class: Workflow
cwlVersion: v1.0
hints: []
inputs:
  input_1:
    default:
      class: File
      path: ../../notebooks/covidtracking.ipynb
    streamable: false
    type: File
  input_10:
    default:
      class: Directory
      listing: []
      path: ../../data/covid-19_jhu-csse
    streamable: false
    type: Directory
  input_11:
    default: rates_folder
    streamable: false
    type: string
  input_12:
    default:
      class: Directory
      listing: []
      path: ../../data/covid-19_rates
    streamable: false
    type: Directory
  input_13:
    default: geodata_path
    streamable: false
    type: string
  input_14:
    default:
      class: File
      path: ../../data/geodata/geo_data.csv
    streamable: false
    type: File
  input_15:
    default: atlas_path
    streamable: false
    type: string
  input_16:
    default:
      class: Directory
      listing: []
      path: ../../data/atlas
    streamable: false
    type: Directory
  input_17:
    default:
      class: File
      path: ../../notebooks/openzh-covid-19.ipynb
    streamable: false
    type: File
  input_18:
    default:
      class: Directory
      listing: []
      path: ../../data/atlas
    streamable: false
    type: Directory
  input_19:
    default: runs/openzh-covid-19.run.ipynb
    streamable: false
    type: string
  input_2:
    default: runs/covidtracking.run.ipynb
    streamable: false
    type: string
  input_20:
    default: save_figures
    streamable: false
    type: string
  input_21:
    default: 'True'
    streamable: false
    type: string
  input_22:
    default: data_path
    streamable: false
    type: string
  input_23:
    default:
      class: Directory
      listing: []
      path: ../../data/openzh-covid-19
    streamable: false
    type: Directory
  input_24:
    default: figures_path
    streamable: false
    type: string
  input_25:
    default: figures
    streamable: false
    type: string
  input_26:
    default: atlas_path
    streamable: false
    type: string
  input_3:
    default: data_path
    streamable: false
    type: string
  input_4:
    default:
      class: Directory
      listing: []
      path: ../../data/covidtracking
    streamable: false
    type: Directory
  input_5:
    default: atlas_path
    streamable: false
    type: string
  input_6:
    default:
      class: Directory
      listing: []
      path: ../../data/atlas
    streamable: false
    type: Directory
  input_7:
    default:
      class: File
      path: ../../notebooks/Dashboard.ipynb
    streamable: false
    type: File
  input_8:
    default: runs/Dashboard.run.ipynb
    streamable: false
    type: string
  input_9:
    default: ts_folder
    streamable: false
    type: string
outputs:
  output_0:
    outputSource: step_3/output_1
    streamable: false
    type: Directory
  output_1:
    outputSource: step_2/output_0
    streamable: false
    type: File
  output_2:
    outputSource: step_1/output_0
    streamable: false
    type: File
  output_3:
    outputSource: step_3/output_0
    streamable: false
    type: File
requirements: []
steps:
  step_1:
    in:
      input_1: input_1
      input_2: input_2
      input_3: input_3
      input_4: input_4
      input_5: input_5
      input_6: input_6
    out:
    - output_0
    run: 2fba4568d8784fb99872b6c8a35f66b9_papermill.cwl
  step_2:
    in:
      input_10: input_7
      input_11: input_8
      input_2: input_9
      input_3: input_10
      input_4: input_11
      input_5: input_12
      input_6: input_13
      input_7: input_14
      input_8: input_15
      input_9: input_16
    out:
    - output_0
    run: edeae7a3f9bd41579941a5f9b0eaf2aa_papermill.cwl
  step_3:
    in:
      input_1: input_17
      input_10: input_18
      input_2: input_19
      input_3: input_20
      input_4: input_21
      input_5: input_22
      input_6: input_23
      input_7: input_24
      input_8: input_25
      input_9: input_26
    out:
    - output_1
    - output_0
    run: d03bdcf1bad440d7ad5010cd182358d1_papermill.cwl