diff --git a/.renku/activity_index.yaml b/.renku/activity_index.yaml index e386007b540eaae38178fb736579de0cb18dc800..35e6c2277e44784721c1c12e0e45e32703853e92 100644 --- a/.renku/activity_index.yaml +++ b/.renku/activity_index.yaml @@ -339,6 +339,8 @@ data/covidtracking: - .renku/workflow/eb1295170b0246f0a2a5bcb36f0e63e6_migrated.yaml 8a20e24c9a221b590ae9920b9cea63f572e5e640: - .renku/workflow/fa2fcfa26e724c1884c92f9e853f70c1_migrated.yaml + 8a3562df3df892abbea7b28af315676cfd3c1f75: + - .renku/workflow/be4ee71d4f25469da2139318db7d0c70_migrated.yaml 8e75a5c01a06f0166832ae3453109fa862c72d0c: - .renku/workflow/b5e88e02f810476bbff5cdab58468563_migrated.yaml 8f4fa877e7743a22354701cc413a0597860d254d: @@ -767,6 +769,8 @@ data/covidtracking/states-daily.json: - .renku/workflow/eb1295170b0246f0a2a5bcb36f0e63e6_migrated.yaml 8a20e24c9a221b590ae9920b9cea63f572e5e640: - .renku/workflow/fa2fcfa26e724c1884c92f9e853f70c1_migrated.yaml + 8a3562df3df892abbea7b28af315676cfd3c1f75: + - .renku/workflow/be4ee71d4f25469da2139318db7d0c70_migrated.yaml 8e75a5c01a06f0166832ae3453109fa862c72d0c: - .renku/workflow/b5e88e02f810476bbff5cdab58468563_migrated.yaml 9122a1f49a500a96080d0e6a1736faf3d1d2b057: @@ -1186,6 +1190,8 @@ data/covidtracking/states-metadata.json: - .renku/workflow/eb1295170b0246f0a2a5bcb36f0e63e6_migrated.yaml 8a20e24c9a221b590ae9920b9cea63f572e5e640: - .renku/workflow/fa2fcfa26e724c1884c92f9e853f70c1_migrated.yaml + 8a3562df3df892abbea7b28af315676cfd3c1f75: + - .renku/workflow/be4ee71d4f25469da2139318db7d0c70_migrated.yaml 8e75a5c01a06f0166832ae3453109fa862c72d0c: - .renku/workflow/b5e88e02f810476bbff5cdab58468563_migrated.yaml 8f4fa877e7743a22354701cc413a0597860d254d: @@ -2570,6 +2576,8 @@ runs/download-covidtracking-data.runs.ipynb: - .renku/workflow/eb1295170b0246f0a2a5bcb36f0e63e6_migrated.yaml 8a20e24c9a221b590ae9920b9cea63f572e5e640: - .renku/workflow/fa2fcfa26e724c1884c92f9e853f70c1_migrated.yaml + 8a3562df3df892abbea7b28af315676cfd3c1f75: + - .renku/workflow/be4ee71d4f25469da2139318db7d0c70_migrated.yaml 8e75a5c01a06f0166832ae3453109fa862c72d0c: - .renku/workflow/b5e88e02f810476bbff5cdab58468563_migrated.yaml 8f4fa877e7743a22354701cc413a0597860d254d: diff --git a/.renku/workflow/975bb67340ec472c964083369b804c54.cwl b/.renku/workflow/975bb67340ec472c964083369b804c54.cwl deleted file mode 100644 index 9e05bcc7dee93e4b72bf898cff064da4fd2175eb..0000000000000000000000000000000000000000 --- a/.renku/workflow/975bb67340ec472c964083369b804c54.cwl +++ /dev/null @@ -1,120 +0,0 @@ -class: Workflow -cwlVersion: v1.0 -hints: [] -inputs: - input_1: - default: states-metadata.json - streamable: false - type: string - input_2: - default: states-daily.json - streamable: false - type: string - input_3: - default: out_folder - streamable: false - type: string - input_4: - default: data/covidtracking - streamable: false - type: string - input_5: - default: - class: File - path: ../../notebooks/process/download-covidtracking-data.ipynb - streamable: false - type: File - input_6: - default: runs/download-covidtracking-data.runs.ipynb - streamable: false - type: string -outputs: - output_2: - outputSource: step_3/output_0 - streamable: false - type: File - output_3: - outputSource: step_3/output_1 - streamable: false - type: Directory -requirements: [] -steps: - step_1: - in: - filename: input_1 - input_directory: step_3/output_1 - out: - - output_file - run: - arguments: [] - baseCommand: - - 'true' - class: CommandLineTool - cwlVersion: v1.0 - hints: [] - inputs: - filename: - default: states-metadata.json - streamable: false - type: string - input_directory: - streamable: false - type: Directory - outputs: - output_file: - outputBinding: - glob: $(inputs.filename) - streamable: false - type: File - permanentFailCodes: [] - requirements: - - &id001 - class: InlineJavascriptRequirement - - &id002 - class: InitialWorkDirRequirement - listing: $(inputs.input_directory.listing) - successCodes: [] - temporaryFailCodes: [] - step_2: - in: - filename: input_2 - input_directory: step_3/output_1 - out: - - output_file - run: - arguments: [] - baseCommand: - - 'true' - class: CommandLineTool - cwlVersion: v1.0 - hints: [] - inputs: - filename: - default: states-daily.json - streamable: false - type: string - input_directory: - streamable: false - type: Directory - outputs: - output_file: - outputBinding: - glob: $(inputs.filename) - streamable: false - type: File - permanentFailCodes: [] - requirements: - - *id001 - - *id002 - successCodes: [] - temporaryFailCodes: [] - step_3: - in: - input_1: input_3 - input_2: input_4 - input_3: input_5 - input_4: input_6 - out: - - output_1 - - output_0 - run: a17d560c41a54f5aa307ce5f3c5effe5_papermill.cwl diff --git a/.renku/workflow/be4ee71d4f25469da2139318db7d0c70_migrated.yaml b/.renku/workflow/be4ee71d4f25469da2139318db7d0c70_migrated.yaml new file mode 100644 index 0000000000000000000000000000000000000000..050043a2457ab9993467ace5e3ef65f6080331ab --- /dev/null +++ b/.renku/workflow/be4ee71d4f25469da2139318db7d0c70_migrated.yaml @@ -0,0 +1,434 @@ +- '@id': https://github.com/swissdatasciencecenter/renku-python/tree/v0.10.4 + '@type': + - http://purl.org/wf4ever/wfprov#WorkflowEngine + - http://www.w3.org/ns/prov#SoftwareAgent + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': renku 0.10.4 +- '@id': https://github.com/swissdatasciencecenter/renku-python/tree/v0.15.1 + '@type': + - http://purl.org/wf4ever/wfprov#WorkflowEngine + - http://www.w3.org/ns/prov#SoftwareAgent + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': renku 0.15.1 +- '@id': https://localhost/activities/commit/8a3562df3df892abbea7b28af315676cfd3c1f75 + '@type': + - http://purl.org/wf4ever/wfprov#ProcessRun + - http://purl.org/wf4ever/wfprov#WorkflowRun + - http://www.w3.org/ns/prov#Activity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#comment: + - '@value': renku rerun data/covidtracking/states-metadata.json data/covidtracking/states-daily.json + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': .renku/workflow/be4ee71d4f25469da2139318db7d0c70_migrated.yaml@8a3562df3df892abbea7b28af315676cfd3c1f75 + http://www.w3.org/ns/prov#atLocation: + - '@value': .renku/workflow/be4ee71d4f25469da2139318db7d0c70_migrated.yaml + http://www.w3.org/ns/prov#endedAtTime: + - '@type': http://www.w3.org/2001/XMLSchema#dateTime + '@value': '2020-11-04T07:36:08+00:00' + http://www.w3.org/ns/prov#influenced: [] + http://www.w3.org/ns/prov#qualifiedAssociation: + - '@id': https://localhost/activities/commit/8a3562df3df892abbea7b28af315676cfd3c1f75/association + http://www.w3.org/ns/prov#qualifiedUsage: + - '@id': https://localhost/activities/commit/8a3562df3df892abbea7b28af315676cfd3c1f75/inputs/1 + http://www.w3.org/ns/prov#startedAtTime: + - '@type': http://www.w3.org/2001/XMLSchema#dateTime + '@value': '2020-11-04T07:36:08+00:00' + http://www.w3.org/ns/prov#wasAssociatedWith: + - '@id': mailto:beepbop@example.com + - '@id': https://github.com/swissdatasciencecenter/renku-python/tree/v0.15.1 + http://www.w3.org/ns/prov#wasInformedBy: + - '@id': https://localhost/activities/commit/9b0313a079e8d1a3fdd2bfb4abdd01ca5604ab61 +- '@id': https://localhost/activities/commit/8a3562df3df892abbea7b28af315676cfd3c1f75/association + '@type': + - http://www.w3.org/ns/prov#Association + http://www.w3.org/ns/prov#agent: + - '@id': https://github.com/swissdatasciencecenter/renku-python/tree/v0.10.4 + http://www.w3.org/ns/prov#hadPlan: + - '@id': https://renkulab.io/runs/a8d6e4156da5c78364b194d29c91ece013c9a50d +- '@id': https://localhost/activities/commit/8a3562df3df892abbea7b28af315676cfd3c1f75/inputs/1 + '@type': + - http://www.w3.org/ns/prov#Usage + http://www.w3.org/ns/prov#entity: + - '@id': https://renkulab.io/blob/d754df040a4bf8f7cb7ae6ed4151830f9bb0f520/notebooks/process/download-covidtracking-data.ipynb + http://www.w3.org/ns/prov#hadRole: + - '@value': steps/step_1/inputs/3 +- '@id': https://localhost/activities/commit/8a3562df3df892abbea7b28af315676cfd3c1f75/steps/step_1 + '@type': + - http://purl.org/wf4ever/wfprov#ProcessRun + - http://www.w3.org/ns/prov#Activity + http://purl.org/wf4ever/wfprov#wasPartOfWorkflowRun: + - '@id': https://localhost/activities/commit/8a3562df3df892abbea7b28af315676cfd3c1f75 + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#comment: + - '@value': renku rerun data/covidtracking/states-metadata.json data/covidtracking/states-daily.json + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': .renku/workflow/be4ee71d4f25469da2139318db7d0c70_migrated.yaml@8a3562df3df892abbea7b28af315676cfd3c1f75 + http://www.w3.org/ns/prov#atLocation: + - '@value': .renku/workflow/be4ee71d4f25469da2139318db7d0c70_migrated.yaml + http://www.w3.org/ns/prov#endedAtTime: + - '@type': http://www.w3.org/2001/XMLSchema#dateTime + '@value': '2020-11-04T07:36:08+00:00' + http://www.w3.org/ns/prov#influenced: [] + http://www.w3.org/ns/prov#qualifiedAssociation: + - '@id': https://localhost/activities/commit/8a3562df3df892abbea7b28af315676cfd3c1f75/steps/step_1/association + http://www.w3.org/ns/prov#qualifiedUsage: + - '@id': https://localhost/activities/commit/8a3562df3df892abbea7b28af315676cfd3c1f75/steps/step_1/inputs/3 + http://www.w3.org/ns/prov#startedAtTime: + - '@type': http://www.w3.org/2001/XMLSchema#dateTime + '@value': '2020-11-04T07:36:08+00:00' + http://www.w3.org/ns/prov#wasAssociatedWith: + - '@id': mailto:beepbop@example.com + - '@id': https://github.com/swissdatasciencecenter/renku-python/tree/v0.15.1 + http://www.w3.org/ns/prov#wasInformedBy: + - '@id': https://localhost/activities/commit/9b0313a079e8d1a3fdd2bfb4abdd01ca5604ab61 + https://swissdatasciencecenter.github.io/renku-ontology#hasRunParameter: [] +- '@id': https://localhost/activities/commit/8a3562df3df892abbea7b28af315676cfd3c1f75/steps/step_1/association + '@type': + - http://www.w3.org/ns/prov#Association + http://www.w3.org/ns/prov#agent: + - '@id': https://github.com/swissdatasciencecenter/renku-python/tree/v0.10.4 + http://www.w3.org/ns/prov#hadPlan: + - '@id': https://renkulab.io/runs/53c4879c16b98814963aba411ccc4a9c672e83e5 +- '@id': https://localhost/activities/commit/8a3562df3df892abbea7b28af315676cfd3c1f75/steps/step_1/inputs/3 + '@type': + - http://www.w3.org/ns/prov#Usage + http://www.w3.org/ns/prov#entity: + - '@id': https://renkulab.io/blob/d754df040a4bf8f7cb7ae6ed4151830f9bb0f520/notebooks/process/download-covidtracking-data.ipynb + http://www.w3.org/ns/prov#hadRole: + - '@value': inputs/3 +- '@id': https://localhost/activities/commit/8a3562df3df892abbea7b28af315676cfd3c1f75/steps/step_1/outputs/2 + '@type': + - http://www.w3.org/ns/prov#Generation + http://www.w3.org/ns/prov#activity: + - '@id': https://localhost/activities/commit/8a3562df3df892abbea7b28af315676cfd3c1f75/steps/step_1 + - '@id': https://localhost/activities/commit/8a3562df3df892abbea7b28af315676cfd3c1f75 + http://www.w3.org/ns/prov#hadRole: + - '@value': outputs/2 +- '@id': https://localhost/activities/commit/8a3562df3df892abbea7b28af315676cfd3c1f75/steps/step_1/outputs/4 + '@type': + - http://www.w3.org/ns/prov#Generation + http://www.w3.org/ns/prov#activity: + - '@id': https://localhost/activities/commit/8a3562df3df892abbea7b28af315676cfd3c1f75/steps/step_1 + - '@id': https://localhost/activities/commit/8a3562df3df892abbea7b28af315676cfd3c1f75 + http://www.w3.org/ns/prov#hadRole: + - '@value': outputs/4 +- '@id': https://localhost/activities/commit/8a3562df3df892abbea7b28af315676cfd3c1f75/steps/step_1/tree/data/covidtracking/states-daily.json + '@type': + - http://www.w3.org/ns/prov#Generation + http://www.w3.org/ns/prov#activity: + - '@id': https://localhost/activities/commit/8a3562df3df892abbea7b28af315676cfd3c1f75 +- '@id': https://localhost/activities/commit/8a3562df3df892abbea7b28af315676cfd3c1f75/steps/step_1/tree/data/covidtracking/states-metadata.json + '@type': + - http://www.w3.org/ns/prov#Generation + http://www.w3.org/ns/prov#activity: + - '@id': https://localhost/activities/commit/8a3562df3df892abbea7b28af315676cfd3c1f75 +- '@id': https://renkulab.io/blob/8a3562df3df892abbea7b28af315676cfd3c1f75/data/covidtracking + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Collection + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': data/covidtracking@8a3562df3df892abbea7b28af315676cfd3c1f75 + http://www.w3.org/ns/prov#atLocation: + - '@value': data/covidtracking + http://www.w3.org/ns/prov#hadMember: + - '@id': https://renkulab.io/blob/8a3562df3df892abbea7b28af315676cfd3c1f75/data/covidtracking/states-daily.json + - '@id': https://renkulab.io/blob/8a3562df3df892abbea7b28af315676cfd3c1f75/data/covidtracking/states-metadata.json + http://www.w3.org/ns/prov#qualifiedGeneration: + - '@id': https://localhost/activities/commit/8a3562df3df892abbea7b28af315676cfd3c1f75/steps/step_1/outputs/2 +- '@id': https://renkulab.io/blob/8a3562df3df892abbea7b28af315676cfd3c1f75/data/covidtracking/states-daily.json + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': data/covidtracking/states-daily.json@8a3562df3df892abbea7b28af315676cfd3c1f75 + http://www.w3.org/ns/prov#atLocation: + - '@value': data/covidtracking/states-daily.json + http://www.w3.org/ns/prov#qualifiedGeneration: + - '@id': https://localhost/activities/commit/8a3562df3df892abbea7b28af315676cfd3c1f75/steps/step_1/tree/data/covidtracking/states-daily.json +- '@id': https://renkulab.io/blob/8a3562df3df892abbea7b28af315676cfd3c1f75/data/covidtracking/states-metadata.json + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': data/covidtracking/states-metadata.json@8a3562df3df892abbea7b28af315676cfd3c1f75 + http://www.w3.org/ns/prov#atLocation: + - '@value': data/covidtracking/states-metadata.json + http://www.w3.org/ns/prov#qualifiedGeneration: + - '@id': https://localhost/activities/commit/8a3562df3df892abbea7b28af315676cfd3c1f75/steps/step_1/tree/data/covidtracking/states-metadata.json +- '@id': https://renkulab.io/blob/8a3562df3df892abbea7b28af315676cfd3c1f75/runs/download-covidtracking-data.runs.ipynb + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': runs/download-covidtracking-data.runs.ipynb@8a3562df3df892abbea7b28af315676cfd3c1f75 + http://www.w3.org/ns/prov#atLocation: + - '@value': runs/download-covidtracking-data.runs.ipynb + http://www.w3.org/ns/prov#qualifiedGeneration: + - '@id': https://localhost/activities/commit/8a3562df3df892abbea7b28af315676cfd3c1f75/steps/step_1/outputs/4 +- '@id': https://renkulab.io/blob/ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658/data/covidtracking + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Collection + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': data/covidtracking@ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658 + http://www.w3.org/ns/prov#atLocation: + - '@value': data/covidtracking + http://www.w3.org/ns/prov#hadMember: + - '@id': https://renkulab.io/blob/ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658/data/covidtracking/states-daily.json + - '@id': https://renkulab.io/blob/ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658/data/covidtracking/states-metadata.json +- '@id': https://renkulab.io/blob/ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658/data/covidtracking/states-daily.json + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - 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