diff --git a/.gitattributes b/.gitattributes
index 1ec7704b56d2a73333e4e2a8bc661641a2ee2634..bc659517c236a20cb99cb2006ee11dc70016fdec 100644
--- a/.gitattributes
+++ b/.gitattributes
@@ -600,3 +600,4 @@ data/covid-19_jhu-csse/csse_covid_19_daily_reports/10-20-2020.csv filter=lfs dif
data/covid-19_jhu-csse/csse_covid_19_daily_reports/10-21-2020.csv filter=lfs diff=lfs merge=lfs -text
data/covid-19_jhu-csse/csse_covid_19_daily_reports/10-22-2020.csv filter=lfs diff=lfs merge=lfs -text
data/covid-19_jhu-csse/csse_covid_19_daily_reports/10-23-2020.csv filter=lfs diff=lfs merge=lfs -text
+data/covid-19_jhu-csse/csse_covid_19_daily_reports/10-24-2020.csv filter=lfs diff=lfs merge=lfs -text
diff --git a/.renku/datasets/286c58b1-dbbc-4caa-a23a-fcb001d5ac51/metadata.yml b/.renku/datasets/286c58b1-dbbc-4caa-a23a-fcb001d5ac51/metadata.yml
index 2518ae1bfaf66b0cddf8b4fc5ce8723bb1053076..e89a5fe1a3d1aa63c0792dfa3640e13206cdac27 100644
--- a/.renku/datasets/286c58b1-dbbc-4caa-a23a-fcb001d5ac51/metadata.yml
+++ b/.renku/datasets/286c58b1-dbbc-4caa-a23a-fcb001d5ac51/metadata.yml
@@ -172,7 +172,7 @@ files:
- schema:DigitalDocument
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- _label: data/covid-19-italy/dpc-covid19-ita-andamento-nazionale.json@b84d5deb1e12957e5751817259a3147350dec99b
+ _label: data/covid-19-italy/dpc-covid19-ita-andamento-nazionale.json@f72bf3b81b8f55857619459eedd1f98d5c915799
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@@ -199,7 +199,7 @@ files:
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- _label: dati-json/dpc-covid19-ita-andamento-nazionale.json@966a2b6cafcee958219c5395a20791c591bfb605
+ _label: dati-json/dpc-covid19-ita-andamento-nazionale.json@8e5685e8638028cde106819c8d40cbcabb661775
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added: '2020-03-19T10:45:32.448526+00:00'
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- _label: data/covid-19-italy/dpc-covid19-ita-province.json@b84d5deb1e12957e5751817259a3147350dec99b
+ _label: data/covid-19-italy/dpc-covid19-ita-province.json@f72bf3b81b8f55857619459eedd1f98d5c915799
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- _label: dati-json/dpc-covid19-ita-province.json@966a2b6cafcee958219c5395a20791c591bfb605
+ _label: dati-json/dpc-covid19-ita-province.json@8e5685e8638028cde106819c8d40cbcabb661775
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added: '2020-03-19T10:45:51.627833+00:00'
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@@ -282,7 +282,7 @@ files:
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- _label: data/covid-19-italy/dpc-covid19-ita-regioni.json@b84d5deb1e12957e5751817259a3147350dec99b
+ _label: data/covid-19-italy/dpc-covid19-ita-regioni.json@f72bf3b81b8f55857619459eedd1f98d5c915799
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- _label: dati-json/dpc-covid19-ita-regioni.json@966a2b6cafcee958219c5395a20791c591bfb605
+ _label: dati-json/dpc-covid19-ita-regioni.json@8e5685e8638028cde106819c8d40cbcabb661775
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added: '2020-03-19T10:46:24.163477+00:00'
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- _label: data/covid-19-italy/dpc-covid19-ita-province.csv@b84d5deb1e12957e5751817259a3147350dec99b
+ _label: data/covid-19-italy/dpc-covid19-ita-province.csv@f72bf3b81b8f55857619459eedd1f98d5c915799
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- _label: dati-province/dpc-covid19-ita-province.csv@966a2b6cafcee958219c5395a20791c591bfb605
+ _label: dati-province/dpc-covid19-ita-province.csv@8e5685e8638028cde106819c8d40cbcabb661775
