From 4fd1997c2e52fd6d8da1b32e8b1254ede2c072c6 Mon Sep 17 00:00:00 2001
From: Chandrasekhar Ramakrishnan <cramakri@ethz.ch>
Date: Fri, 13 Mar 2020 17:58:09 +0000
Subject: [PATCH] renku update --with-siblings
---
.../529e3b9f6140470ab818a888d405c983.cwl | 108 ++++++
.../ts_rates_19-covid-confirmed.csv | 4 +-
.../ts_rates_19-covid-deaths.csv | 4 +-
.../ts_rates_19-covid-recovered.csv | 4 +-
runs/Dashboard.run.ipynb | 136 +++----
runs/ToRates.run.ipynb | 346 ++++++++----------
6 files changed, 343 insertions(+), 259 deletions(-)
create mode 100644 .renku/workflow/529e3b9f6140470ab818a888d405c983.cwl
diff --git a/.renku/workflow/529e3b9f6140470ab818a888d405c983.cwl b/.renku/workflow/529e3b9f6140470ab818a888d405c983.cwl
new file mode 100644
index 00000000..74c75316
--- /dev/null
+++ b/.renku/workflow/529e3b9f6140470ab818a888d405c983.cwl
@@ -0,0 +1,108 @@
+class: Workflow
+cwlVersion: v1.0
+hints: []
+inputs:
+ input_1:
+ default: ts_folder
+ streamable: false
+ type: string
+ input_10:
+ default: out_folder
+ streamable: false
+ type: string
+ input_11:
+ default: data/covid-19_rates
+ streamable: false
+ type: string
+ input_12:
+ default:
+ class: File
+ path: ../../notebooks/ToRates.ipynb
+ streamable: false
+ type: File
+ input_13:
+ default: runs/ToRates.run.ipynb
+ streamable: false
+ type: string
+ input_2:
+ default:
+ class: Directory
+ listing: []
+ path: ../../data/covid-19_jhu-csse
+ streamable: false
+ type: Directory
+ input_3:
+ default: rates_folder
+ streamable: false
+ type: string
+ input_4:
+ default:
+ class: File
+ path: ../../notebooks/Dashboard.ipynb
+ streamable: false
+ type: File
+ input_5:
+ default: runs/Dashboard.run.ipynb
+ streamable: false
+ type: string
+ input_6:
+ default: ts_folder
+ streamable: false
+ type: string
+ input_7:
+ default:
+ class: Directory
+ listing: []
+ path: ../../data/covid-19_jhu-csse
+ streamable: false
+ type: Directory
+ input_8:
+ default: wb_path
+ streamable: false
+ type: string
+ input_9:
+ default:
+ class: File
+ path: ../../data/worldbank/SP.POP.TOTL.zip
+ streamable: false
+ type: File
+outputs:
+ output_0:
+ outputSource: step_2/output_0
+ streamable: false
+ type: File
+ output_1:
+ outputSource: step_1/output_0
+ streamable: false
+ type: File
+ output_2:
+ outputSource: step_2/output_1
+ streamable: false
+ type: Directory
+requirements: []
+steps:
+ step_1:
+ in:
+ input_1: input_1
+ input_2: input_2
+ input_3: input_3
+ input_4: step_2/output_1
+ input_5: input_4
+ input_6: input_5
+ out:
+ - output_0
+ run: b1c0a33b463d406a820ff0a61fb3a526_papermill.cwl
+ step_2:
+ in:
+ input_1: input_6
+ input_2: input_7
+ input_3: input_8
+ input_4: input_9
+ input_5: input_10
+ input_6: input_11
+ input_7: input_12
+ input_8: input_13
+ out:
+ - output_0
+ - output_1
+ run: a38f8d703e0c4c55a2e3f49bbf15466e_papermill.cwl
diff --git a/data/covid-19_rates/ts_rates_19-covid-confirmed.csv b/data/covid-19_rates/ts_rates_19-covid-confirmed.csv
index 68469b73..41904d5c 100644
--- a/data/covid-19_rates/ts_rates_19-covid-confirmed.csv
+++ b/data/covid-19_rates/ts_rates_19-covid-confirmed.csv
@@ -1,3 +1,3 @@
version https://git-lfs.github.com/spec/v1
-oid sha256:953941d2e4414e15f0e840d13c806b56d0cfda23f402d2d8daf840ef9e6ba666
-size 55521
+oid sha256:8db5a5e65fa9c9cdc76ee4e1a665d74972a0c85d0b4de74aacf7426d1337dc38
+size 52089
diff --git a/data/covid-19_rates/ts_rates_19-covid-deaths.csv b/data/covid-19_rates/ts_rates_19-covid-deaths.csv
index 927fd93f..75a97a02 100644
--- a/data/covid-19_rates/ts_rates_19-covid-deaths.csv
+++ b/data/covid-19_rates/ts_rates_19-covid-deaths.csv
@@ -1,3 +1,3 @@
version https://git-lfs.github.com/spec/v1
-oid sha256:1d07625575b61e275be3ba1b85e04dc96984df348680d2c3f5866a4443144138
-size 28842
+oid sha256:6151848c812f7e97885da2cf7bd8f506ef862f9e46183e4849147d8471924577
+size 26971
diff --git a/data/covid-19_rates/ts_rates_19-covid-recovered.csv b/data/covid-19_rates/ts_rates_19-covid-recovered.csv
index c35fa7b0..3050ac8b 100644
--- a/data/covid-19_rates/ts_rates_19-covid-recovered.csv
+++ b/data/covid-19_rates/ts_rates_19-covid-recovered.csv
@@ -1,3 +1,3 @@
version https://git-lfs.github.com/spec/v1
-oid sha256:eae1d5842d547e04eec2706bb61a5f5c019f244150dbab899c675ad67f166524
-size 38957
+oid sha256:bb9740f1a3a3f0edb8466d11cca258d5b757b6f2638db80c9a53173607306549
+size 35550
diff --git a/runs/Dashboard.run.ipynb b/runs/Dashboard.run.ipynb
index 8ee68b5d..190e010a 100644
--- a/runs/Dashboard.run.ipynb
+++ b/runs/Dashboard.run.ipynb
@@ -5,10 +5,10 @@
"execution_count": 1,
"metadata": {
"papermill": {
- "duration": 0.35409,
- "end_time": "2020-03-13T17:04:15.061697",
+ "duration": 0.318369,
+ "end_time": "2020-03-13T17:58:07.699048",
"exception": false,
- "start_time": "2020-03-13T17:04:14.707607",
+ "start_time": "2020-03-13T17:58:07.380679",
"status": "completed"
},
"tags": []
@@ -25,10 +25,10 @@
