bf8987a5a7509b29fb49f1eb27d01ca8\"}, \"mark\": {\"type\": \"circle\", \"opacity\": 0.6}, \"encoding\": {\"color\": {\"value\": \"steelblue\"}, \"latitude\": {\"field\": \"Lat\", \"type\": \"quantitative\"}, \"longitude\": {\"field\": \"Long\", \"type\": \"quantitative\"}, \"size\": {\"type\": \"quantitative\", \"field\": \"Confirmed/100k\", \"title\": \"Cases\"}, \"tooltip\": [{\"type\": \"nominal\", \"field\": \"Country/Region\"}, {\"type\": \"quantitative\", \"field\": \"Confirmed\"}, {\"type\": \"quantitative\", \"field\": \"Deaths\"}, {\"type\": \"quantitative\", \"field\": \"Recovered\"}, {\"type\": \"quantitative\", \"field\": \"Confirmed/100k\"}, {\"type\": \"quantitative\", \"field\": \"Deaths/100k\"}, {\"type\": \"quantitative\", \"field\": \"Recovered/100k\"}]}}], \"height\": 400, \"projection\": {\"type\": \"naturalEarth1\"}, \"title\": \"Confirmed cases per 100k inhabitants\", \"width\": 600, \"$schema\": \"https://vega.github.io/schema/vega-lite/v4.0.2.json\", \"datasets\": {\"data-bf8987a5a7509b29fb49f1eb27d01ca8\": [{\"Country/Region\": \"Australia\", \"Confirmed/100k\": 1.8085520424254298, \"Deaths/100k\": 0.02000610666399812, \"Recovered/100k\": 0.09202809065439137, \"Confirmed\": 452.0, \"Deaths\": 5.0, \"Recovered\": 23.0, \"Long\": 134.49100008, \"Lat\": -25.73288704}, {\"Country/Region\": \"Austria\", \"Confirmed/100k\": 15.055888203022096, \"Deaths/100k\": 0.03390965811491463, \"Recovered/100k\": 0.01130321937163821, \"Confirmed\": 1332.0, \"Deaths\": 3.0, \"Recovered\": 1.0, \"Long\": 14.1264761, \"Lat\": 47.58549439}, {\"Country/Region\": \"Bahrain\", \"Confirmed/100k\": 14.527484024546352, \"Deaths/100k\": 0.06371703519537872, \"Recovered/100k\": 5.1610798508256766, \"Confirmed\": 228.0, \"Deaths\": 1.0, \"Recovered\": 81.0, \"Long\": 50.54196932, \"Lat\": 26.04205135}, {\"Country/Region\": \"Belgium\", \"Confirmed/100k\": 10.882442653992252, \"Deaths/100k\": 0.08754982022519915, \"Recovered/100k\": 0.008754982022519914, \"Confirmed\": 1243.0, \"Deaths\": 10.0, \"Recovered\": 1.0, \"Long\": 4.64065114, \"Lat\": 50.63981576}, {\"Country/Region\": \"Brazil\", \"Confirmed/100k\": 0.15324438923954564, \"Deaths/100k\": 0.0004773968512135378, \"Recovered/100k\": 0.0009547937024270756, \"Confirmed\": 321.0, \"Deaths\": 1.0, \"Recovered\": 2.0, \"Long\": -53.09783113, \"Lat\": -10.78777702}, {\"Country/Region\": \"Canada\", \"Confirmed/100k\": 1.2898401396956236, \"Deaths/100k\": 0.013492051670456312, \"Recovered/100k\": 0.02428569300682137, \"Confirmed\": 478.0, \"Deaths\": 5.0, \"Recovered\": 9.0, \"Long\": -98.30777028, \"Lat\": 61.36206324}, {\"Country/Region\": \"Chile\", \"Confirmed/100k\": 1.073192818044162, \"Deaths/100k\": 0.0, \"Recovered/100k\": 0.0, \"Confirmed\": 201.0, \"Deaths\": 0.0, \"Recovered\": 0.0, \"Long\": -71.38256213, \"Lat\": -37.73070989}, {\"Country/Region\": \"China\", \"Confirmed/100k\": 5.820079986788538, \"Deaths/100k\": 0.23191860590351324, \"Recovered/100k\": 4.939794504318857, \"Confirmed\": 81058.0, \"Deaths\": 3230.0, \"Recovered\": 68798.0, \"Long\": 103.81907349, \"Lat\": 36.56176546}, {\"Country/Region\": \"Czechia\", \"Confirmed/100k\": 3.7268150459805214, \"Deaths/100k\": 0.0, \"Recovered/100k\": 0.028233447318034257, \"Confirmed\": 396.0, \"Deaths\": 0.0, \"Recovered\": 3.0, \"Long\": 15.31240163, \"Lat\": 49.73341233}, {\"Country/Region\": \"Denmark\", \"Confirmed/100k\": 17.66295020255471, \"Deaths/100k\": 0.06899589922872934, \"Recovered/100k\": 0.01724897480718234, \"Confirmed\": 1024.0, \"Deaths\": 4.0, \"Recovered\": 1.0, \"Long\": 10.02800992, \"Lat\": 55.98125296}, {\"Country/Region\": \"Egypt\", \"Confirmed/100k\": 0.19913924095131866, \"Deaths/100k\": 0.004064066141863646, \"Recovered/100k\": 0.032512529134909166, \"Confirmed\": 196.0, \"Deaths\": 4.0, \"Recovered\": 32.0, \"Long\": 29.86190099, \"Lat\": 26.49593311}, {\"Country/Region\": \"Estonia\", \"Confirmed/100k\": 17.034046895866705, \"Deaths/100k\": 0.0, \"Recovered/100k\": 0.07570687509274092, \"Confirmed\": 225.0, \"Deaths\": 0.0, \"Recovered\": 1.0, \"Long\": 25.54248537, \"Lat\": 58.67192972}, {\"Country/Region\": \"Finland\", \"Confirmed/100k\": 5.817272406012994, \"Deaths/100k\": 0.0, \"Recovered/100k\": 0.18122343943965716, \"Confirmed\": 321.0, \"Deaths\": 0.0, \"Recovered\": 10.0, \"Long\": 26.2746656, \"Lat\": 64.49884603}, {\"Country/Region\": \"France\", \"Confirmed/100k\": 11.493232950440536, \"Deaths/100k\": 0.2209375862664241, \"Recovered/100k\": 0.017913858345926282, \"Confirmed\": 7699.0, \"Deaths\": 148.0, \"Recovered\": 12.0, \"Long\": -2.76172945, \"Lat\": 42.17344011}, {\"Country/Region\": \"Germany\", \"Confirmed/100k\": 11.162705849544864, \"Deaths/100k\": 0.028940795116028588, \"Recovered/100k\": 0.08079305303224649, \"Confirmed\": 9257.0, \"Deaths\": 24.0, \"Recovered\": 67.0, \"Long\": 10.38578051, \"Lat\": 51.10698181}, {\"Country/Region\": \"Greece\", \"Confirmed/100k\": 3.607494191654701, \"Deaths/100k\": 0.046608452088562034, \"Recovered/100k\": 0.07457352334169924, \"Confirmed\": 387.0, \"Deaths\": 5.0, \"Recovered\": 8.0, \"Long\": 22.95555794, \"Lat\": 39.07469623}, {\"Country/Region\": \"India\", \"Confirmed/100k\": 0.010498165080434338, \"Deaths/100k\": 0.00022179222000917617, \"Recovered/100k\": 0.001035030360042822, \"Confirmed\": 142.0, \"Deaths\": 3.0, \"Recovered\": 14.0, \"Long\": 79.61197609999998, \"Lat\": 22.88578212}, {\"Country/Region\": \"Indonesia\", \"Confirmed/100k\": 0.06425980448169917, \"Deaths/100k\": 0.0018680175721424183, \"Recovered/100k\": 0.0029888281154278693, \"Confirmed\": 172.0, \"Deaths\": 5.0, \"Recovered\": 8.0, \"Long\": 117.24011366, \"Lat\": -2.21505456}, {\"Country/Region\": \"Iran\", \"Confirmed/100k\": 19.766438665378963, \"Deaths/100k\": 1.207819988953826, \"Recovered/100k\": 6.5879978952147455, \"Confirmed\": 16169.0, \"Deaths\": 988.0, \"Recovered\": 5389.0, \"Long\": 