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added: '2020-03-19T10:46:47.013799+00:00'
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- _label: data/covid-19-italy/dpc-covid19-ita-regioni.csv@b84d5deb1e12957e5751817259a3147350dec99b
+ _label: data/covid-19-italy/dpc-covid19-ita-regioni.csv@f72bf3b81b8f55857619459eedd1f98d5c915799
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- _label: dati-regioni/dpc-covid19-ita-regioni.csv@966a2b6cafcee958219c5395a20791c591bfb605
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- _label: data/covid-19-italy/dpc-covid19-ita-andamento-nazionale.csv@b84d5deb1e12957e5751817259a3147350dec99b
+ _label: data/covid-19-italy/dpc-covid19-ita-andamento-nazionale.csv@f72bf3b81b8f55857619459eedd1f98d5c915799
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diff --git a/.renku/datasets/78a35752-cc00-443d-8ed8-e37a82599099/metadata.yml b/.renku/datasets/78a35752-cc00-443d-8ed8-e37a82599099/metadata.yml
index 97d0c6781c9a701f196cd55239d6def46bddcb1a..3c0506e7260b4184eab1950a73238915a23a8d7d 100644
--- a/.renku/datasets/78a35752-cc00-443d-8ed8-e37a82599099/metadata.yml
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@@ -171,7 +171,7 @@ files:
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diff --git a/.renku/datasets/c9295d7a-0380-4a1b-8731-5c36d76cb8e7/metadata.yml b/.renku/datasets/c9295d7a-0380-4a1b-8731-5c36d76cb8e7/metadata.yml
index 8a3b690accc85b71e1c8c93cdb53134da162d97b..a6a7d1c8a9598c8c92e5729e09867e5079aeeb75 100644
--- a/.renku/datasets/c9295d7a-0380-4a1b-8731-5c36d76cb8e7/metadata.yml
+++ b/.renku/datasets/c9295d7a-0380-4a1b-8731-5c36d76cb8e7/metadata.yml
@@ -173,7 +173,7 @@ files:
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- _label: data/openzh-covid-19/COVID19_Fallzahlen_FL_total.csv@7cdaa55bf11e88493aa7a98791776eff1991dfe9
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- _label: fallzahlen_kanton_total_csv/COVID19_Fallzahlen_FL_total.csv@083a449b2a99f3c43aa89c5197750eead51cb614
+ _label: fallzahlen_kanton_total_csv/COVID19_Fallzahlen_FL_total.csv@ece1c1fd84a984b92bebad0614dfe59c8d472ab6
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- _label: data/openzh-covid-19/COVID19_Fallzahlen_Kanton_BE_total.csv@7cdaa55bf11e88493aa7a98791776eff1991dfe9
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- _label: fallzahlen_kanton_total_csv/COVID19_Fallzahlen_Kanton_SZ_total.csv@f3110515b9c7672c43a75f83072dab3c1133686c
+ _label: fallzahlen_kanton_total_csv/COVID19_Fallzahlen_Kanton_SZ_total.csv@25fd6c409d22ef9af68a3f5fc5b64406a31c9f0f
_project: null
added: '2020-03-21T12:52:27.719769+00:00'
based_on: null
@@ -1480,7 +1480,7 @@ files:
- schema:DigitalDocument
- wfprov:Artifact
_id: https://renkulab.io/blob/fe3b51618b36fb4bfc96679040604bd468b3c990/data/openzh-covid-19/COVID19_Fallzahlen_Kanton_JU_total.csv
- _label: data/openzh-covid-19/COVID19_Fallzahlen_Kanton_JU_total.csv@7cdaa55bf11e88493aa7a98791776eff1991dfe9
+ _label: data/openzh-covid-19/COVID19_Fallzahlen_Kanton_JU_total.csv@67d740df0a5ae7ae8bf786a8f731706417d7f7f1
_project:
'@type':
- prov:Location
@@ -1507,7 +1507,7 @@ files:
- schema:DigitalDocument
- wfprov:Artifact
_id: https://github.com/blob/82a6eadf342fa62bba7995b0fd487ba0ee7926a0/fallzahlen_kanton_total_csv/COVID19_Fallzahlen_Kanton_JU_total.csv
- _label: fallzahlen_kanton_total_csv/COVID19_Fallzahlen_Kanton_JU_total.csv@ee3ff36a4ea8d5f017962cf9ba8eb7d4afb955cd
+ _label: fallzahlen_kanton_total_csv/COVID19_Fallzahlen_Kanton_JU_total.csv@41b1dad8c1b23d94e03901887f52d42d75d48550