"execution_count": 2,
"metadata": {
"papermill": {
- "duration": 0.02437,
- "end_time": "2020-03-13T17:04:15.106586",
+ "duration": 0.02116,
+ "end_time": "2020-03-13T17:58:07.739632",
"exception": false,
- "start_time": "2020-03-13T17:04:15.082216",
+ "start_time": "2020-03-13T17:58:07.718472",
"status": "completed"
},
"tags": [
@@ -48,10 +48,10 @@
"execution_count": 3,
"metadata": {
"papermill": {
- "duration": 0.022646,
- "end_time": "2020-03-13T17:04:15.137496",
+ "duration": 0.021777,
+ "end_time": "2020-03-13T17:58:07.771101",
"exception": false,
- "start_time": "2020-03-13T17:04:15.114850",
+ "start_time": "2020-03-13T17:58:07.749324",
"status": "completed"
},
"tags": [
@@ -61,10 +61,10 @@
"outputs": [],
"source": [
"# Parameters\n",
- "PAPERMILL_INPUT_PATH = \"notebooks/Dashboard.ipynb\"\n",
+ "PAPERMILL_INPUT_PATH = \"/tmp/ajs106te/notebooks/Dashboard.ipynb\"\n",
"PAPERMILL_OUTPUT_PATH = \"runs/Dashboard.run.ipynb\"\n",
- "ts_folder = \"./data/covid-19_jhu-csse/\"\n",
- "rates_folder = \"./data/covid-19_rates/\"\n"
+ "ts_folder = \"/tmp/ajs106te/data/covid-19_jhu-csse\"\n",
+ "rates_folder = \"/tmp/ajs106te/data/covid-19_rates\"\n"
]
},
{
@@ -72,10 +72,10 @@
"execution_count": 4,
"metadata": {
"papermill": {
- "duration": 0.021072,
- "end_time": "2020-03-13T17:04:15.168525",
+ "duration": 0.020625,
+ "end_time": "2020-03-13T17:58:07.801350",
"exception": false,
- "start_time": "2020-03-13T17:04:15.147453",
+ "start_time": "2020-03-13T17:58:07.780725",
"status": "completed"
},
"tags": []
@@ -90,10 +90,10 @@
"execution_count": 5,
"metadata": {
"papermill": {
- "duration": 0.065756,
- "end_time": "2020-03-13T17:04:15.243131",
+ "duration": 0.088499,
+ "end_time": "2020-03-13T17:58:07.900202",
"exception": false,
- "start_time": "2020-03-13T17:04:15.177375",
+ "start_time": "2020-03-13T17:58:07.811703",
"status": "completed"
},
"tags": []
@@ -120,10 +120,10 @@
"execution_count": 6,
"metadata": {
"papermill": {
- "duration": 0.038039,
- "end_time": "2020-03-13T17:04:15.289236",
+ "duration": 0.046747,
+ "end_time": "2020-03-13T17:58:07.960957",
"exception": false,
- "start_time": "2020-03-13T17:04:15.251197",
+ "start_time": "2020-03-13T17:58:07.914210",
"status": "completed"
},
"tags": []
@@ -150,10 +150,10 @@
"execution_count": 7,
"metadata": {
"papermill": {
- "duration": 0.017688,
- "end_time": "2020-03-13T17:04:15.314301",
+ "duration": 0.019568,
+ "end_time": "2020-03-13T17:58:07.999627",
"exception": false,
- "start_time": "2020-03-13T17:04:15.296613",
+ "start_time": "2020-03-13T17:58:07.980059",
"status": "completed"
},
"tags": []
@@ -168,10 +168,10 @@
"execution_count": 8,
"metadata": {
"papermill": {
- "duration": 0.040604,
- "end_time": "2020-03-13T17:04:15.374996",
+ "duration": 0.03619,
+ "end_time": "2020-03-13T17:58:08.046674",
"exception": false,
- "start_time": "2020-03-13T17:04:15.334392",
+ "start_time": "2020-03-13T17:58:08.010484",
"status": "completed"
},
"tags": []
@@ -188,10 +188,10 @@
"execution_count": 9,
"metadata": {
"papermill": {
- "duration": 0.034326,
- "end_time": "2020-03-13T17:04:15.424734",
+ "duration": 0.036248,
+ "end_time": "2020-03-13T17:58:08.099308",
"exception": false,
- "start_time": "2020-03-13T17:04:15.390408",
+ "start_time": "2020-03-13T17:58:08.063060",
"status": "completed"
},
"tags": []
@@ -207,10 +207,10 @@
"cell_type": "markdown",
"metadata": {
"papermill": {
- "duration": 0.009134,
- "end_time": "2020-03-13T17:04:15.448316",
+ "duration": 0.009486,
+ "end_time": "2020-03-13T17:58:08.127085",
"exception": false,
- "start_time": "2020-03-13T17:04:15.439182",
+ "start_time": "2020-03-13T17:58:08.117599",
"status": "completed"
},
"tags": []
@@ -226,10 +226,10 @@
"execution_count": 10,
"metadata": {
"papermill": {
- "duration": 0.041449,
- "end_time": "2020-03-13T17:04:15.498158",
+ "duration": 0.043858,
+ "end_time": "2020-03-13T17:58:08.178940",
"exception": false,
- "start_time": "2020-03-13T17:04:15.456709",
+ "start_time": "2020-03-13T17:58:08.135082",
"status": "completed"
},
"tags": []
@@ -238,7 +238,7 @@
{
"data": {
"text/html": [
- "<em>Data up to Mar 10 2020</em>"
+ "<em>Data up to Mar 12 2020</em>"
],
"text/plain": [
"<IPython.core.display.HTML object>"
@@ -257,10 +257,10 @@
"cell_type": "markdown",
"metadata": {
"papermill": {
- "duration": 0.009938,
- "end_time": "2020-03-13T17:04:15.526404",
+ "duration": 0.009732,
+ "end_time": "2020-03-13T17:58:08.205403",
"exception": false,
- "start_time": "2020-03-13T17:04:15.516466",
+ "start_time": "2020-03-13T17:58:08.195671",
"status": "completed"
},
"tags": []
@@ -274,10 +274,10 @@
"execution_count": 11,
"metadata": {
"papermill": {
- "duration": 0.199352,
- "end_time": "2020-03-13T17:04:15.733984",
+ "duration": 0.215996,
+ "end_time": "2020-03-13T17:58:08.429475",
"exception": false,
- "start_time": "2020-03-13T17:04:15.534632",
+ "start_time": "2020-03-13T17:58:08.213479",