54.27407004, \"Lat\": 32.57503292}, {\"Country/Region\": \"Iraq\", \"Confirmed/100k\": 0.4006910619874277, \"Deaths/100k\": 0.028620790141959118, \"Recovered/100k\": 0.08326048041297199, \"Confirmed\": 154.0, \"Deaths\": 11.0, \"Recovered\": 32.0, \"Long\": 43.74353149, \"Lat\": 33.03970582}, {\"Country/Region\": \"Ireland\", \"Confirmed/100k\": 4.594616757453272, \"Deaths/100k\": 0.04120732517895311, \"Recovered/100k\": 0.10301831294738276, \"Confirmed\": 223.0, \"Deaths\": 2.0, \"Recovered\": 5.0, \"Long\": -8.13793569, \"Lat\": 53.17544870000001}, {\"Country/Region\": \"Israel\", \"Confirmed/100k\": 3.7934217339426826, \"Deaths/100k\": 0.0, \"Recovered/100k\": 0.12382088745806975, \"Confirmed\": 337.0, \"Deaths\": 0.0, \"Recovered\": 11.0, \"Long\": 35.00444693, \"Lat\": 31.46110101}, {\"Country/Region\": \"Italy\", \"Confirmed/100k\": 52.135249221831025, \"Deaths/100k\": 4.141894521749604, \"Recovered/100k\": 4.86668469375373, \"Confirmed\": 31506.0, \"Deaths\": 2503.0, \"Recovered\": 2941.0, \"Long\": 12.07001339, \"Lat\": 42.79662641}, {\"Country/Region\": \"Japan\", \"Confirmed/100k\": 0.6939115191683177, \"Deaths/100k\": 0.02291962876524057, \"Recovered/100k\": 0.11380781179981522, \"Confirmed\": 878.0, \"Deaths\": 29.0, \"Recovered\": 144.0, \"Long\": 138.03089558, \"Lat\": 37.59230135}, {\"Country/Region\": \"Korea, South\", \"Confirmed/100k\": 16.11302169200052, \"Deaths/100k\": 0.15686956214567813, \"Recovered/100k\": 2.7248823943082607, \"Confirmed\": 8320.0, \"Deaths\": 81.0, \"Recovered\": 1407.0, \"Long\": 127.83916086, \"Lat\": 36.38523983}, {\"Country/Region\": \"Kuwait\", \"Confirmed/100k\": 3.142139008713152, \"Deaths/100k\": 0.0, \"Recovered/100k\": 0.2175327006032182, \"Confirmed\": 130.0, \"Deaths\": 0.0, \"Recovered\": 9.0, \"Long\": 47.58700459, \"Lat\": 29.33431262}, {\"Country/Region\": \"Lebanon\", \"Confirmed/100k\": 1.7520997820825897, \"Deaths/100k\": 0.04380249455206474, \"Recovered/100k\": 0.04380249455206474, \"Confirmed\": 120.0, \"Deaths\": 3.0, \"Recovered\": 3.0, \"Long\": 35.88016072, \"Lat\": 33.92306631}, {\"Country/Region\": \"Luxembourg\", \"Confirmed/100k\": 23.03662164652608, \"Deaths/100k\": 0.16454729747518626, \"Recovered/100k\": 0.0, \"Confirmed\": 140.0, \"Deaths\": 1.0, \"Recovered\": 0.0, \"Long\": 6.07182201, \"Lat\": 49.76725361}, {\"Country/Region\": \"Malaysia\", \"Confirmed/100k\": 2.1345708981230844, \"Deaths/100k\": 0.0063434499201280355, \"Recovered/100k\": 0.15541452304313688, \"Confirmed\": 673.0, \"Deaths\": 2.0, \"Recovered\": 49.0, \"Long\": 109.69762284, \"Lat\": 3.78986846}, {\"Country/Region\": \"Netherlands\", \"Confirmed/100k\": 9.912357465609835, \"Deaths/100k\": 0.2495499830335029, \"Recovered/100k\": 0.011606975955046644, \"Confirmed\": 1708.0, \"Deaths\": 43.0, \"Recovered\": 2.0, \"Long\": 5.28144793, \"Lat\": 52.1007899}, {\"Country/Region\": \"Norway\", \"Confirmed/100k\": 27.529309400083093, \"Deaths/100k\": 0.056451078742480724, \"Recovered/100k\": 0.018817026247493568, \"Confirmed\": 1463.0, \"Deaths\": 3.0, \"Recovered\": 1.0, \"Long\": 15.34834656, \"Lat\": 68.75015572}, {\"Country/Region\": \"Pakistan\", \"Confirmed/100k\": 0.11120795732517157, \"Deaths/100k\": 0.0, \"Recovered/100k\": 0.0009424403163150133, \"Confirmed\": 236.0, \"Deaths\": 0.0, \"Recovered\": 2.0, \"Long\": 69.33957937, \"Lat\": 29.9497515}, {\"Country/Region\": \"Peru\", \"Confirmed/100k\": 0.3657477998237909, \"Deaths/100k\": 0.0, \"Recovered/100k\": 0.0031260495711435115, \"Confirmed\": 117.0, \"Deaths\": 0.0, \"Recovered\": 1.0, \"Long\": -74.38242685, \"Lat\": -9.15280381}, {\"Country/Region\": \"Philippines\", \"Confirmed/100k\": 0.17533673701632868, \"Deaths/100k\": 0.01125155531655585, \"Recovered/100k\": 0.004688148048564938, \"Confirmed\": 187.0, \"Deaths\": 12.0, \"Recovered\": 5.0, \"Long\": 122.88393253, \"Lat\": 11.77536778}, {\"Country/Region\": \"Poland\", \"Confirmed/100k\": 0.6266695609321347, \"Deaths/100k\": 0.013165326910338962, \"Recovered/100k\": 0.034229849966881304, \"Confirmed\": 238.0, \"Deaths\": 5.0, \"Recovered\": 13.0, \"Long\": 19.39012835, \"Lat\": 52.12759564}, {\"Country/Region\": \"Portugal\", \"Confirmed/100k\": 4.357229821114319, \"Deaths/100k\": 0.009725959422130177, \"Recovered/100k\": 0.029177878266390532, \"Confirmed\": 448.0, \"Deaths\": 1.0, \"Recovered\": 3.0, \"Long\": -8.50104361, \"Lat\": 39.59550671}, {\"Country/Region\": \"Qatar\", \"Confirmed/100k\": 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@@ -323,10 +323,10 @@
"execution_count": 10,
"metadata": {
"papermill": {
- "duration": 0.099261,
- "end_time": "2020-03-19T15:32:01.268698",
+ "duration": 0.109091,
+ "end_time": "2020-03-20T09:14:26.492052",
"exception": false,
- "start_time": "2020-03-19T15:32:01.169437",
+ "start_time": "2020-03-20T09:14:26.382961",
"status": "completed"
},
"tags": []
@@ -336,10 +336,10 @@
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\"Confirmed/100k\": 15.17756953794941}, {\"Country/Region\": \"Italy\", \"Days\": 16, \"Confirmed\": 9994, \"Confirmed/100k\": 16.794281862259982}, {\"Country/Region\": \"Italy\", \"Days\": 17, \"Confirmed\": 12307, \"Confirmed/100k\": 20.62176968839136}, {\"Country/Region\": \"Italy\", \"Days\": 18, \"Confirmed\": 12307, \"Confirmed/100k\": 20.62176968839136}, {\"Country/Region\": \"Italy\", \"Days\": 19, \"Confirmed\": 17505, \"Confirmed/100k\": 29.22327497167319}, {\"Country/Region\": \"Italy\", \"Days\": 20, \"Confirmed\": 21002, \"Confirmed/100k\": 35.0100129431308}, {\"Country/Region\": \"Italy\", \"Days\": 21, \"Confirmed\": 24592, \"Confirmed/100k\": 40.95064471823311}, {\"Country/Region\": \"Italy\", \"Days\": 22, \"Confirmed\": 27825, \"Confirmed/100k\": 46.30052285998958}, {\"Country/Region\": \"Italy\", \"Days\": 23, \"Confirmed\": 31351, \"Confirmed/100k\": 52.135249221831025}, {\"Country/Region\": \"Italy\", \"Days\": 24, \"Confirmed\": 