_project: null
added: '2020-03-21T12:52:27.792806+00:00'
based_on: null
@@ -1709,7 +1709,7 @@ files:
- schema:DigitalDocument
- wfprov:Artifact
_id: https://renkulab.io/blob/fe3b51618b36fb4bfc96679040604bd468b3c990/data/openzh-covid-19/COVID19_Fallzahlen_Kanton_VD_total.csv
- _label: data/openzh-covid-19/COVID19_Fallzahlen_Kanton_VD_total.csv@7cdaa55bf11e88493aa7a98791776eff1991dfe9
+ _label: data/openzh-covid-19/COVID19_Fallzahlen_Kanton_VD_total.csv@67d740df0a5ae7ae8bf786a8f731706417d7f7f1
_project:
'@type':
- prov:Location
@@ -1736,7 +1736,7 @@ files:
- schema:DigitalDocument
- wfprov:Artifact
_id: https://github.com/blob/7f7d82f7c2d51fced9fbdbbe3e185d78644903b9/fallzahlen_kanton_total_csv/COVID19_Fallzahlen_Kanton_VD_total.csv
- _label: fallzahlen_kanton_total_csv/COVID19_Fallzahlen_Kanton_VD_total.csv@390fd63ba2d315c2c303a8d9a5fc693ea7e3930e
+ _label: fallzahlen_kanton_total_csv/COVID19_Fallzahlen_Kanton_VD_total.csv@8a2b168d4a39e2cb885599a732adcf089935a9ed
_project: null
added: '2020-03-21T12:52:27.948127+00:00'
based_on: null
@@ -1773,7 +1773,7 @@ files:
- schema:DigitalDocument
- wfprov:Artifact
_id: https://renkulab.io/blob/fe3b51618b36fb4bfc96679040604bd468b3c990/data/openzh-covid-19/COVID19_Fallzahlen_Kanton_FR_total.csv
- _label: data/openzh-covid-19/COVID19_Fallzahlen_Kanton_FR_total.csv@7cdaa55bf11e88493aa7a98791776eff1991dfe9
+ _label: data/openzh-covid-19/COVID19_Fallzahlen_Kanton_FR_total.csv@67d740df0a5ae7ae8bf786a8f731706417d7f7f1
_project:
'@type':
- prov:Location
@@ -1800,7 +1800,7 @@ files:
- schema:DigitalDocument
- wfprov:Artifact
_id: https://github.com/blob/42860984cbcada947772a20c9170f8bdd41c245f/fallzahlen_kanton_total_csv/COVID19_Fallzahlen_Kanton_FR_total.csv
- _label: fallzahlen_kanton_total_csv/COVID19_Fallzahlen_Kanton_FR_total.csv@70b8a74af7f308335c17e7f27c311215171e8fdb
+ _label: fallzahlen_kanton_total_csv/COVID19_Fallzahlen_Kanton_FR_total.csv@2fd871d22d0844474423a1d3f6b13c90c1193505
_project: null
added: '2020-03-21T12:52:27.986097+00:00'
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@@ -1993,7 +1993,7 @@ files:
- schema:DigitalDocument
- wfprov:Artifact
_id: https://renkulab.io/blob/a20235e95ed0796729015be9450249779adf41fc/data/openzh-covid-19/COVID19_Fallzahlen_Kanton_SO_total.csv
- _label: data/openzh-covid-19/COVID19_Fallzahlen_Kanton_SO_total.csv@7cdaa55bf11e88493aa7a98791776eff1991dfe9
+ _label: data/openzh-covid-19/COVID19_Fallzahlen_Kanton_SO_total.csv@67d740df0a5ae7ae8bf786a8f731706417d7f7f1
_project:
'@type':
- prov:Location
@@ -2020,7 +2020,7 @@ files:
- schema:DigitalDocument
- wfprov:Artifact
_id: https://github.com/blob/6e45efdb8a36b1fd7f1a4d33a349be0ef0b49d51/fallzahlen_kanton_total_csv/COVID19_Fallzahlen_Kanton_SO_total.csv
- _label: fallzahlen_kanton_total_csv/COVID19_Fallzahlen_Kanton_SO_total.csv@518f8889a8adc6d75d15f8c99dfe190b8492c2f0
+ _label: fallzahlen_kanton_total_csv/COVID19_Fallzahlen_Kanton_SO_total.csv@aeb646e4850bbacc134079aeda2254ed07bd58be
_project: null
added: '2020-03-22T20:38:50.303516+00:00'
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diff --git a/.renku/datasets/dcac07eb-4c9c-40c5-b541-5072c8302750/metadata.yml b/.renku/datasets/dcac07eb-4c9c-40c5-b541-5072c8302750/metadata.yml
index 9a2eea875309f054c9f955998b9a7b006c0af34f..671f53c54f4f30cca9509b14c9bc27043f59e4d1 100644
--- a/.renku/datasets/dcac07eb-4c9c-40c5-b541-5072c8302750/metadata.yml
+++ b/.renku/datasets/dcac07eb-4c9c-40c5-b541-5072c8302750/metadata.yml
@@ -172,7 +172,7 @@ files:
- schema:DigitalDocument
- wfprov:Artifact
_id: https://renkulab.io/blob/b3a6a0b807c4c50ef89daf0c4fe5c42bee10805e/data/covid-19-us-nyt/us-counties.csv
- _label: data/covid-19-us-nyt/us-counties.csv@dae7268ae406a5baae8ab8a4176e70c7c28a2470
+ _label: data/covid-19-us-nyt/us-counties.csv@7bcc9fc2f6611e5b058bc2f167b891490c0ef961
_project:
'@type':
- prov:Location
@@ -199,7 +199,7 @@ files:
- schema:DigitalDocument
- wfprov:Artifact
_id: https://github.com/blob/6958d2ddf886345c99a3148a031d6bc676343150/us-counties.csv
- _label: us-counties.csv@cd2cbdfc60c7830b19716be7aa8ba9ec18ebfa88
+ _label: us-counties.csv@ca70be600e450cf5a9b2401958c8f3a5004e4e5a
_project: null
added: '2020-04-09T08:01:24.598142+00:00'
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@@ -300,7 +300,7 @@ files:
- schema:DigitalDocument
- wfprov:Artifact
_id: https://renkulab.io/blob/b3a6a0b807c4c50ef89daf0c4fe5c42bee10805e/data/covid-19-us-nyt/us-states.csv
- _label: data/covid-19-us-nyt/us-states.csv@dae7268ae406a5baae8ab8a4176e70c7c28a2470
+ _label: data/covid-19-us-nyt/us-states.csv@7bcc9fc2f6611e5b058bc2f167b891490c0ef961
_project:
'@type':
- prov:Location
@@ -327,7 +327,7 @@ files:
- schema:DigitalDocument
- wfprov:Artifact
_id: https://github.com/blob/6958d2ddf886345c99a3148a031d6bc676343150/us-states.csv
- _label: us-states.csv@cd2cbdfc60c7830b19716be7aa8ba9ec18ebfa88
+ _label: us-states.csv@ca70be600e450cf5a9b2401958c8f3a5004e4e5a
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diff --git a/.renku/datasets/f6726a5b-f973-45d5-b873-30fa0dff772f/metadata.yml b/.renku/datasets/f6726a5b-f973-45d5-b873-30fa0dff772f/metadata.yml
index 636292b2feb16fbe43e7c794bae6cdc35b8fb9fa..efdeea5d8512ce67dd9c150e9e358ddebb57d53c 100644
--- a/.renku/datasets/f6726a5b-f973-45d5-b873-30fa0dff772f/metadata.yml
+++ b/.renku/datasets/f6726a5b-f973-45d5-b873-30fa0dff772f/metadata.yml
@@ -172,7 +172,7 @@ files:
- schema:DigitalDocument
- wfprov:Artifact
_id: https://renkulab.io/blob/a4569ce5349e158b40d0abb65142cb4865537bea/data/covid-19_jhu-csse/time_series_covid19_confirmed_global.csv
- _label: data/covid-19_jhu-csse/time_series_covid19_confirmed_global.csv@e43cd79ed1d1bea11ff8bfdf9933395bb5d961ff
+ _label: data/covid-19_jhu-csse/time_series_covid19_confirmed_global.csv@9d5bace632f728aa1da9550ff9df3efd0176be15
_project:
'@type':
- prov:Location
@@ -199,7 +199,7 @@ files:
- schema:DigitalDocument
- wfprov:Artifact
_id: https://github.com/blob/0bba23f925700fe934849e6d27a4da295ee58419/csse_covid_19_data/csse_covid_19_time_series/time_series_covid19_confirmed_global.csv
- _label: csse_covid_19_data/csse_covid_19_time_series/time_series_covid19_confirmed_global.csv@861493045d2556c7854b5df95bd6e5f0c5bc8638
+ _label: csse_covid_19_data/csse_covid_19_time_series/time_series_covid19_confirmed_global.csv@2597510d1f8602cf54d02c7cf7d08ace6d9fc83e
_project: null
added: '2020-03-25T22:32:00.079001+00:00'
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- schema:DigitalDocument
- wfprov:Artifact
_id: https://renkulab.io/blob/2388872ae8a262eb345c4ff4ff9c536616b04f59/data/covid-19_jhu-csse/time_series_covid19_deaths_global.csv
- _label: data/covid-19_jhu-csse/time_series_covid19_deaths_global.csv@e43cd79ed1d1bea11ff8bfdf9933395bb5d961ff
+ _label: data/covid-19_jhu-csse/time_series_covid19_deaths_global.csv@9d5bace632f728aa1da9550ff9df3efd0176be15
_project:
'@type':
- prov:Location
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- schema:DigitalDocument
- wfprov:Artifact