"status": "completed"
},
"tags": []
@@ -293,10 +293,10 @@
"execution_count": 12,
"metadata": {
"papermill": {
- "duration": 0.045428,
- "end_time": "2020-03-13T17:04:15.799713",
+ "duration": 0.040087,
+ "end_time": "2020-03-13T17:58:08.490379",
"exception": false,
- "start_time": "2020-03-13T17:04:15.754285",
+ "start_time": "2020-03-13T17:58:08.450292",
"status": "completed"
},
"tags": []
@@ -320,10 +320,10 @@
"execution_count": 13,
"metadata": {
"papermill": {
- "duration": 0.030132,
- "end_time": "2020-03-13T17:04:15.844929",
+ "duration": 0.034884,
+ "end_time": "2020-03-13T17:58:08.543325",
"exception": false,
- "start_time": "2020-03-13T17:04:15.814797",
+ "start_time": "2020-03-13T17:58:08.508441",
"status": "completed"
},
"tags": []
@@ -362,10 +362,10 @@
"execution_count": 14,
"metadata": {
"papermill": {
- "duration": 0.100208,
- "end_time": "2020-03-13T17:04:15.958509",
+ "duration": 0.103115,
+ "end_time": "2020-03-13T17:58:08.660915",
"exception": false,
- "start_time": "2020-03-13T17:04:15.858301",
+ "start_time": "2020-03-13T17:58:08.557800",
"status": "completed"
},
"tags": []
@@ -375,10 +375,10 @@
"data": {
"text/html": [
"\n",
- "<div id=\"altair-viz-b79eb79d0e8f4b50be1688903bb8f9f0\"></div>\n",
+ "<div id=\"altair-viz-9d8bbc6305e34585bef05d17e261d227\"></div>\n",
"<script type=\"text/javascript\">\n",
" (function(spec, embedOpt){\n",
- " const outputDiv = document.getElementById(\"altair-viz-b79eb79d0e8f4b50be1688903bb8f9f0\");\n",
+ " const outputDiv = document.getElementById(\"altair-viz-9d8bbc6305e34585bef05d17e261d227\");\n",
" const paths = {\n",
" \"vega\": \"https://cdn.jsdelivr.net/npm//vega@5?noext\",\n",
" \"vega-lib\": \"https://cdn.jsdelivr.net/npm//vega-lib?noext\",\n",
@@ -419,7 +419,7 @@
" .catch(showError)\n",
" .then(() => displayChart(vegaEmbed));\n",
" }\n",
- " })({\"config\": {\"view\": {\"continuousWidth\": 400, \"continuousHeight\": 300, \"stroke\": null}}, \"layer\": [{\"data\": {\"sphere\": true}, \"mark\": {\"type\": \"geoshape\", \"fill\": \"#cae6ef\"}}, {\"data\": {\"graticule\": true}, \"mark\": {\"type\": \"geoshape\", \"stroke\": \"white\", \"strokeWidth\": 0.5}}, {\"data\": {\"url\": \"https://vega.github.io/vega-datasets/data/world-110m.json\", \"format\": {\"feature\": \"countries\", \"type\": \"topojson\"}}, \"mark\": {\"type\": \"geoshape\", \"fill\": \"#dddddd\", \"stroke\": \"#aaaaaa\"}}, {\"data\": {\"name\": \"data-433f706ddfa6221156e78c265aebad1f\"}, \"mark\": {\"type\": \"circle\", \"opacity\": 0.6}, \"encoding\": {\"color\": {\"value\": \"steelblue\"}, \"latitude\": {\"field\": \"Lat\", \"type\": \"quantitative\"}, \"longitude\": {\"field\": \"Long\", \"type\": \"quantitative\"}, \"size\": {\"type\": \"quantitative\", \"field\": \"Confirmed\", \"title\": \"Cases\"}, \"tooltip\": [{\"type\": \"nominal\", \"field\": \"Country/Region\"}, {\"type\": \"quantitative\", \"field\": \"Confirmed\"}, {\"type\": \"quantitative\", \"field\": \"Deaths\"}, {\"type\": \"quantitative\", \"field\": \"Recovered\"}]}}], \"height\": 400, \"projection\": {\"type\": \"naturalEarth1\"}, \"title\": \"Confirmed cases per 100,000\", \"width\": 600, \"$schema\": \"https://vega.github.io/schema/vega-lite/v4.0.2.json\", \"datasets\": {\"data-433f706ddfa6221156e78c265aebad1f\": [{\"Country/Region\": \"Australia\", \"Confirmed\": 0.4281306826095598, \"Deaths\": 0.012003663998398872, \"Recovered\": 0.0840256479887921, \"Lat\": -23.1315375, \"Long\": 140.0609875}, {\"Country/Region\": \"Austria\", \"Confirmed\": 2.057185925638154, \"Deaths\": 0.0, \"Recovered\": 0.04521287748655284, \"Lat\": 47.5162, \"Long\": 14.5501}, {\"Country/Region\": \"Bahrain\", \"Confirmed\": 7.00887387149166, \"Deaths\": 0.0, \"Recovered\": 1.4017747742983322, \"Lat\": 26.0275, \"Long\": 50.55}, {\"Country/Region\": \"Belgium\", \"Confirmed\": 2.3375802000128174, \"Deaths\": 0.0, \"Recovered\": 0.008754982022519914, \"Lat\": 50.8333, \"Long\": 4.0}, {\"Country/Region\": \"Denmark\", \"Confirmed\": 4.519231399481772, \"Deaths\": 0.0, \"Recovered\": 0.01724897480718234, \"Lat\": 56.2639, \"Long\": 9.5018}, {\"Country/Region\": \"France\", \"Confirmed\": 2.663193607427707, \"Deaths\": 0.04926311045129727, \"Recovered\": 0.017913858345926282, \"Lat\": 47.0, \"Long\": 2.0}, {\"Country/Region\": \"Germany\", \"Confirmed\": 1.7569474368355689, \"Deaths\": 0.0024117329263357162, \"Recovered\": 0.021705596337021446, \"Lat\": 51.0, \"Long\": 9.0}, {\"Country/Region\": \"Hong Kong SAR\", \"Confirmed\": 1.61052207757348, \"Deaths\": 0.040263051939337005, \"Recovered\": 0.8723661253523016, \"Lat\": 22.3, \"Long\": 114.2}, {\"Country/Region\": \"Iran (Islamic Republic of)\", \"Confirmed\": 9.831263513326588, \"Deaths\": 0.3557445514023921, \"Recovered\": 3.3386198277660917, \"Lat\": 32.0, \"Long\": 53.0}, {\"Country/Region\": \"Italy\", \"Confirmed\": 16.794281862259982, \"Deaths\": 