35558, \"Confirmed/100k\": 59.09687537165146}, {\"Country/Region\": \"Italy\", \"Days\": 25, \"Confirmed\": 40880, \"Confirmed/100k\": 67.90357239312625}, {\"Country/Region\": \"Korea, South\", \"Days\": 0, \"Confirmed\": 0, \"Confirmed/100k\": 0.20141277115000653}, {\"Country/Region\": \"Korea, South\", \"Days\": 1, \"Confirmed\": 100, \"Confirmed/100k\": 0.39507889725578205}, {\"Country/Region\": \"Korea, South\", \"Days\": 2, \"Confirmed\": 329, \"Confirmed/100k\": 0.8385743260380079}, {\"Country/Region\": \"Korea, South\", \"Days\": 3, \"Confirmed\": 498, \"Confirmed/100k\": 1.1658700791567684}, {\"Country/Region\": \"Korea, South\", \"Days\": 4, \"Confirmed\": 729, \"Confirmed/100k\": 1.6132388304611098}, {\"Country/Region\": \"Korea, South\", \"Days\": 5, \"Confirmed\": 873, \"Confirmed/100k\": 1.8921180520534264}, {\"Country/Region\": \"Korea, South\", \"Days\": 6, \"Confirmed\": 1157, \"Confirmed/100k\": 2.4421298501938287}, {\"Country/Region\": \"Korea, South\", \"Days\": 7, \"Confirmed\": 1662, \"Confirmed/100k\": 3.420143787027995}, {\"Country/Region\": \"Korea, South\", \"Days\": 8, \"Confirmed\": 2233, \"Confirmed/100k\": 4.525977367091973}, {\"Country/Region\": \"Korea, South\", \"Days\": 9, \"Confirmed\": 3046, \"Confirmed/100k\": 6.100482972331928}, {\"Country/Region\": \"Korea, South\", \"Days\": 10, \"Confirmed\": 3632, \"Confirmed/100k\": 7.235366471311772}, {\"Country/Region\": \"Korea, South\", \"Days\": 11, \"Confirmed\": 4231, \"Confirmed/100k\": 8.395426566685366}, {\"Country/Region\": \"Korea, South\", \"Days\": 12, \"Confirmed\": 5082, \"Confirmed/100k\": 10.043525299845516}, {\"Country/Region\": \"Korea, South\", \"Days\": 13, \"Confirmed\": 5517, \"Confirmed/100k\": 10.885972948405641}, {\"Country/Region\": \"Korea, South\", \"Days\": 14, \"Confirmed\": 5984, \"Confirmed/100k\": 11.790393757319613}, {\"Country/Region\": \"Korea, South\", \"Days\": 15, \"Confirmed\": 6489, \"Confirmed/100k\": 12.768407694153776}, {\"Country/Region\": \"Korea, South\", \"Days\": 16, \"Confirmed\": 6937, \"Confirmed/100k\": 13.636031939107651}, {\"Country/Region\": \"Korea, South\", \"Days\": 17, \"Confirmed\": 7210, \"Confirmed/100k\": 14.16474046337642}, {\"Country/Region\": \"Korea, South\", \"Days\": 18, \"Confirmed\": 7374, \"Confirmed/100k\": 14.48235291018989}, {\"Country/Region\": \"Korea, South\", \"Days\": 19, \"Confirmed\": 7409, \"Confirmed/100k\": 14.550136054326911}, {\"Country/Region\": \"Korea, South\", \"Days\": 20, \"Confirmed\": 7651, \"Confirmed/100k\": 15.01880807950289}, {\"Country/Region\": \"Korea, South\", \"Days\": 21, \"Confirmed\": 7765, \"Confirmed/100k\": 15.239587463263474}, {\"Country/Region\": \"Korea, South\", \"Days\": 22, \"Confirmed\": 7875, \"Confirmed/100k\": 15.452620201979823}, {\"Country/Region\": \"Korea, South\", \"Days\": 23, \"Confirmed\": 7982, \"Confirmed/100k\": 15.659842956913007}, {\"Country/Region\": \"Korea, South\", \"Days\": 24, \"Confirmed\": 8058, \"Confirmed/100k\": 15.807029212753394}, {\"Country/Region\": \"Korea, South\", \"Days\": 25, \"Confirmed\": 8132, \"Confirmed/100k\": 15.95034214607167}, {\"Country/Region\": \"Korea, South\", \"Days\": 26, \"Confirmed\": 8216, \"Confirmed/100k\": 16.11302169200052}, {\"Country/Region\": \"Korea, South\", \"Days\": 27, \"Confirmed\": 8309, \"Confirmed/100k\": 16.293131189278892}, {\"Country/Region\": \"Korea, South\", \"Days\": 28, \"Confirmed\": 8461, \"Confirmed/100k\": 16.58750370095967}, {\"Country/Region\": \"Netherlands\", \"Days\": 0, \"Confirmed\": 0, \"Confirmed/100k\": 0.7428464611229854}, {\"Country/Region\": \"Netherlands\", \"Days\": 1, \"Confirmed\": 60, \"Confirmed/100k\": 1.0910557397743847}, {\"Country/Region\": \"Netherlands\", \"Days\": 2, \"Confirmed\": 137, \"Confirmed/100k\": 1.537924314043681}, {\"Country/Region\": \"Netherlands\", \"Days\": 3, \"Confirmed\": 193, \"Confirmed/100k\": 1.8629196407849868}, {\"Country/Region\": \"Netherlands\", \"Days\": 4, \"Confirmed\": 254, \"Confirmed/100k\": 2.216932407413909}, {\"Country/Region\": \"Netherlands\", \"Days\": 5, \"Confirmed\": 375, \"Confirmed/100k\": 2.919154452694232}, {\"Country/Region\": \"Netherlands\", \"Days\": 6, \"Confirmed\": 375, \"Confirmed/100k\": 2.919154452694232}, {\"Country/Region\": \"Netherlands\", \"Days\": 7, \"Confirmed\": 678, \"Confirmed/100k\": 4.6776113098837975}, {\"Country/Region\": \"Netherlands\", \"Days\": 8, \"Confirmed\": 834, \"Confirmed/100k\": 5.582955434377436}, {\"Country/Region\": \"Netherlands\", \"Days\": 9, \"Confirmed\": 1010, \"Confirmed/100k\": 6.604369318421543}, {\"Country/Region\": \"Netherlands\", \"Days\": 10, \"Confirmed\": 1288, \"Confirmed/100k\": 8.217738976173026}, {\"Country/Region\": \"Netherlands\", \"Days\": 11, \"Confirmed\": 1583, \"Confirmed/100k\": 9.929767929542408}, {\"Country/Region\": \"Netherlands\", \"Days\": 12, \"Confirmed\": 1930, \"Confirmed/100k\": 11.943578257743}, {\"Country/Region\": \"Netherlands\", \"Days\": 13, \"Confirmed\": 2339, \"Confirmed/100k\": 14.317204840550039}, {\"Country/Region\": \"Norway\", \"Days\": 0, \"Confirmed\": 0, \"Confirmed/100k\": 2.0322388347293057}, {\"Country/Region\": \"Norway\", \"Days\": 1, \"Confirmed\": 39, \"Confirmed/100k\": 2.7661028583815552}, {\"Country/Region\": \"Norway\", \"Days\": 2, \"Confirmed\": 68, \"Confirmed/100k\": 3.3117966195588684}, {\"Country/Region\": \"Norway\", \"Days\": 3, \"Confirmed\": 97, \"Confirmed/100k\": 3.8574903807361824}, {\"Country/Region\": \"Norway\", \"Days\": 4, \"Confirmed\": 292, \"Confirmed/100k\": 7.526810498997428}, {\"Country/Region\": \"Norway\", \"Days\": 5, \"Confirmed\": 490, \"Confirmed/100k\": 11.252581696001155}, {\"Country/Region\": \"Norway\", \"Days\": 6, \"Confirmed\": 594, \"Confirmed/100k\": 13.209552425740487}, {\"Country/Region\": \"Norway\", \"Days\": 7, \"Confirmed\": 888, \"Confirmed/100k\": 