_id: https://github.com/blob/0bba23f925700fe934849e6d27a4da295ee58419/csse_covid_19_data/csse_covid_19_time_series/time_series_covid19_deaths_global.csv
- _label: csse_covid_19_data/csse_covid_19_time_series/time_series_covid19_deaths_global.csv@861493045d2556c7854b5df95bd6e5f0c5bc8638
+ _label: csse_covid_19_data/csse_covid_19_time_series/time_series_covid19_deaths_global.csv@2597510d1f8602cf54d02c7cf7d08ace6d9fc83e
_project: null
added: '2020-03-25T22:35:21.498857+00:00'
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- schema:DigitalDocument
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_id: https://renkulab.io/blob/6144d6240b29ce3322a83b1d9a0364f4b7490db6/data/covid-19_jhu-csse/csse_covid_19_daily_reports/10-23-2020.csv
- _label: data/covid-19_jhu-csse/csse_covid_19_daily_reports/10-23-2020.csv@6144d6240b29ce3322a83b1d9a0364f4b7490db6
+ _label: data/covid-19_jhu-csse/csse_covid_19_daily_reports/10-23-2020.csv@9d5bace632f728aa1da9550ff9df3efd0176be15
_project:
'@type':
- prov:Location
- schema:Project
- _id: https://renkulab.io/projects/covid-19/covid-19-public-data
+ _id: https://localhost/projects/cramakri/covid-19-dashboard
created: '2020-03-11T21:43:12.736000+00:00'
creator:
'@type':
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- schema:DigitalDocument
- wfprov:Artifact
_id: https://github.com/blob/861493045d2556c7854b5df95bd6e5f0c5bc8638/csse_covid_19_data/csse_covid_19_daily_reports/10-23-2020.csv
- _label: csse_covid_19_data/csse_covid_19_daily_reports/10-23-2020.csv@861493045d2556c7854b5df95bd6e5f0c5bc8638
+ _label: csse_covid_19_data/csse_covid_19_daily_reports/10-23-2020.csv@fbdddf96a7fec99ecc649049ec83cdf801fded50
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added: '2020-10-24T07:23:10.470728+00:00'
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name: 10-23-2020.csv
path: data/covid-19_jhu-csse/csse_covid_19_daily_reports/10-23-2020.csv
url: https://github.com/CSSEGISandData/COVID-19.git
+- '@type':
+ - prov:Entity
+ - schema:DigitalDocument
+ - wfprov:Artifact
+ _id: https://renkulab.io/blob/d47bf1fdd2d7f49d3b16dde1796f372424be3cb1/data/covid-19_jhu-csse/csse_covid_19_daily_reports/10-24-2020.csv
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+ _project:
+ '@type':
+ - prov:Location
+ - schema:Project
+ _id: https://renkulab.io/projects/covid-19/covid-19-public-data
+ created: '2020-03-11T21:43:12.736000+00:00'
+ creator:
+ '@type':
+ - prov:Person
+ - schema:Person
+ _id: mailto:cramakri@ethz.ch
+ affiliation: null
+ alternate_name: null
+ email: cramakri@ethz.ch
+ label: Chandrasekhar Ramakrishnan
+ name: Chandrasekhar Ramakrishnan
+ name: covid-19-dashboard
+ updated: '2020-03-11T21:43:12.736000+00:00'
+ version: '4'
+ added: '2020-10-25T07:23:48.488069+00:00'
+ based_on:
+ '@type':
+ - prov:Entity
+ - schema:DigitalDocument
+ - wfprov:Artifact
+ _id: https://github.com/blob/2597510d1f8602cf54d02c7cf7d08ace6d9fc83e/csse_covid_19_data/csse_covid_19_daily_reports/10-24-2020.csv
+ _label: csse_covid_19_data/csse_covid_19_daily_reports/10-24-2020.csv@2597510d1f8602cf54d02c7cf7d08ace6d9fc83e
+ _project: null
+ added: '2020-10-25T07:23:21.727883+00:00'
+ based_on: null
+ creator:
+ - '@type':
+ - prov:Person
+ - schema:Person
+ _id: mailto:jhusystems@gmail.com
+ affiliation: null
+ alternate_name: null
+ email: jhusystems@gmail.com
+ label: CSSEGISandData
+ name: CSSEGISandData
+ external: false
+ name: 10-24-2020.csv
+ path: csse_covid_19_data/csse_covid_19_daily_reports/10-24-2020.csv
+ url: https://github.com/CSSEGISandData/COVID-19.git
+ creator:
+ - '@type':
+ - prov:Person