1.0441611838689575, \"Recovered\": 1.198054987513669, \"Lat\": 43.0, \"Long\": 12.0}, {\"Country/Region\": \"Japan\", \"Confirmed\": 0.4591829073311989, \"Deaths\": 0.007903320263876057, \"Recovered\": 0.07982353466514817, \"Lat\": 36.0, \"Long\": 138.0}, {\"Country/Region\": \"Mainland China\", \"Confirmed\": 5.798467757569664, \"Deaths\": 0.2251692718617392, \"Recovered\": 4.315696509732684, \"Lat\": 33.40693612903227, \"Long\": 111.54290322580646}, {\"Country/Region\": \"Malaysia\", \"Confirmed\": 0.4091525198482584, \"Deaths\": 0.0, \"Recovered\": 0.07612139904153642, \"Lat\": 2.5, \"Long\": 112.5}, {\"Country/Region\": \"Netherlands\", \"Confirmed\": 2.216932407413909, \"Deaths\": 0.02321395191009329, \"Recovered\": 0.0, \"Lat\": 52.1326, \"Long\": 5.2913}, {\"Country/Region\": \"Norway\", \"Confirmed\": 7.526810498997428, \"Deaths\": 0.0, \"Recovered\": 0.018817026247493568, \"Lat\": 60.472, \"Long\": 8.4689}, {\"Country/Region\": 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@@ -460,10 +460,10 @@
"execution_count": 15,
"metadata": {
"papermill": {
- "duration": 0.062654,
- "end_time": "2020-03-13T17:04:16.037936",
+ "duration": 0.048886,
+ "end_time": "2020-03-13T17:58:08.727920",
"exception": false,
- "start_time": "2020-03-13T17:04:15.975282",
+ "start_time": "2020-03-13T17:58:08.679034",
"status": "completed"
},
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@@ -473,10 +473,10 @@
"data": {
"text/html": [
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- "<div id=\"altair-viz-a0d74fce564e44529149f3e190cf879e\"></div>\n",
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+ " })({\"config\": {\"view\": {\"continuousWidth\": 400, \"continuousHeight\": 300}}, \"layer\": [{\"mark\": \"bar\", \"encoding\": {\"x\": {\"type\": \"quantitative\", \"field\": \"Confirmed\"}, \"y\": {\"type\": \"nominal\", \"field\": \"Country/Region\", \"sort\": \"-x\"}}}, {\"mark\": {\"type\": \"text\", \"align\": \"left\", \"baseline\": \"middle\", \"dx\": 3}, \"encoding\": {\"text\": {\"type\": \"quantitative\", \"field\": \"Confirmed\", \"format\": \".3\"}, \"x\": {\"type\": \"quantitative\", \"field\": \"Confirmed\"}, \"y\": {\"type\": \"nominal\", \"field\": \"Country/Region\", \"sort\": \"-x\"}}}], \"data\": {\"name\": \"data-af06d21f07e2679aa76ca6a14f5f1418\"}, \"height\": 900, \"$schema\": \"https://vega.github.io/schema/vega-lite/v4.0.2.json\", \"datasets\": {\"data-af06d21f07e2679aa76ca6a14f5f1418\": [{\"Country/Region\": \"Australia\", \"Confirmed\": 0.5121563305983519, \"Deaths\": 0.012003663998398872, \"Recovered\": 0.0840256479887921, \"Lat\": -23.1315375, \"Long\": 140.0609875}, {\"Country/Region\": \"Austria\", \"Confirmed\": 3.4135722502347403, \"Deaths\": 0.01130321937163821, \"Recovered\": 0.04521287748655284, \"Lat\": 47.5162, \"Long\": 14.5501}, {\"Country/Region\": \"Bahrain\", \"Confirmed\": 12.424821863098854, \"Deaths\": 0.0, \"Recovered\": 2.230096231838256, \"Lat\": 26.0275, \"Long\": 50.55}, {\"Country/Region\": \"Belgium\", \"Confirmed\": 2.749064355071253, \"Deaths\": 0.026264946067559743, \"Recovered\": 0.008754982022519914, \"Lat\": 50.8333, \"Long\": 4.0}, {\"Country/Region\": \"Canada\", \"Confirmed\": 0.3157140090886777, \"Deaths\": 0.002698410334091263, \"Recovered\": 0.021587282672730104, \"Lat\": 50.795, \"Long\": -93.00628}, {\"Country/Region\": \"Denmark\", \"Confirmed\": 10.6426174560315, \"Deaths\": 0.0, \"Recovered\": 0.01724897480718234, \"Lat\": 59.07825, \"Long\": 1.2949999999999995}, {\"Country/Region\": \"France\", \"Confirmed\": 3.4096043718413016, \"Deaths\": 0.07165543338370511, \"Recovered\": 0.017913858345926282, \"Lat\": 27.399466666666665, \"Long\": -41.22323333333333}, {\"Country/Region\": \"Germany\", \"Confirmed\": 2.5057905104628087, \"Deaths\": 0.0036175993895035743, \"Recovered\": 0.03014666157919645, \"Lat\": 51.0, \"Long\": 9.0}, {\"Country/Region\": \"Iceland\", \"Confirmed\": 29.13110126875845, \"Deaths\": 0.0, \"Recovered\": 0.28282622591027623, \"Lat\": 64.9631, \"Long\": -19.0208}, {\"Country/Region\": \"Israel\", \"Confirmed\": 1.4745942051824668, \"Deaths\": 0.0, \"Recovered\": 0.045025777257479915, \"Lat\": 31.0, \"Long\": 35.0}, {\"Country/Region\": \"Italy\", \"Confirmed\": 20.62176968839136, \"Deaths\": 1.368496511980393, \"Recovered\": 1.7292368259002542, \"Lat\": 43.0, \"Long\": 12.0}, {\"Country/Region\": \"Japan\", \"Confirmed\": 0.5050221648616801, \"Deaths\": 0.012645312422201693, \"Recovered\": 0.09325917911373748, \"Lat\": 36.0, \"Long\": 138.0}, {\"Country/Region\": \"Malaysia\", \"Confirmed\": 0.4725870190495387, \"Deaths\": 0.0, \"Recovered\": 0.08246484896166446, \"Lat\": 2.5, \"Long\": 112.5}, {\"Country/Region\": \"Netherlands\", \"Confirmed\": 2.919154452694232, \"Deaths\": 0.02901743988761661, \"Recovered\": 0.0, \"Lat\": 52.1326, \"Long\": 5.2913}, {\"Country/Region\": \"Norway\", \"Confirmed\": 