18.741758142503603}, {\"Country/Region\": \"Norway\", \"Days\": 8, \"Confirmed\": 982, \"Confirmed/100k\": 20.510558609767997}, {\"Country/Region\": \"Norway\", \"Days\": 9, \"Confirmed\": 1113, \"Confirmed/100k\": 22.97558904818965}, {\"Country/Region\": \"Norway\", \"Days\": 10, \"Confirmed\": 1225, \"Confirmed/100k\": 25.08309598790893}, {\"Country/Region\": \"Norway\", \"Days\": 11, \"Confirmed\": 1355, \"Confirmed/100k\": 27.529309400083093}, {\"Country/Region\": \"Norway\", \"Days\": 12, \"Confirmed\": 1442, \"Confirmed/100k\": 29.16639068361504}, {\"Country/Region\": \"Norway\", \"Days\": 13, \"Confirmed\": 1638, \"Confirmed/100k\": 32.85452782812378}, {\"Country/Region\": \"Spain\", \"Days\": 0, \"Confirmed\": 0, \"Confirmed/100k\": 0.25682870610404146}, {\"Country/Region\": \"Spain\", \"Days\": 1, \"Confirmed\": 45, \"Confirmed/100k\": 0.353139470893057}, {\"Country/Region\": \"Spain\", \"Days\": 2, \"Confirmed\": 102, \"Confirmed/100k\": 0.4751331062924767}, {\"Country/Region\": \"Spain\", \"Days\": 3, \"Confirmed\": 139, \"Confirmed/100k\": 0.5543219573412228}, {\"Country/Region\": \"Spain\", \"Days\": 4, \"Confirmed\": 280, \"Confirmed/100k\": 0.8560956870134715}, {\"Country/Region\": \"Spain\", \"Days\": 5, \"Confirmed\": 380, \"Confirmed/100k\": 1.0701196087668394}, {\"Country/Region\": \"Spain\", \"Days\": 6, \"Confirmed\": 553, \"Confirmed/100k\": 1.4403809934001657}, {\"Country/Region\": \"Spain\", \"Days\": 7, \"Confirmed\": 953, \"Confirmed/100k\": 2.2964766804136367}, {\"Country/Region\": \"Spain\", \"Days\": 8, \"Confirmed\": 1575, \"Confirmed/100k\": 3.6277054737195855}, {\"Country/Region\": \"Spain\", \"Days\": 9, \"Confirmed\": 2157, \"Confirmed/100k\": 4.873324698324187}, {\"Country/Region\": \"Spain\", \"Days\": 10, \"Confirmed\": 2157, \"Confirmed/100k\": 4.873324698324187}, {\"Country/Region\": \"Spain\", \"Days\": 11, \"Confirmed\": 5112, \"Confirmed/100k\": 11.197731586136207}, {\"Country/Region\": \"Spain\", \"Days\": 12, \"Confirmed\": 6271, \"Confirmed/100k\": 13.678268839257742}, {\"Country/Region\": \"Spain\", \"Days\": 13, \"Confirmed\": 7678, \"Confirmed/100k\": 16.689585418327628}, {\"Country/Region\": \"Spain\", \"Days\": 14, \"Confirmed\": 9822, \"Confirmed/100k\": 21.278258300719834}, {\"Country/Region\": \"Spain\", \"Days\": 15, \"Confirmed\": 11628, \"Confirmed/100k\": 25.14353032758566}, {\"Country/Region\": \"Spain\", \"Days\": 16, \"Confirmed\": 13790, \"Confirmed/100k\": 29.770727515893466}, {\"Country/Region\": \"Spain\", \"Days\": 17, \"Confirmed\": 17843, \"Confirmed/100k\": 38.445117064557465}, {\"Country/Region\": \"Sweden\", \"Days\": 0, \"Confirmed\": 0, \"Confirmed/100k\": 0.9918321152292876}, {\"Country/Region\": \"Sweden\", \"Days\": 1, \"Confirmed\": 60, \"Confirmed/100k\": 1.581039312395201}, {\"Country/Region\": \"Sweden\", \"Days\": 2, \"Confirmed\": 102, \"Confirmed/100k\": 1.99348435041134}, {\"Country/Region\": \"Sweden\", \"Days\": 3, \"Confirmed\": 147, \"Confirmed/100k\": 2.435389748285776}, {\"Country/Region\": \"Sweden\", \"Days\": 4, \"Confirmed\": 254, \"Confirmed/100k\": 3.4861425832316537}, {\"Country/Region\": \"Sweden\", \"Days\": 5, \"Confirmed\": 399, \"Confirmed/100k\": 4.9100599763826125}, {\"Country/Region\": \"Sweden\", \"Days\": 6, \"Confirmed\": 498, \"Confirmed/100k\": 5.882251851706369}, {\"Country/Region\": \"Sweden\", \"Days\": 7, \"Confirmed\": 713, \"Confirmed/100k\": 7.993577641550892}, {\"Country/Region\": \"Sweden\", \"Days\": 8, \"Confirmed\": 860, \"Confirmed/100k\": 9.437135274607376}, {\"Country/Region\": \"Sweden\", \"Days\": 9, \"Confirmed\": 921, \"Confirmed/100k\": 10.036162591726056}, {\"Country/Region\": \"Sweden\", \"Days\": 10, \"Confirmed\": 1002, \"Confirmed/100k\": 10.831592307900042}, {\"Country/Region\": \"Sweden\", \"Days\": 11, \"Confirmed\": 1089, \"Confirmed/100k\": 11.685942743790614}, {\"Country/Region\": \"Sweden\", \"Days\": 12, \"Confirmed\": 1178, \"Confirmed/100k\": 12.559933419586716}, {\"Country/Region\": \"Sweden\", \"Days\": 13, \"Confirmed\": 1338, \"Confirmed/100k\": 14.131152612029155}, {\"Country/Region\": \"Switzerland\", \"Days\": 0, \"Confirmed\": 0, \"Confirmed/100k\": 1.3385712958884843}, {\"Country/Region\": \"Switzerland\", \"Days\": 1, \"Confirmed\": 100, \"Confirmed/100k\": 2.5127566431590846}, {\"Country/Region\": \"Switzerland\", \"Days\": 2, \"Confirmed\": 154, \"Confirmed/100k\": 3.1468167306852086}, {\"Country/Region\": \"Switzerland\", \"Days\": 3, \"Confirmed\": 223, \"Confirmed/100k\": 3.957004620301923}, {\"Country/Region\": \"Switzerland\", \"Days\": 4, \"Confirmed\": 260, \"Confirmed/100k\": 4.391453198792045}, {\"Country/Region\": \"Switzerland\", \"Days\": 5, \"Confirmed\": 377, \"Confirmed/100k\": 5.7652500550986465}, {\"Country/Region\": \"Switzerland\", \"Days\": 6, \"Confirmed\": 538, \"Confirmed/100k\": 7.655688464204314}, {\"Country/Region\": \"Switzerland\", \"Days\": 7, \"Confirmed\": 538, \"Confirmed/100k\": 7.655688464204314}, {\"Country/Region\": \"Switzerland\", \"Days\": 8, \"Confirmed\": 1025, \"Confirmed/100k\": 13.373971105412135}, {\"Country/Region\": \"Switzerland\", \"Days\": 9, \"Confirmed\": 1245, \"Confirmed/100k\": 15.957178869407455}, {\"Country/Region\": \"Switzerland\", \"Days\": 10, \"Confirmed\": 2086, \"Confirmed/100k\": 25.8320776399532}, {\"Country/Region\": \"Switzerland\", \"Days\": 11, \"Confirmed\": 2086, \"Confirmed/100k\": 25.8320776399532}, {\"Country/Region\": \"Switzerland\", \"Days\": 12, \"Confirmed\": 2586, \"Confirmed/100k\": 31.70300437630621}, {\"Country/Region\": \"Switzerland\", \"Days\": 13, \"Confirmed\": 2914, \"Confirmed/100k\": 35.554332315353776}, {\"Country/Region\": \"Switzerland\", \"Days\": 14, \"Confirmed\": 3961, \"Confirmed/100k\": 47.84805290127696}, {\"Country/Region\": \"US\", \"Days\": 0, \"Confirmed\": 0, \"Confirmed/100k\": 0.03606715942271932}, {\"Country/Region\": \"US\", \"Days\": 