+ - schema:Person
+ _id: mailto:jhusystems@gmail.com
+ affiliation: null
+ alternate_name: null
+ email: jhusystems@gmail.com
+ label: CSSEGISandData
+ name: CSSEGISandData
+ external: false
+ name: 10-24-2020.csv
+ path: data/covid-19_jhu-csse/csse_covid_19_daily_reports/10-24-2020.csv
+ url: https://github.com/CSSEGISandData/COVID-19.git
identifier: f6726a5b-f973-45d5-b873-30fa0dff772f
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keywords: []
diff --git a/.renku/workflow/00f12aa777134609bc85411e3f5d8f6b.cwl b/.renku/workflow/00f12aa777134609bc85411e3f5d8f6b.cwl
new file mode 100644
index 0000000000000000000000000000000000000000..3e1c0278af0680e92eb03adcd381585981dd97c6
--- /dev/null
+++ b/.renku/workflow/00f12aa777134609bc85411e3f5d8f6b.cwl
@@ -0,0 +1,120 @@
+class: Workflow
+cwlVersion: v1.0
+hints: []
+inputs:
+ input_1:
+ default: states-metadata.json
+ streamable: false
+ type: string
+ input_2:
+ default: states-daily.json
+ streamable: false
+ type: string
+ input_3:
+ default: out_folder
+ streamable: false
+ type: string
+ input_4:
+ default: data/covidtracking
+ streamable: false
+ type: string
+ input_5:
+ default:
+ class: File
+ path: ../../notebooks/process/download-covidtracking-data.ipynb
+ streamable: false
+ type: File
+ input_6:
+ default: runs/download-covidtracking-data.runs.ipynb
+ streamable: false
+ type: string
+outputs:
+ output_1:
+ outputSource: step_3/output_0
+ streamable: false
+ type: File
+ output_3:
+ outputSource: step_3/output_1
+ streamable: false
+ type: Directory
+requirements: []
+steps:
+ step_1:
+ in:
+ filename: input_1
+ input_directory: step_3/output_1
+ out:
+ - output_file
+ run:
+ arguments: []
+ baseCommand:
+ - 'true'
+ class: CommandLineTool
+ cwlVersion: v1.0
+ hints: []
+ inputs:
+ filename:
+ default: states-metadata.json
+ streamable: false
+ type: string
+ input_directory:
+ streamable: false
+ type: Directory
+ outputs:
+ output_file:
+ outputBinding:
+ glob: $(inputs.filename)
+ streamable: false
+ type: File
+ permanentFailCodes: []
+ requirements:
+ - &id001
+ class: InlineJavascriptRequirement
+ - &id002
+ class: InitialWorkDirRequirement
+ listing: $(inputs.input_directory.listing)
+ successCodes: []
+ temporaryFailCodes: []
+ step_2:
+ in:
+ filename: input_2
+ input_directory: step_3/output_1
+ out:
+ - output_file
+ run:
+ arguments: []
+ baseCommand:
+ - 'true'
+ class: CommandLineTool
+ cwlVersion: v1.0
+ hints: []
+ inputs:
+ filename:
+ default: states-daily.json
+ streamable: false
+ type: string
+ input_directory:
+ streamable: false
+ type: Directory
+ outputs:
+ output_file:
+ outputBinding:
+ glob: $(inputs.filename)
+ streamable: false
+ type: File
+ permanentFailCodes: []
+ requirements:
+ - *id001
+ - *id002
+ successCodes: []
+ temporaryFailCodes: []
+ step_3:
+ in:
+ input_1: input_3
+ input_2: input_4
+ input_3: input_5
+ input_4: input_6
+ out:
+ - output_0
+ - output_1
+ run: a17d560c41a54f5aa307ce5f3c5effe5_papermill.cwl
diff --git a/data/covid-19-ecdc/covid-19-ecdc.csv b/data/covid-19-ecdc/covid-19-ecdc.csv
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--- a/data/covid-19-ecdc/covid-19-ecdc.csv
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-size 3506985
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+size 3522224
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index 432f6995cbe3124035b35c6185169d4b15461772..e762fb52b8cc47d4959f52b621c79791ff3013b3 100644
--- a/data/covid-19-italy/dpc-covid19-ita-andamento-nazionale.csv
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-size 25596