13.209552425740487, \"Deaths\": 0.0, \"Recovered\": 0.018817026247493568, \"Lat\": 60.472, \"Long\": 8.4689}, {\"Country/Region\": \"Qatar\", \"Confirmed\": 9.418778672002537, \"Deaths\": 0.0, \"Recovered\": 0.0, \"Lat\": 25.3548, \"Long\": 51.1839}, {\"Country/Region\": \"Singapore\", \"Confirmed\": 3.156769426014192, \"Deaths\": 0.0, \"Recovered\": 1.7025273308840587, \"Lat\": 1.2833, \"Long\": 103.8333}, {\"Country/Region\": \"Spain\", \"Confirmed\": 4.873324698324187, \"Deaths\": 0.11771315696435232, \"Recovered\": 0.3916637768086632, \"Lat\": 40.0, \"Long\": -4.0}, {\"Country/Region\": \"Sweden\", \"Confirmed\": 5.882251851706369, \"Deaths\": 0.009820119952765223, \"Recovered\": 0.009820119952765223, \"Lat\": 63.0, \"Long\": 16.0}, {\"Country/Region\": \"Switzerland\", \"Confirmed\": 7.655688464204314, \"Deaths\": 0.04696741389082401, \"Recovered\": 0.04696741389082401, \"Lat\": 46.8182, \"Long\": 8.2275}, {\"Country/Region\": \"US\", \"Confirmed\": 0.508302424745612, \"Deaths\": 0.012226155736515023, \"Recovered\": 0.0036678467209545055, \"Lat\": 38.88347448559672, \"Long\": -94.14907777777768}]}}, {\"mode\": \"vega-lite\"});\n",
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"text/plain": [
@@ -566,19 +566,19 @@
"version": "3.7.6"
},
"papermill": {
- "duration": 2.520956,
- "end_time": "2020-03-13T17:04:16.371464",
+ "duration": 2.508313,
+ "end_time": "2020-03-13T17:58:09.048792",
"environment_variables": {},
"exception": null,
- "input_path": "notebooks/Dashboard.ipynb",
+ "input_path": "/tmp/ajs106te/notebooks/Dashboard.ipynb",
"output_path": "runs/Dashboard.run.ipynb",
"parameters": {
- "PAPERMILL_INPUT_PATH": "notebooks/Dashboard.ipynb",
+ "PAPERMILL_INPUT_PATH": "/tmp/ajs106te/notebooks/Dashboard.ipynb",
"PAPERMILL_OUTPUT_PATH": "runs/Dashboard.run.ipynb",
- "rates_folder": "./data/covid-19_rates/",
- "ts_folder": "./data/covid-19_jhu-csse/"
+ "rates_folder": "/tmp/ajs106te/data/covid-19_rates",
+ "ts_folder": "/tmp/ajs106te/data/covid-19_jhu-csse"
},
- "start_time": "2020-03-13T17:04:13.850508",
+ "start_time": "2020-03-13T17:58:06.540479",
"version": "1.1.0"
}
},
diff --git a/runs/ToRates.run.ipynb b/runs/ToRates.run.ipynb
index 2925f4ee..e93912c7 100644
--- a/runs/ToRates.run.ipynb
+++ b/runs/ToRates.run.ipynb
@@ -4,10 +4,10 @@
"cell_type": "markdown",
"metadata": {
"papermill": {
- "duration": 0.019737,
- "end_time": "2020-03-13T14:54:48.276145",
+ "duration": 0.031319,
+ "end_time": "2020-03-13T17:58:04.199968",
"exception": false,
- "start_time": "2020-03-13T14:54:48.256408",
+ "start_time": "2020-03-13T17:58:04.168649",
"status": "completed"
},
"tags": []
@@ -21,10 +21,10 @@
"execution_count": 1,
"metadata": {
"papermill": {
- "duration": 0.327112,
- "end_time": "2020-03-13T14:54:48.613995",
+ "duration": 0.365213,
+ "end_time": "2020-03-13T17:58:04.574239",
"exception": false,
- "start_time": "2020-03-13T14:54:48.286883",
+ "start_time": "2020-03-13T17:58:04.209026",
"status": "completed"
},
"tags": []
@@ -40,10 +40,10 @@
"execution_count": 2,
"metadata": {
"papermill": {
- "duration": 0.025647,
- "end_time": "2020-03-13T14:54:48.658686",
+ "duration": 0.018416,
+ "end_time": "2020-03-13T17:58:04.613366",
"exception": false,
- "start_time": "2020-03-13T14:54:48.633039",
+ "start_time": "2020-03-13T17:58:04.594950",
"status": "completed"
},
"tags": [
@@ -63,10 +63,10 @@
"execution_count": 3,
"metadata": {
"papermill": {
- "duration": 0.027378,
- "end_time": "2020-03-13T14:54:48.697099",
+ "duration": 0.018935,
+ "end_time": "2020-03-13T17:58:04.641455",
"exception": false,
- "start_time": "2020-03-13T14:54:48.669721",
+ "start_time": "2020-03-13T17:58:04.622520",
"status": "completed"
},
"tags": [
@@ -76,21 +76,21 @@
"outputs": [],
"source": [
"# Parameters\n",
- "PAPERMILL_INPUT_PATH = \"notebooks/ToRates.ipynb\"\n",
+ "PAPERMILL_INPUT_PATH = \"/tmp/hmyw2rom/notebooks/ToRates.ipynb\"\n",
"PAPERMILL_OUTPUT_PATH = \"runs/ToRates.run.ipynb\"\n",
- "ts_folder = \"./data/covid-19_jhu-csse/\"\n",
- "wb_path = \"./data/worldbank/SP.POP.TOTL.zip\"\n",
- "out_folder = \"./data/covid-19_rates/\"\n"
+ "ts_folder = \"/tmp/hmyw2rom/data/covid-19_jhu-csse\"\n",
+ "wb_path = \"/tmp/hmyw2rom/data/worldbank/SP.POP.TOTL.zip\"\n",
+ "out_folder = \"data/covid-19_rates\"\n"
]
},
{
"cell_type": "markdown",
"metadata": {
"papermill": {
- "duration": 0.009984,
- "end_time": "2020-03-13T14:54:48.724400",
+ "duration": 0.00793,
+ "end_time": "2020-03-13T17:58:04.657374",
"exception": false,
- "start_time": "2020-03-13T14:54:48.714416",
+ "start_time": "2020-03-13T17:58:04.649444",
"status": "completed"
},
"tags": [
@@ -108,10 +108,10 @@
"execution_count": 4,
"metadata": {
"papermill": {
- "duration": 0.044299,
- "end_time": "2020-03-13T14:54:48.778200",
+ "duration": 0.02791,
+ "end_time": "2020-03-13T17:58:04.692567",
"exception": false,