1, \"Confirmed\": 31, \"Confirmed/100k\": 0.04554243011851846}, {\"Country/Region\": \"US\", \"Days\": 2, \"Confirmed\": 99, \"Confirmed/100k\": 0.06632689487059401}, {\"Country/Region\": \"US\", \"Days\": 3, \"Confirmed\": 144, \"Confirmed/100k\": 0.0800813200741734}, {\"Country/Region\": \"US\", \"Days\": 4, \"Confirmed\": 284, \"Confirmed/100k\": 0.122872865151976}, {\"Country/Region\": \"US\", \"Days\": 5, \"Confirmed\": 400, \"Confirmed/100k\": 0.15832871678786953}, {\"Country/Region\": \"US\", \"Days\": 6, \"Confirmed\": 465, \"Confirmed/100k\": 0.17819621985970646}, {\"Country/Region\": \"US\", \"Days\": 7, \"Confirmed\": 841, \"Confirmed/100k\": 0.2931220837829477}, {\"Country/Region\": \"US\", \"Days\": 8, \"Confirmed\": 1163, \"Confirmed/100k\": 0.3915426374618936}, {\"Country/Region\": \"US\", \"Days\": 9, \"Confirmed\": 1545, \"Confirmed/100k\": 0.508302424745612}, {\"Country/Region\": \"US\", \"Days\": 10, \"Confirmed\": 2061, \"Confirmed/100k\": 0.6660198337466559}, {\"Country/Region\": \"US\", \"Days\": 11, \"Confirmed\": 2609, \"Confirmed/100k\": 0.8335181673369116}, {\"Country/Region\": \"US\", \"Days\": 12, \"Confirmed\": 3381, \"Confirmed/100k\": 1.0694829730516515}, {\"Country/Region\": \"US\", \"Days\": 13, \"Confirmed\": 4514, \"Confirmed/100k\": 1.4157888342884395}, {\"Country/Region\": \"US\", \"Days\": 14, \"Confirmed\": 6303, \"Confirmed/100k\": 1.962603649604074}, {\"Country/Region\": \"US\", \"Days\": 15, \"Confirmed\": 7665, \"Confirmed/100k\": 2.3789042524324104}, {\"Country/Region\": \"US\", \"Days\": 16, \"Confirmed\": 13559, \"Confirmed/100k\": 4.1804283002078995}, {\"Country/Region\": \"United Kingdom\", \"Days\": 0, \"Confirmed\": 0, \"Confirmed/100k\": 0.17446497270503022}, {\"Country/Region\": \"United Kingdom\", \"Days\": 1, \"Confirmed\": 48, \"Confirmed/100k\": 0.2466573752036634}, {\"Country/Region\": \"United Kingdom\", \"Days\": 2, \"Confirmed\": 91, \"Confirmed/100k\": 0.3113297357753557}, {\"Country/Region\": \"United Kingdom\", \"Days\": 3, \"Confirmed\": 158, \"Confirmed/100k\": 0.4120982975963645}, {\"Country/Region\": \"United Kingdom\", \"Days\": 4, \"Confirmed\": 206, \"Confirmed/100k\": 0.4842907000949977}, {\"Country/Region\": \"United Kingdom\", \"Days\": 5, \"Confirmed\": 268, \"Confirmed/100k\": 0.5775392199890655}, {\"Country/Region\": \"United Kingdom\", \"Days\": 6, \"Confirmed\": 343, \"Confirmed/100k\": 0.6903398488931799}, {\"Country/Region\": \"United Kingdom\", \"Days\": 7, \"Confirmed\": 343, \"Confirmed/100k\": 0.6903398488931799}, {\"Country/Region\": \"United Kingdom\", \"Days\": 8, \"Confirmed\": 686, \"Confirmed/100k\": 1.2062147250813295}, {\"Country/Region\": \"United Kingdom\", \"Days\": 9, \"Confirmed\": 1028, \"Confirmed/100k\": 1.7205855928840912}, {\"Country/Region\": \"United Kingdom\", \"Days\": 10, \"Confirmed\": 1029, \"Confirmed/100k\": 1.7220896012694793}, {\"Country/Region\": \"United Kingdom\", \"Days\": 11, \"Confirmed\": 1435, \"Confirmed/100k\": 2.332717005737085}, {\"Country/Region\": \"United Kingdom\", \"Days\": 12, \"Confirmed\": 1844, \"Confirmed/100k\": 2.947856435360856}, {\"Country/Region\": \"United Kingdom\", \"Days\": 13, \"Confirmed\": 2526, \"Confirmed/100k\": 3.973590154195602}, {\"Country/Region\": \"United Kingdom\", \"Days\": 14, \"Confirmed\": 2600, \"Confirmed/100k\": 4.084886774714328}]}}, {\"mode\": \"vega-lite\"});\n",
"</script>"
],
"text/plain": [
@@ -1019,23 +1019,23 @@
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
- "version": "3.7.6"
+ "version": "3.7.3"
},
"papermill": {
- "duration": 4.232121,
- "end_time": "2020-03-19T15:32:03.297324",
+ "duration": 4.468123,
+ "end_time": "2020-03-20T09:14:28.756956",
"environment_variables": {},
"exception": null,
- "input_path": "/tmp/v7bonu8b/notebooks/Dashboard.ipynb",
+ "input_path": "/tmp/zeab0m06/notebooks/Dashboard.ipynb",
"output_path": "runs/Dashboard.run.ipynb",
"parameters": {
- "PAPERMILL_INPUT_PATH": "/tmp/v7bonu8b/notebooks/Dashboard.ipynb",
+ "PAPERMILL_INPUT_PATH": "/tmp/zeab0m06/notebooks/Dashboard.ipynb",
"PAPERMILL_OUTPUT_PATH": "runs/Dashboard.run.ipynb",
- "geodata_path": "/tmp/v7bonu8b/data/geodata/geo_data.csv",
- "rates_folder": "/tmp/v7bonu8b/data/covid-19_rates",
- "ts_folder": "/tmp/v7bonu8b/data/covid-19_jhu-csse"
+ "geodata_path": "/tmp/zeab0m06/data/geodata/geo_data.csv",
+ "rates_folder": "/tmp/zeab0m06/data/covid-19_rates",
+ "ts_folder": "/tmp/zeab0m06/data/covid-19_jhu-csse"
},
- "start_time": "2020-03-19T15:31:59.065203",
+ "start_time": "2020-03-20T09:14:24.288833",
"version": "1.1.0"
}
},
diff --git a/runs/ToRates.run.ipynb b/runs/ToRates.run.ipynb
index 1f94028546cad1ec7a59eb49726420abc4a1d62d..2ab9a8b826121970d18cd31b939dd2810c444131 100644
--- a/runs/ToRates.run.ipynb
+++ b/runs/ToRates.run.ipynb
@@ -4,10 +4,10 @@
"cell_type": "markdown",
"metadata": {
"papermill": {
- "duration": 0.019248,
- "end_time": "2020-03-18T17:41:16.247818",
+ "duration": 0.019737,
+ "end_time": "2020-03-20T09:14:21.387138",
"exception": false,
- "start_time": "2020-03-18T17:41:16.228570",
+ "start_time": "2020-03-20T09:14:21.367401",
"status": "completed"
},
"tags": []
@@ -21,10 +21,10 @@
"execution_count": 1,
"metadata": {
"papermill": {
- "duration": 0.345001,
- "end_time": "2020-03-18T17:41:16.607949",
+ "duration": 0.344425,
+ "end_time": "2020-03-20T09:14:21.745752",
"exception": false,
- "start_time": "2020-03-18T17:41:16.262948",
+ "start_time": "2020-03-20T09:14:21.401327",
"status": "completed"
},
"tags": []
@@ -40,10 +40,10 @@
"execution_count": 2,
"metadata": {
"papermill": {
- "duration": 0.025568,
- "end_time": "2020-03-18T17:41:16.652301",
+ "duration": 0.028,
+ "end_time": "2020-03-20T09:14:21.793663",
"exception": false,
- "start_time": "2020-03-18T17:41:16.626733",
+ "start_time": "2020-03-20T09:14:21.765663",
"status": "completed"
},
"tags": [
@@ -64,10 +64,10 @@