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version https://git-lfs.github.com/spec/v1
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- "start_time": "2020-10-24T07:53:17.812636",
+ "start_time": "2020-10-25T07:37:45.932577",
"status": "completed"
},
"tags": [
@@ -59,7 +59,7 @@
"outputs": [],
"source": [
"# Parameters\n",
- "PAPERMILL_INPUT_PATH = \"/tmp/ni4orh0_/notebooks/process/download-covidtracking-data.ipynb\"\n",
+ "PAPERMILL_INPUT_PATH = \"/tmp/g156d8nk/notebooks/process/download-covidtracking-data.ipynb\"\n",
"PAPERMILL_OUTPUT_PATH = \"runs/download-covidtracking-data.runs.ipynb\"\n",
"out_folder = \"data/covidtracking\"\n"
]
@@ -68,10 +68,10 @@
"cell_type": "markdown",
"metadata": {
"papermill": {
- "duration": 0.007658,
- "end_time": "2020-10-24T07:53:17.852212",
+ "duration": 0.007933,
+ "end_time": "2020-10-25T07:37:45.980254",
"exception": false,
- "start_time": "2020-10-24T07:53:17.844554",
+ "start_time": "2020-10-25T07:37:45.972321",
"status": "completed"
},
"tags": []
@@ -87,10 +87,10 @@
"execution_count": 4,
"metadata": {
"papermill": {
- "duration": 0.617007,
- "end_time": "2020-10-24T07:53:18.474980",
+ "duration": 0.6145,
+ "end_time": "2020-10-25T07:37:46.602858",
"exception": false,
- "start_time": "2020-10-24T07:53:17.857973",
+ "start_time": "2020-10-25T07:37:45.988358",
"status": "completed"
},
"tags": []
@@ -107,10 +107,10 @@
"execution_count": 5,
"metadata": {
"papermill": {
- "duration": 0.029508,
- "end_time": "2020-10-24T07:53:18.520364",
+ "duration": 0.019979,
+ "end_time": "2020-10-25T07:37:46.634561",
"exception": false,
- "start_time": "2020-10-24T07:53:18.490856",
+ "start_time": "2020-10-25T07:37:46.614582",
"status": "completed"
},
"tags": []
@@ -129,10 +129,10 @@
"execution_count": 6,
"metadata": {
"papermill": {
- "duration": 0.075423,
- "end_time": "2020-10-24T07:53:18.606156",
+ "duration": 0.088566,
+ "end_time": "2020-10-25T07:37:46.735021",
"exception": false,
- "start_time": "2020-10-24T07:53:18.530733",
+ "start_time": "2020-10-25T07:37:46.646455",
"status": "completed"
},
"tags": []
@@ -280,10 +280,10 @@
"cell_type": "markdown",
"metadata": {
"papermill": {
- "duration": 0.008246,
- "end_time": "2020-10-24T07:53:18.628357",
+ "duration": 0.007662,
+ "end_time": "2020-10-25T07:37:46.755490",
"exception": false,
- "start_time": "2020-10-24T07:53:18.620111",
+ "start_time": "2020-10-25T07:37:46.747828",
"status": "completed"
},
"tags": []
@@ -297,10 +297,10 @@
"execution_count": 7,
"metadata": {
"papermill": {
- "duration": 29.719818,
- "end_time": "2020-10-24T07:53:48.355673",
+ "duration": 29.73858,
+ "end_time": "2020-10-25T07:38:16.502066",
"exception": false,
- "start_time": "2020-10-24T07:53:18.635855",
+ "start_time": "2020-10-25T07:37:46.763486",
"status": "completed"
},
"tags": []
@@ -317,10 +317,10 @@
"execution_count": 8,
"metadata": {
"papermill": {
- "duration": 0.067044,
- "end_time": "2020-10-24T07:53:48.440245",
+ "duration": 0.064526,
+ "end_time": "2020-10-25T07:38:16.581680",
"exception": false,
- "start_time": "2020-10-24T07:53:48.373201",
+ "start_time": "2020-10-25T07:38:16.517154",
"status": "completed"
},
"tags": []
@@ -339,10 +339,10 @@
"execution_count": 9,
"metadata": {
"papermill": {
- "duration": 0.658594,
- "end_time": "2020-10-24T07:53:49.114333",
+ "duration": 0.658515,
+ "end_time": "2020-10-25T07:38:17.252086",
"exception": false,
- "start_time": "2020-10-24T07:53:48.455739",
+ "start_time": "2020-10-25T07:38:16.593571",
"status": "completed"
},
"tags": []