- "start_time": "2020-03-13T14:54:48.733901",
+ "start_time": "2020-03-13T17:58:04.664657",
"status": "completed"
},
"tags": []
@@ -133,10 +133,10 @@
"execution_count": 5,
"metadata": {
"papermill": {
- "duration": 0.126546,
- "end_time": "2020-03-13T14:54:48.922552",
+ "duration": 0.127122,
+ "end_time": "2020-03-13T17:58:04.831576",
"exception": false,
- "start_time": "2020-03-13T14:54:48.796006",
+ "start_time": "2020-03-13T17:58:04.704454",
"status": "completed"
},
"tags": []
@@ -155,10 +155,10 @@
"execution_count": 6,
"metadata": {
"papermill": {
- "duration": 0.05437,
- "end_time": "2020-03-13T14:54:48.984940",
+ "duration": 0.052319,
+ "end_time": "2020-03-13T17:58:04.901105",
"exception": false,
- "start_time": "2020-03-13T14:54:48.930570",
+ "start_time": "2020-03-13T17:58:04.848786",
"status": "completed"
},
"tags": []
@@ -198,8 +198,6 @@
" <th>2020-01-30</th>\n",
" <th>2020-01-31</th>\n",
" <th>...</th>\n",
- " <th>2020-03-01</th>\n",
- " <th>2020-03-02</th>\n",
" <th>2020-03-03</th>\n",
" <th>2020-03-04</th>\n",
" <th>2020-03-05</th>\n",
@@ -208,6 +206,8 @@
" <th>2020-03-08</th>\n",
" <th>2020-03-09</th>\n",
" <th>2020-03-10</th>\n",
+ " <th>2020-03-11</th>\n",
+ " <th>2020-03-12</th>\n",
" </tr>\n",
" <tr>\n",
" <th>Country/Region</th>\n",
@@ -238,30 +238,30 @@
" </thead>\n",
" <tbody>\n",
" <tr>\n",
- " <th>Mainland China</th>\n",
- " <th>111.542903</th>\n",
- " <th>33.406936</th>\n",
- " <td>547</td>\n",
- " <td>639</td>\n",
- " <td>916</td>\n",
- " <td>1399</td>\n",
- " <td>2062</td>\n",
- " <td>2863</td>\n",
- " <td>5494</td>\n",
- " <td>6070</td>\n",
- " <td>8124</td>\n",
- " <td>9783</td>\n",
+ " <th>China</th>\n",
+ " <th>111.649082</th>\n",
+ " <th>32.828385</th>\n",
+ " <td>548</td>\n",
+ " <td>643</td>\n",
+ " <td>920</td>\n",
+ " <td>1406</td>\n",
+ " <td>2075</td>\n",
+ " <td>2877</td>\n",
+ " <td>5509</td>\n",
+ " <td>6087</td>\n",
+ " <td>8141</td>\n",
+ " <td>9802</td>\n",
" <td>...</td>\n",
- " <td>79826</td>\n",
- " <td>80026</td>\n",
- " <td>80151</td>\n",
- " <td>80271</td>\n",
- " <td>80422</td>\n",
- " <td>80573</td>\n",
- " <td>80652</td>\n",
- " <td>80699</td>\n",
- " <td>80735</td>\n",
- " <td>80757</td>\n",
+ " <td>80261</td>\n",
+ " <td>80386</td>\n",
+ " <td>80537</td>\n",
+ " <td>80690</td>\n",
+ " <td>80770</td>\n",
+ " <td>80823</td>\n",
+ " <td>80860</td>\n",
+ " <td>80887</td>\n",
+ " <td>80921</td>\n",
+ " <td>80932</td>\n",
" </tr>\n",
" <tr>\n",
" <th>Italy</th>\n",
@@ -278,8 +278,6 @@
" <td>0</td>\n",
" <td>2</td>\n",
" <td>...</td>\n",
- " <td>1694</td>\n",
- " <td>2036</td>\n",
" <td>2502</td>\n",
" <td>3089</td>\n",
" <td>3858</td>\n",
@@ -288,9 +286,11 @@
" <td>7375</td>\n",
" <td>9172</td>\n",
" <td>10149</td>\n",
+ " <td>12462</td>\n",
+ " <td>12462</td>\n",
" </tr>\n",
" <tr>\n",
- " <th>Iran (Islamic Republic of)</th>\n",
+ " <th>Iran</th>\n",
" <th>53.000000</th>\n",
" <th>32.000000</th>\n",
" <td>0</td>\n",
@@ -304,8 +304,6 @@
" <td>0</td>\n",
" <td>0</td>\n",
" <td>...</td>\n",
- " <td>978</td>\n",
- " <td>1501</td>\n",
" <td>2336</td>\n",
" <td>2922</td>\n",
" <td>3513</td>\n",
@@ -314,9 +312,11 @@
" <td>6566</td>\n",
" <td>7161</td>\n",
" <td>8042</td>\n",
+ " <td>9000</td>\n",
+ " <td>10075</td>\n",
" </tr>\n",
" <tr>\n",
- " <th>Republic of Korea</th>\n",
+ " <th>Korea, South</th>\n",
" <th>128.000000</th>\n",
" <th>36.000000</th>\n",
" <td>1</td>\n",
@@ -330,8 +330,6 @@
" <td>4</td>\n",
" <td>11</td>\n",
" <td>...</td>\n",
- " <td>3736</td>\n",
- " <td>4335</td>\n",
" <td>5186</td>\n",
" <td>5621</td>\n",
" <td>6088</td>\n",
@@ -340,11 +338,13 @@
" <td>7314</td>\n",
" <td>7478</td>\n",
" <td>7513</td>\n",
+ " <td>7755</td>\n",
+ " <td>7869</td>\n",
" </tr>\n",
" <tr>\n",
" <th>France</th>\n",
- " <th>2.000000</th>\n",
- " <th>47.000000</th>\n",
+ " <th>-41.223233</th>\n",
+ " <th>27.399467</th>\n",
" <td>0</td>\n",
" <td>0</td>\n",
" <td>2</td>\n",
@@ -356,104 +356,80 @@
" <td>5</td>\n",
" <td>5</td>\n",
" <td>...</td>\n",
- " <td>130</td>\n",
- " <td>191</td>\n",
" <td>204</td>\n",
- " <td>285</td>\n",
- " <td>377</td>\n",
- " <td>653</td>\n",
- " <td>949</td>\n",
- " <td>1126</td>\n",
- " <td>1209</td>\n",
- " <td>1784</td>\n",
+ " <td>288</td>\n",
+ " <td>380</td>\n",
+ " <td>656</td>\n",
+ " <td>952</td>\n",
+ " <td>1129</td>\n",
+ " <td>1212</td>\n",
+ " <td>1787</td>\n",
+ " <td>2284</td>\n",
+ " <td>2284</td>\n",
" </tr>\n",
" </tbody>\n",
"</table>\n",
- "<p>5 rows × 49 columns</p>\n",
+ "<p>5 rows × 51 columns</p>\n",
"</div>"
],
"text/plain": [
- " 2020-01-22 2020-01-23 \\\n",
- "Country/Region Long Lat \n",
- "Mainland China 111.542903 33.406936 547 639 \n",
- "Italy 12.000000 43.000000 0 0 \n",
- "Iran (Islamic Republic of) 53.000000 32.000000 0 0 \n",
- "Republic of Korea 128.000000 36.000000 1 1 \n",
- "France 2.000000 47.000000 0 0 \n",
+ " 2020-01-22 2020-01-23 2020-01-24 \\\n",
+ "Country/Region Long Lat \n",