"execution_count": 3,
"metadata": {
"papermill": {
- "duration": 0.02526,
- "end_time": "2020-03-18T17:41:16.692448",
+ "duration": 0.024974,
+ "end_time": "2020-03-20T09:14:21.834058",
"exception": false,
- "start_time": "2020-03-18T17:41:16.667188",
+ "start_time": "2020-03-20T09:14:21.809084",
"status": "completed"
},
"tags": [
@@ -77,22 +77,22 @@
"outputs": [],
"source": [
"# Parameters\n",
- "PAPERMILL_INPUT_PATH = \"notebooks/process/ToRates.ipynb\"\n",
+ "PAPERMILL_INPUT_PATH = \"/tmp/99ksj1h9/notebooks/process/ToRates.ipynb\"\n",
"PAPERMILL_OUTPUT_PATH = \"runs/ToRates.run.ipynb\"\n",
- "ts_folder = \"./data/covid-19_jhu-csse/\"\n",
- "wb_path = \"./data/worldbank/SP.POP.TOTL.zip\"\n",
- "geodata_path = \"./data/geodata/geo_data.csv\"\n",
- "out_folder = \"./data/covid-19_rates/\"\n"
+ "ts_folder = \"/tmp/99ksj1h9/data/covid-19_jhu-csse\"\n",
+ "wb_path = \"/tmp/99ksj1h9/data/worldbank/SP.POP.TOTL.zip\"\n",
+ "geodata_path = \"/tmp/99ksj1h9/data/geodata/geo_data.csv\"\n",
+ "out_folder = \"data/covid-19_rates\"\n"
]
},
{
"cell_type": "markdown",
"metadata": {
"papermill": {
- "duration": 0.013342,
- "end_time": "2020-03-18T17:41:16.721760",
+ "duration": 0.013897,
+ "end_time": "2020-03-20T09:14:21.861189",
"exception": false,
- "start_time": "2020-03-18T17:41:16.708418",
+ "start_time": "2020-03-20T09:14:21.847292",
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"tags": [
@@ -110,10 +110,10 @@
"execution_count": 4,
"metadata": {
"papermill": {
- "duration": 0.030827,
- "end_time": "2020-03-18T17:41:16.766227",
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+ "end_time": "2020-03-20T09:14:21.914653",
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- "start_time": "2020-03-18T17:41:16.735400",
+ "start_time": "2020-03-20T09:14:21.876950",
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@@ -135,10 +135,10 @@
"execution_count": 5,
"metadata": {
"papermill": {
- "duration": 0.169334,
- "end_time": "2020-03-18T17:41:16.952367",
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+ "end_time": "2020-03-20T09:14:22.091386",
"exception": false,
- "start_time": "2020-03-18T17:41:16.783033",
+ "start_time": "2020-03-20T09:14:21.930661",
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@@ -156,10 +156,10 @@
"cell_type": "markdown",
"metadata": {
"papermill": {
- "duration": 0.013234,
- "end_time": "2020-03-18T17:41:16.984067",
+ "duration": 0.013485,
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"exception": false,
- "start_time": "2020-03-18T17:41:16.970833",
+ "start_time": "2020-03-20T09:14:22.108426",
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@@ -173,10 +173,10 @@
"execution_count": 6,
"metadata": {
"papermill": {
- "duration": 0.042152,
- "end_time": "2020-03-18T17:41:17.039652",
+ "duration": 0.045236,
+ "end_time": "2020-03-20T09:14:22.179994",
"exception": false,
- "start_time": "2020-03-18T17:41:16.997500",
+ "start_time": "2020-03-20T09:14:22.134758",
"status": "completed"
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@@ -192,10 +192,10 @@
"cell_type": "markdown",
"metadata": {
"papermill": {
- "duration": 0.013053,
- "end_time": "2020-03-18T17:41:17.069282",
+ "duration": 0.01244,
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"exception": false,
- "start_time": "2020-03-18T17:41:17.056229",
+ "start_time": "2020-03-20T09:14:22.196432",
"status": "completed"
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@@ -209,10 +209,10 @@
"execution_count": 7,
"metadata": {
"papermill": {
- "duration": 0.067991,
- "end_time": "2020-03-18T17:41:17.150655",
+ "duration": 0.066727,
+ "end_time": "2020-03-20T09:14:22.288534",
"exception": false,
- "start_time": "2020-03-18T17:41:17.082664",
+ "start_time": "2020-03-20T09:14:22.221807",
"status": "completed"
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"tags": []
@@ -345,10 +345,10 @@
"cell_type": "markdown",
"metadata": {
"papermill": {
- "duration": 0.013804,
- "end_time": "2020-03-18T17:41:17.183019",
+ "duration": 0.017214,
+ "end_time": "2020-03-20T09:14:22.323770",
"exception": false,
- "start_time": "2020-03-18T17:41:17.169215",
+ "start_time": "2020-03-20T09:14:22.306556",
"status": "completed"
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@@ -362,10 +362,10 @@
"execution_count": 8,
"metadata": {
"papermill": {
- "duration": 0.035748,
- "end_time": "2020-03-18T17:41:17.232910",
+ "duration": 0.039771,
+ "end_time": "2020-03-20T09:14:22.376854",
"exception": false,
- "start_time": "2020-03-18T17:41:17.197162",
+ "start_time": "2020-03-20T09:14:22.337083",
"status": "completed"
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"tags": []
@@ -394,10 +394,10 @@
"execution_count": 9,
"metadata": {
"papermill": {
- "duration": 0.025899,
- "end_time": "2020-03-18T17:41:17.276983",
+ "duration": 0.030032,
+ "end_time": "2020-03-20T09:14:22.426341",
"exception": false,
- "start_time": "2020-03-18T17:41:17.251084",
+ "start_time": "2020-03-20T09:14:22.396309",
"status": "completed"
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@@ -412,10 +412,10 @@
"cell_type": "markdown",
"metadata": {
"papermill": {
- "duration": 0.014096,
- "end_time": "2020-03-18T17:41:17.304846",
+ "duration": 0.015764,
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"exception": false,
- "start_time": "2020-03-18T17:41:17.290750",
+ "start_time": "2020-03-20T09:14:22.443762",
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@@ -429,10 +429,10 @@
"execution_count": 10,
"metadata": {
"papermill": {
- "duration": 0.042745,
- "end_time": "2020-03-18T17:41:17.362191",
+ "duration": 0.046845,
+ "end_time": "2020-03-20T09:14:22.521782",
"exception": false,
- "start_time": "2020-03-18T17:41:17.319446",
+ "start_time": "2020-03-20T09:14:22.474937",
"status": "completed"
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"tags": []
@@ -461,8 +461,8 @@
" <th></th>\n",
