FROM renku/renkulab:renku0.10.2-r3.6.1-0.6.1 USER root RUN apt-get update && \ apt-get install -y --no-install-recommends \ apt-utils \ dirmngr \ gpg-agent \ less \ libcurl4-openssl-dev \ libxml2-dev \ libz-dev \ software-properties-common USER ${NB_USER} # install the R dependencies COPY install.R /tmp/ RUN R -f /tmp/install.R # install the python dependencies COPY requirements.txt environment.yml /tmp/ RUN conda env update -q -f /tmp/environment.yml && \ /opt/conda/bin/pip install --ignore-installed -r /tmp/requirements.txt && \ jupyter labextension install --no-build @jupyter-voila/jupyterlab-preview && \ jupyter labextension install --no-build @jupyter-widgets/jupyterlab-manager && \ conda clean -y --all && \ conda env export -n "root" && \ jupyter lab build # install our utilities package COPY --chown=rstudio:rstudio src /code/src RUN ln -s /code/src RUN pip install -e src/covid-19/covid_19_dashboard