+ "China 111.649082 32.828385 548 643 920 \n",
+ "Italy 12.000000 43.000000 0 0 0 \n",
+ "Iran 53.000000 32.000000 0 0 0 \n",
+ "Korea, South 128.000000 36.000000 1 1 2 \n",
+ "France -41.223233 27.399467 0 0 2 \n",
"\n",
- " 2020-01-24 2020-01-25 \\\n",
- "Country/Region Long Lat \n",
- "Mainland China 111.542903 33.406936 916 1399 \n",
- "Italy 12.000000 43.000000 0 0 \n",
- "Iran (Islamic Republic of) 53.000000 32.000000 0 0 \n",
- "Republic of Korea 128.000000 36.000000 2 2 \n",
- "France 2.000000 47.000000 2 3 \n",
+ " 2020-01-25 2020-01-26 2020-01-27 \\\n",
+ "Country/Region Long Lat \n",
+ "China 111.649082 32.828385 1406 2075 2877 \n",
+ "Italy 12.000000 43.000000 0 0 0 \n",
+ "Iran 53.000000 32.000000 0 0 0 \n",
+ "Korea, South 128.000000 36.000000 2 3 4 \n",
+ "France -41.223233 27.399467 3 3 3 \n",
"\n",
- " 2020-01-26 2020-01-27 \\\n",
- "Country/Region Long Lat \n",
- "Mainland China 111.542903 33.406936 2062 2863 \n",
- "Italy 12.000000 43.000000 0 0 \n",
- "Iran (Islamic Republic of) 53.000000 32.000000 0 0 \n",
- "Republic of Korea 128.000000 36.000000 3 4 \n",
- "France 2.000000 47.000000 3 3 \n",
+ " 2020-01-28 2020-01-29 2020-01-30 \\\n",
+ "Country/Region Long Lat \n",
+ "China 111.649082 32.828385 5509 6087 8141 \n",
+ "Italy 12.000000 43.000000 0 0 0 \n",
+ "Iran 53.000000 32.000000 0 0 0 \n",
+ "Korea, South 128.000000 36.000000 4 4 4 \n",
+ "France -41.223233 27.399467 4 5 5 \n",
"\n",
- " 2020-01-28 2020-01-29 \\\n",
- "Country/Region Long Lat \n",
- "Mainland China 111.542903 33.406936 5494 6070 \n",
- "Italy 12.000000 43.000000 0 0 \n",
- "Iran (Islamic Republic of) 53.000000 32.000000 0 0 \n",
- "Republic of Korea 128.000000 36.000000 4 4 \n",
- "France 2.000000 47.000000 4 5 \n",
+ " 2020-01-31 ... 2020-03-03 2020-03-04 \\\n",
+ "Country/Region Long Lat ... \n",
+ "China 111.649082 32.828385 9802 ... 80261 80386 \n",
+ "Italy 12.000000 43.000000 2 ... 2502 3089 \n",
+ "Iran 53.000000 32.000000 0 ... 2336 2922 \n",
+ "Korea, South 128.000000 36.000000 11 ... 5186 5621 \n",
+ "France -41.223233 27.399467 5 ... 204 288 \n",
"\n",
- " 2020-01-30 2020-01-31 ... \\\n",
- "Country/Region Long Lat ... \n",
- "Mainland China 111.542903 33.406936 8124 9783 ... \n",
- "Italy 12.000000 43.000000 0 2 ... \n",
- "Iran (Islamic Republic of) 53.000000 32.000000 0 0 ... \n",
- "Republic of Korea 128.000000 36.000000 4 11 ... \n",
- "France 2.000000 47.000000 5 5 ... \n",
+ " 2020-03-05 2020-03-06 2020-03-07 \\\n",
+ "Country/Region Long Lat \n",
+ "China 111.649082 32.828385 80537 80690 80770 \n",
+ "Italy 12.000000 43.000000 3858 4636 5883 \n",
+ "Iran 53.000000 32.000000 3513 4747 5823 \n",
+ "Korea, South 128.000000 36.000000 6088 6593 7041 \n",
+ "France -41.223233 27.399467 380 656 952 \n",
"\n",
- " 2020-03-01 2020-03-02 \\\n",
- "Country/Region Long Lat \n",
- "Mainland China 111.542903 33.406936 79826 80026 \n",
- "Italy 12.000000 43.000000 1694 2036 \n",
- "Iran (Islamic Republic of) 53.000000 32.000000 978 1501 \n",
- "Republic of Korea 128.000000 36.000000 3736 4335 \n",
- "France 2.000000 47.000000 130 191 \n",
+ " 2020-03-08 2020-03-09 2020-03-10 \\\n",
+ "Country/Region Long Lat \n",
+ "China 111.649082 32.828385 80823 80860 80887 \n",
+ "Italy 12.000000 43.000000 7375 9172 10149 \n",
+ "Iran 53.000000 32.000000 6566 7161 8042 \n",
+ "Korea, South 128.000000 36.000000 7314 7478 7513 \n",
+ "France -41.223233 27.399467 1129 1212 1787 \n",
"\n",
- " 2020-03-03 2020-03-04 \\\n",
- "Country/Region Long Lat \n",
- "Mainland China 111.542903 33.406936 80151 80271 \n",
- "Italy 12.000000 43.000000 2502 3089 \n",
- "Iran (Islamic Republic of) 53.000000 32.000000 2336 2922 \n",
- "Republic of Korea 128.000000 36.000000 5186 5621 \n",
- "France 2.000000 47.000000 204 285 \n",
+ " 2020-03-11 2020-03-12 \n",
+ "Country/Region Long Lat \n",
+ "China 111.649082 32.828385 80921 80932 \n",
+ "Italy 12.000000 43.000000 12462 12462 \n",
+ "Iran 53.000000 32.000000 9000 10075 \n",
+ "Korea, South 128.000000 36.000000 7755 7869 \n",
+ "France -41.223233 27.399467 2284 2284 \n",
"\n",
- " 2020-03-05 2020-03-06 \\\n",
- "Country/Region Long Lat \n",
- "Mainland China 111.542903 33.406936 80422 80573 \n",
- "Italy 12.000000 43.000000 3858 4636 \n",
- "Iran (Islamic Republic of) 53.000000 32.000000 3513 4747 \n",
- "Republic of Korea 128.000000 36.000000 6088 6593 \n",
- "France 2.000000 47.000000 377 653 \n",
- "\n",
- " 2020-03-07 2020-03-08 \\\n",
- "Country/Region Long Lat \n",
- "Mainland China 111.542903 33.406936 80652 80699 \n",
- "Italy 12.000000 43.000000 5883 7375 \n",
- "Iran (Islamic Republic of) 53.000000 32.000000 5823 6566 \n",
- "Republic of Korea 128.000000 36.000000 7041 7314 \n",
- "France 2.000000 47.000000 949 1126 \n",
- "\n",
- " 2020-03-09 2020-03-10 \n",
- "Country/Region Long Lat \n",
- "Mainland China 111.542903 33.406936 80735 80757 \n",