" <th></th>\n",
" <th></th>\n",
- " <th>2020-03-16 00:00:00</th>\n",
- " <th>2020-03-17 00:00:00</th>\n",
+ " <th>2020-03-18 00:00:00</th>\n",
+ " <th>2020-03-19 00:00:00</th>\n",
" </tr>\n",
" <tr>\n",
" <th>Country/Region</th>\n",
@@ -478,28 +478,21 @@
" <th>21.7587</th>\n",
" <th>-4.0383</th>\n",
" <td>1</td>\n",
- " <td>1</td>\n",
+ " <td>3</td>\n",
" </tr>\n",
" <tr>\n",
" <th>Congo (Kinshasa)</th>\n",
" <th>21.7587</th>\n",
" <th>-4.0383</th>\n",
- " <td>2</td>\n",
- " <td>3</td>\n",
+ " <td>4</td>\n",
+ " <td>14</td>\n",
" </tr>\n",
" <tr>\n",
" <th>Cruise Ship</th>\n",
" <th>139.6380</th>\n",
" <th>35.4437</th>\n",
- " <td>696</td>\n",
- " <td>696</td>\n",
- " </tr>\n",
- " <tr>\n",
- " <th>Guernsey</th>\n",
- " <th>-2.5800</th>\n",
- " <th>49.4500</th>\n",
- " <td>1</td>\n",
- " <td>1</td>\n",
+ " <td>712</td>\n",
+ " <td>712</td>\n",
" </tr>\n",
" <tr>\n",
" <th>Holy See</th>\n",
@@ -509,25 +502,18 @@
" <td>1</td>\n",
" </tr>\n",
" <tr>\n",
- " <th>Jersey</th>\n",
- " <th>-2.1100</th>\n",
- " <th>49.1900</th>\n",
- " <td>2</td>\n",
- " <td>2</td>\n",
+ " <th>Kyrgyzstan</th>\n",
+ " <th>74.7661</th>\n",
+ " <th>41.2044</th>\n",
+ " <td>3</td>\n",
+ " <td>3</td>\n",
" </tr>\n",
" <tr>\n",
" <th>Martinique</th>\n",
" <th>-61.0242</th>\n",
" <th>14.6415</th>\n",
- " <td>15</td>\n",
- " <td>16</td>\n",
- " </tr>\n",
- " <tr>\n",
- " <th>Republic of the Congo</th>\n",
- " <th>15.5560</th>\n",
- " <th>-1.4400</th>\n",
- " <td>1</td>\n",
- " <td>1</td>\n",
+ " <td>19</td>\n",
+ " <td>23</td>\n",
" </tr>\n",
" <tr>\n",
" <th>Saint Lucia</th>\n",
@@ -547,68 +533,46 @@
" <th>Taiwan*</th>\n",
" <th>121.0000</th>\n",
" <th>23.7000</th>\n",
- " <td>67</td>\n",
- " <td>77</td>\n",
- " </tr>\n",
- " <tr>\n",
- " <th>The Bahamas</th>\n",
- " <th>-76.0000</th>\n",
- " <th>24.2500</th>\n",
- " <td>1</td>\n",
- " <td>1</td>\n",
- " </tr>\n",
- " <tr>\n",
- " <th>The Gambia</th>\n",
- " <th>-16.6000</th>\n",
- " <th>13.4667</th>\n",
- " <td>0</td>\n",
- " <td>1</td>\n",
+ " <td>100</td>\n",
+ " <td>108</td>\n",
" </tr>\n",
" <tr>\n",
" <th>Venezuela</th>\n",
" <th>-66.5897</th>\n",
" <th>6.4238</th>\n",
- " <td>17</td>\n",
- " <td>33</td>\n",
+ " <td>36</td>\n",
+ " <td>42</td>\n",
" </tr>\n",
" </tbody>\n",
"</table>\n",
"</div>"
],
"text/plain": [
- " 2020-03-16 00:00:00 \\\n",
+ " 2020-03-18 00:00:00 \\\n",
"Country/Region Long Lat \n",
"Congo (Brazzaville) 21.7587 -4.0383 1 \n",
- "Congo (Kinshasa) 21.7587 -4.0383 2 \n",
- "Cruise Ship 139.6380 35.4437 696 \n",
- "Guernsey -2.5800 49.4500 1 \n",
+ "Congo (Kinshasa) 21.7587 -4.0383 4 \n",
+ "Cruise Ship 139.6380 35.4437 712 \n",
"Holy See 12.4534 41.9029 1 \n",
- "Jersey -2.1100 49.1900 2 \n",
- "Martinique -61.0242 14.6415 15 \n",
- "Republic of the Congo 15.5560 -1.4400 1 \n",
+ "Kyrgyzstan 74.7661 41.2044 3 \n",
+ "Martinique -61.0242 14.6415 19 \n",
"Saint Lucia -60.9789 13.9094 2 \n",
"Saint Vincent and the Grenadines -61.2872 12.9843 1 \n",
- "Taiwan* 121.0000 23.7000 67 \n",
- "The Bahamas -76.0000 24.2500 1 \n",
- "The Gambia -16.6000 13.4667 0 \n",
- "Venezuela -66.5897 6.4238 17 \n",
+ "Taiwan* 121.0000 23.7000 100 \n",
+ "Venezuela -66.5897 6.4238 36 \n",
"\n",
- " 2020-03-17 00:00:00 \n",
+ " 2020-03-19 00:00:00 \n",
"Country/Region Long Lat \n",
- "Congo (Brazzaville) 21.7587 -4.0383 1 \n",
- "Congo (Kinshasa) 21.7587 -4.0383 3 \n",
- "Cruise Ship 139.6380 35.4437 696 \n",
- "Guernsey -2.5800 49.4500 1 \n",
+ "Congo (Brazzaville) 21.7587 -4.0383 3 \n",
+ "Congo (Kinshasa) 21.7587 -4.0383 14 \n",
+ "Cruise Ship 139.6380 35.4437 712 \n",
"Holy See 12.4534 41.9029 1 \n",
- "Jersey -2.1100 49.1900 2 \n",
- "Martinique -61.0242 14.6415 16 \n",
- "Republic of the Congo 15.5560 -1.4400 1 \n",
+ "Kyrgyzstan 74.7661 41.2044 3 \n",
+ "Martinique -61.0242 14.6415 23 \n",
"Saint Lucia -60.9789 13.9094 2 \n",
"Saint Vincent and the Grenadines -61.2872 12.9843 1 \n",
- "Taiwan* 121.0000 23.7000 77 \n",
- "The Bahamas -76.0000 24.2500 1 \n",
- "The Gambia -16.6000 13.4667 1 \n",
- "Venezuela -66.5897 6.4238 33 "
+ "Taiwan* 121.0000 23.7000 108 \n",
+ "Venezuela -66.5897 6.4238 42 "
]
},
"execution_count": 10,
@@ -626,10 +590,10 @@
"cell_type": "markdown",
"metadata": {
"papermill": {
- "duration": 0.014536,
- "end_time": "2020-03-18T17:41:17.393746",
+ "duration": 0.021182,
+ "end_time": "2020-03-20T09:14:22.566561",
"exception": false,
- "start_time": "2020-03-18T17:41:17.379210",
+ "start_time": "2020-03-20T09:14:22.545379",
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"tags": []
@@ -643,10 +607,10 @@
"execution_count": 11,
"metadata": {
"papermill": {
- "duration": 0.039612,
- "end_time": "2020-03-18T17:41:17.450122",
+ "duration": 0.050686,
+ "end_time": "2020-03-20T09:14:22.640332",
"exception": false,
- "start_time": "2020-03-18T17:41:17.410510",
+ "start_time": "2020-03-20T09:14:22.589646",
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@@ -660,10 +624,10 @@
"cell_type": "markdown",
"metadata": {
"papermill": {
- "duration": 0.01421,
- "end_time": "2020-03-18T17:41:17.480878",
+ "duration": 0.01352,
+ "end_time": "2020-03-20T09:14:22.673904",
"exception": false,
- "start_time": "2020-03-18T17:41:17.466668",
+ "start_time": "2020-03-20T09:14:22.660384",
"status": "completed"
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"tags": []
@@ -677,10 +641,10 @@
"execution_count": 12,
"metadata": {
"papermill": {
- "duration": 0.084227,
- "end_time": "2020-03-18T17:41:17.579746",
+ "duration": 0.060982,
+ "end_time": "2020-03-20T09:14:22.748645",
"exception": false,
- "start_time": "2020-03-18T17:41:17.495519",
+ "start_time": "2020-03-20T09:14:22.687663",
"status": "completed"
},
"tags": []
@@ -734,43 +698,17 @@
" </thead>\n",
" <tbody>\n",
" <tr>\n",
- " <th>Guernsey</th>\n",
- " <td>Guernsey</td>\n",
- " <td>Guernsey</td>\n",
- " <td>Europe</td>\n",
- " <td>Northern Europe</td>\n",
+ " <th>Kyrgyzstan</th>\n",