@@ -352,7 +352,7 @@
"name": "stdout",
"output_type": "stream",
"text": [
- "13101 data points\n"
+ "13157 data points\n"
]
},
{
@@ -402,21 +402,21 @@
" <tbody>\n",
" <tr>\n",
" <th>0</th>\n",
- " <td>20201023</td>\n",
+ " <td>20201024</td>\n",
" <td>AK</td>\n",
- " <td>13161.0</td>\n",
+ " <td>13535.0</td>\n",
" <td>NaN</td>\n",
" <td>539585.0</td>\n",
" <td>NaN</td>\n",
" <td>totalTestsViral</td>\n",
" <td>552746.0</td>\n",
- " <td>59.0</td>\n",
+ " <td>58.0</td>\n",
" <td>NaN</td>\n",
" <td>...</td>\n",
- " <td>552746</td>\n",
+ " <td>553120</td>\n",
" <td>0</td>\n",
" <td>0</td>\n",
- " <td>1b73fb16c097754ce2024af0e49f9d9514248af0</td>\n",
+ " <td>280ee400bd797c20b77218c9e54a0b6615f91a53</td>\n",
" <td>0</td>\n",
" <td>0</td>\n",
" <td>0</td>\n",
@@ -426,21 +426,21 @@
" </tr>\n",
" <tr>\n",
" <th>1</th>\n",
- " <td>20201023</td>\n",
+ " <td>20201024</td>\n",
" <td>AL</td>\n",
- " <td>180916.0</td>\n",
- " <td>25001.0</td>\n",
- " <td>1133858.0</td>\n",
+ " <td>183276.0</td>\n",
+ " <td>26330.0</td>\n",
+ " <td>1138922.0</td>\n",
" <td>NaN</td>\n",
" <td>totalTestsViral</td>\n",
- " <td>1289773.0</td>\n",
- " <td>888.0</td>\n",
+ " <td>1295868.0</td>\n",
+ " <td>920.0</td>\n",
" <td>19595.0</td>\n",
" <td>...</td>\n",
- " <td>1314774</td>\n",
- " <td>16</td>\n",
- " <td>147</td>\n",
- " <td>5323772280706f0dd467c842b6640d6f931d3c5a</td>\n",
+ " <td>1322198</td>\n",
+ " <td>7</td>\n",
+ " <td>0</td>\n",
+ " <td>7c16e74ce103ea23b8b2ef6881fc773d44d21f55</td>\n",
" <td>0</td>\n",
" <td>0</td>\n",
" <td>0</td>\n",
@@ -455,20 +455,20 @@
],
"text/plain": [
" date state positive probableCases negative pending \\\n",
- "0 20201023 AK 13161.0 NaN 539585.0 NaN \n",
- "1 20201023 AL 180916.0 25001.0 1133858.0 NaN \n",
+ "0 20201024 AK 13535.0 NaN 539585.0 NaN \n",
+ "1 20201024 AL 183276.0 26330.0 1138922.0 NaN \n",
"\n",
" totalTestResultsSource totalTestResults hospitalizedCurrently \\\n",
- "0 totalTestsViral 552746.0 59.0 \n",
- "1 totalTestsViral 1289773.0 888.0 \n",
+ "0 totalTestsViral 552746.0 58.0 \n",
+ "1 totalTestsViral 1295868.0 920.0 \n",
"\n",
" hospitalizedCumulative ... posNeg deathIncrease hospitalizedIncrease \\\n",
- "0 NaN ... 552746 0 0 \n",
- "1 19595.0 ... 1314774 16 147 \n",
+ "0 NaN ... 553120 0 0 \n",
+ "1 19595.0 ... 1322198 7 0 \n",
"\n",
" hash commercialScore \\\n",
- "0 1b73fb16c097754ce2024af0e49f9d9514248af0 0 \n",
- "1 5323772280706f0dd467c842b6640d6f931d3c5a 0 \n",
+ "0 280ee400bd797c20b77218c9e54a0b6615f91a53 0 \n",
+ "1 7c16e74ce103ea23b8b2ef6881fc773d44d21f55 0 \n",
"\n",
" negativeRegularScore negativeScore positiveScore score grade \n",
"0 0 0 0 0 \n",
@@ -508,18 +508,18 @@
"version": "3.7.3"
},
"papermill": {
- "duration": 37.048735,
- "end_time": "2020-10-24T07:53:49.543034",
+ "duration": 36.766249,
+ "end_time": "2020-10-25T07:38:17.574642",
"environment_variables": {},
"exception": null,
- "input_path": "/tmp/ni4orh0_/notebooks/process/download-covidtracking-data.ipynb",
+ "input_path": "/tmp/g156d8nk/notebooks/process/download-covidtracking-data.ipynb",
"output_path": "runs/download-covidtracking-data.runs.ipynb",
"parameters": {
- "PAPERMILL_INPUT_PATH": "/tmp/ni4orh0_/notebooks/process/download-covidtracking-data.ipynb",
+ "PAPERMILL_INPUT_PATH": "/tmp/g156d8nk/notebooks/process/download-covidtracking-data.ipynb",
"PAPERMILL_OUTPUT_PATH": "runs/download-covidtracking-data.runs.ipynb",
"out_folder": "data/covidtracking"
},
- "start_time": "2020-10-24T07:53:12.494299",
+ "start_time": "2020-10-25T07:37:40.808393",
"version": "1.1.0"
}
},