- "Italy 12.000000 43.000000 9172 10149 \n",
- "Iran (Islamic Republic of) 53.000000 32.000000 7161 8042 \n",
- "Republic of Korea 128.000000 36.000000 7478 7513 \n",
- "France 2.000000 47.000000 1209 1784 \n",
- "\n",
- "[5 rows x 49 columns]"
+ "[5 rows x 51 columns]"
]
},
"execution_count": 6,
@@ -469,10 +445,10 @@
"cell_type": "markdown",
"metadata": {
"papermill": {
- "duration": 0.011038,
- "end_time": "2020-03-13T14:54:49.012475",
+ "duration": 0.012028,
+ "end_time": "2020-03-13T17:58:04.932580",
"exception": false,
- "start_time": "2020-03-13T14:54:49.001437",
+ "start_time": "2020-03-13T17:58:04.920552",
"status": "completed"
},
"tags": []
@@ -486,10 +462,10 @@
"execution_count": 7,
"metadata": {
"papermill": {
- "duration": 0.043639,
- "end_time": "2020-03-13T14:54:49.064213",
+ "duration": 0.044223,
+ "end_time": "2020-03-13T17:58:04.984764",
"exception": false,
- "start_time": "2020-03-13T14:54:49.020574",
+ "start_time": "2020-03-13T17:58:04.940541",
"status": "completed"
},
"tags": []
@@ -505,10 +481,10 @@
"cell_type": "markdown",
"metadata": {
"papermill": {
- "duration": 0.010307,
- "end_time": "2020-03-13T14:54:49.091394",
+ "duration": 0.010228,
+ "end_time": "2020-03-13T17:58:05.011248",
"exception": false,
- "start_time": "2020-03-13T14:54:49.081087",
+ "start_time": "2020-03-13T17:58:05.001020",
"status": "completed"
},
"tags": []
@@ -522,10 +498,10 @@
"execution_count": 8,
"metadata": {
"papermill": {
- "duration": 0.055137,
- "end_time": "2020-03-13T14:54:49.154951",
+ "duration": 0.052242,
+ "end_time": "2020-03-13T17:58:05.071551",
"exception": false,
- "start_time": "2020-03-13T14:54:49.099814",
+ "start_time": "2020-03-13T17:58:05.019309",
"status": "completed"
},
"tags": []
@@ -658,10 +634,10 @@
"cell_type": "markdown",
"metadata": {
"papermill": {
- "duration": 0.009197,
- "end_time": "2020-03-13T14:54:49.179422",
+ "duration": 0.009568,
+ "end_time": "2020-03-13T17:58:05.097349",
"exception": false,
- "start_time": "2020-03-13T14:54:49.170225",
+ "start_time": "2020-03-13T17:58:05.087781",
"status": "completed"
},
"tags": []
@@ -675,10 +651,10 @@
"execution_count": 9,
"metadata": {
"papermill": {
- "duration": 0.048983,
- "end_time": "2020-03-13T14:54:49.237289",
+ "duration": 0.038944,
+ "end_time": "2020-03-13T17:58:05.144958",
"exception": false,
- "start_time": "2020-03-13T14:54:49.188306",
+ "start_time": "2020-03-13T17:58:05.106014",
"status": "completed"
},
"tags": []
@@ -708,10 +684,10 @@
"cell_type": "markdown",
"metadata": {
"papermill": {
- "duration": 0.010552,
- "end_time": "2020-03-13T14:54:49.263442",
+ "duration": 0.010532,
+ "end_time": "2020-03-13T17:58:05.172203",
"exception": false,
- "start_time": "2020-03-13T14:54:49.252890",
+ "start_time": "2020-03-13T17:58:05.161671",
"status": "completed"
},
"tags": []
@@ -724,10 +700,10 @@
"cell_type": "markdown",
"metadata": {
"papermill": {
- "duration": 0.008224,
- "end_time": "2020-03-13T14:54:49.280239",
+ "duration": 0.008912,
+ "end_time": "2020-03-13T17:58:05.189883",
"exception": false,
- "start_time": "2020-03-13T14:54:49.272015",
+ "start_time": "2020-03-13T17:58:05.180971",
"status": "completed"
},
"tags": []
@@ -741,10 +717,10 @@
"execution_count": 10,
"metadata": {
"papermill": {
- "duration": 0.081057,
- "end_time": "2020-03-13T14:54:49.370031",
+ "duration": 0.076031,
+ "end_time": "2020-03-13T17:58:05.275002",
"exception": false,
- "start_time": "2020-03-13T14:54:49.288974",
+ "start_time": "2020-03-13T17:58:05.198971",
"status": "completed"
},
"tags": []
@@ -769,10 +745,10 @@
"execution_count": 11,
"metadata": {
"papermill": {
- "duration": 0.065887,
- "end_time": "2020-03-13T14:54:49.458887",
+ "duration": 0.062766,
+ "end_time": "2020-03-13T17:58:05.356294",
"exception": false,
- "start_time": "2020-03-13T14:54:49.393000",
+ "start_time": "2020-03-13T17:58:05.293528",
"status": "completed"
},
"tags": []
@@ -805,20 +781,20 @@
"version": "3.7.6"
},
"papermill": {
- "duration": 2.37776,
- "end_time": "2020-03-13T14:54:49.786899",
+ "duration": 2.356374,
+ "end_time": "2020-03-13T17:58:05.683344",
"environment_variables": {},
"exception": null,
- "input_path": "notebooks/ToRates.ipynb",
+ "input_path": "/tmp/hmyw2rom/notebooks/ToRates.ipynb",
"output_path": "runs/ToRates.run.ipynb",
"parameters": {
- "PAPERMILL_INPUT_PATH": "notebooks/ToRates.ipynb",
+ "PAPERMILL_INPUT_PATH": "/tmp/hmyw2rom/notebooks/ToRates.ipynb",
"PAPERMILL_OUTPUT_PATH": "runs/ToRates.run.ipynb",
- "out_folder": "./data/covid-19_rates/",
- "ts_folder": "./data/covid-19_jhu-csse/",
- "wb_path": "./data/worldbank/SP.POP.TOTL.zip"
+ "out_folder": "data/covid-19_rates",
+ "ts_folder": "/tmp/hmyw2rom/data/covid-19_jhu-csse",
+ "wb_path": "/tmp/hmyw2rom/data/worldbank/SP.POP.TOTL.zip"
},
- "start_time": "2020-03-13T14:54:47.409139",
+ "start_time": "2020-03-13T17:58:03.326970",
"version": "1.1.0"
}
},
--
GitLab