+ " <td>Kyrgyzstan</td>\n",
+ " <td>Kyrgyzstan</td>\n",
+ " <td>Asia</td>\n",
+ " <td>Central Asia</td>\n",
" <td>Europe & Central Asia</td>\n",
- " <td>68633</td>\n",
- " <td>2742.0</td>\n",
- " <td>2. High income: nonOECD</td>\n",
- " <td>-2.572391</td>\n",
- " <td>49.468098</td>\n",
- " </tr>\n",
- " <tr>\n",
- " <th>The Gambia</th>\n",
- " <td>Gambia</td>\n",
- " <td>The Gambia</td>\n",
- " <td>Africa</td>\n",
- " <td>Western Africa</td>\n",
- " <td>Sub-Saharan Africa</td>\n",
- " <td>1782893</td>\n",
- " <td>2272.0</td>\n",
+ " <td>5431747</td>\n",
+ " <td>11610.0</td>\n",
" <td>5. Low income</td>\n",
- " <td>-15.396013</td>\n",
- " <td>13.449652</td>\n",
- " </tr>\n",
- " <tr>\n",
- " <th>Jersey</th>\n",
- " <td>Jersey</td>\n",
- " <td>Jersey</td>\n",
- " <td>Europe</td>\n",
- " <td>Northern Europe</td>\n",
- " <td>Europe & Central Asia</td>\n",
- " <td>91626</td>\n",
- " <td>5100.0</td>\n",
- " <td>2. High income: nonOECD</td>\n",
- " <td>-2.126899</td>\n",
- " <td>49.218374</td>\n",
+ " <td>74.541655</td>\n",
+ " <td>41.462219</td>\n",
" </tr>\n",
" <tr>\n",
" <th>Saint Lucia</th>\n",
@@ -831,9 +769,7 @@
"text/plain": [
" name \\\n",
"name_jhu \n",
- "Guernsey Guernsey \n",
- "The Gambia Gambia \n",
- "Jersey Jersey \n",
+ "Kyrgyzstan Kyrgyzstan \n",
"Saint Lucia Saint Lucia \n",
"Taiwan* Taiwan \n",
"Saint Vincent and the Grenadines St. Vin. and Gren. \n",
@@ -841,29 +777,23 @@
"\n",
" name_long region_un \\\n",
"name_jhu \n",
- "Guernsey Guernsey Europe \n",
- "The Gambia The Gambia Africa \n",
- "Jersey Jersey Europe \n",
+ "Kyrgyzstan Kyrgyzstan Asia \n",
"Saint Lucia Saint Lucia Americas \n",
"Taiwan* Taiwan Asia \n",
"Saint Vincent and the Grenadines Saint Vincent and the Grenadines Americas \n",
"Venezuela Venezuela Americas \n",
"\n",
- " subregion region_wb \\\n",
- "name_jhu \n",
- "Guernsey Northern Europe Europe & Central Asia \n",
- "The Gambia Western Africa Sub-Saharan Africa \n",
- "Jersey Northern Europe Europe & Central Asia \n",
- "Saint Lucia Caribbean Latin America & Caribbean \n",
- "Taiwan* Eastern Asia East Asia & Pacific \n",
- "Saint Vincent and the Grenadines Caribbean Latin America & Caribbean \n",
- "Venezuela South America Latin America & Caribbean \n",
+ " subregion region_wb \\\n",
+ "name_jhu \n",
+ "Kyrgyzstan Central Asia Europe & Central Asia \n",
+ "Saint Lucia Caribbean Latin America & Caribbean \n",
+ "Taiwan* Eastern Asia East Asia & Pacific \n",
+ "Saint Vincent and the Grenadines Caribbean Latin America & Caribbean \n",
+ "Venezuela South America Latin America & Caribbean \n",
"\n",
" pop_est gdp_md_est \\\n",
"name_jhu \n",
- "Guernsey 68633 2742.0 \n",
- "The Gambia 1782893 2272.0 \n",
- "Jersey 91626 5100.0 \n",
+ "Kyrgyzstan 5431747 11610.0 \n",
"Saint Lucia 160267 1778.0 \n",
"Taiwan* 22974347 712000.0 \n",
"Saint Vincent and the Grenadines 104574 1070.0 \n",
@@ -871,9 +801,7 @@
"\n",
" income_grp Longitude \\\n",
"name_jhu \n",
- "Guernsey 2. High income: nonOECD -2.572391 \n",
- "The Gambia 5. Low income -15.396013 \n",
- "Jersey 2. High income: nonOECD -2.126899 \n",
+ "Kyrgyzstan 5. Low income 74.541655 \n",
"Saint Lucia 3. Upper middle income -60.969699 \n",
"Taiwan* 2. High income: nonOECD 120.954273 \n",
"Saint Vincent and the Grenadines 3. Upper middle income -61.201297 \n",
@@ -881,9 +809,7 @@
"\n",
" Latitude \n",
"name_jhu \n",
- "Guernsey 49.468098 \n",
- "The Gambia 13.449652 \n",
- "Jersey 49.218374 \n",
+ "Kyrgyzstan 41.462219 \n",
"Saint Lucia 13.894795 \n",
"Taiwan* 23.753993 \n",
"Saint Vincent and the Grenadines 13.224723 \n",
@@ -908,10 +834,10 @@
"cell_type": "markdown",
"metadata": {
"papermill": {
- "duration": 0.015412,
- "end_time": "2020-03-18T17:41:17.614936",
+ "duration": 0.013999,
+ "end_time": "2020-03-20T09:14:22.779092",
"exception": false,
- "start_time": "2020-03-18T17:41:17.599524",
+ "start_time": "2020-03-20T09:14:22.765093",
"status": "completed"
},
"tags": []
@@ -925,10 +851,10 @@
"execution_count": 13,
"metadata": {
"papermill": {
- "duration": 0.046955,
- "end_time": "2020-03-18T17:41:17.678221",
+ "duration": 0.043702,
+ "end_time": "2020-03-20T09:14:22.837331",
"exception": false,
- "start_time": "2020-03-18T17:41:17.631266",
+ "start_time": "2020-03-20T09:14:22.793629",
"status": "completed"
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@@ -953,10 +879,10 @@
"execution_count": 14,
"metadata": {
"papermill": {
- "duration": 0.074084,
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"exception": false,
- "start_time": "2020-03-18T17:41:17.697983",
+ "start_time": "2020-03-20T09:14:22.856265",
"status": "completed"
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"tags": []
@@ -986,24 +912,24 @@
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
- "version": "3.7.6"
+ "version": "3.7.3"
},
"papermill": {
- "duration": 2.764452,
- "end_time": "2020-03-18T17:41:18.108751",
+ "duration": 2.769685,
+ "end_time": "2020-03-20T09:14:23.270979",
"environment_variables": {},
"exception": null,
- "input_path": "notebooks/process/ToRates.ipynb",
+ "input_path": "/tmp/99ksj1h9/notebooks/process/ToRates.ipynb",
"output_path": "runs/ToRates.run.ipynb",
"parameters": {
- "PAPERMILL_INPUT_PATH": "notebooks/process/ToRates.ipynb",
+ "PAPERMILL_INPUT_PATH": "/tmp/99ksj1h9/notebooks/process/ToRates.ipynb",
"PAPERMILL_OUTPUT_PATH": "runs/ToRates.run.ipynb",
- "geodata_path": "./data/geodata/geo_data.csv",
- "out_folder": "./data/covid-19_rates/",
- "ts_folder": "./data/covid-19_jhu-csse/",
- "wb_path": "./data/worldbank/SP.POP.TOTL.zip"
+ "geodata_path": "/tmp/99ksj1h9/data/geodata/geo_data.csv",
+ "out_folder": "data/covid-19_rates",
+ "ts_folder": "/tmp/99ksj1h9/data/covid-19_jhu-csse",
+ "wb_path": "/tmp/99ksj1h9/data/worldbank/SP.POP.TOTL.zip"
},
- "start_time": "2020-03-18T17:41:15.344299",
+ "start_time": "2020-03-20T09:14:20.501294",
"version": "1.1.0"
}
},