From dc616eedadecfe9fde12dbc4f973d37a54f53814 Mon Sep 17 00:00:00 2001 From: Rok Roskar <rok.roskar@sdsc.ethz.ch> Date: Thu, 27 May 2021 18:25:30 +0200 Subject: [PATCH] renku migrate: committing migrated workflow --- .renku/activity_index.yaml | 8 + .../a9077099792d4391aea39028fdfcbb18.cwl | 120 ----- ...348b63cc4542a0fdd26d0eecd6c2_migrated.yaml | 434 ++++++++++++++++++ 3 files changed, 442 insertions(+), 120 deletions(-) delete mode 100644 .renku/workflow/a9077099792d4391aea39028fdfcbb18.cwl create mode 100644 .renku/workflow/e8b5348b63cc4542a0fdd26d0eecd6c2_migrated.yaml diff --git a/.renku/activity_index.yaml b/.renku/activity_index.yaml index 0b7076a8e..2642bce0b 100644 --- a/.renku/activity_index.yaml +++ b/.renku/activity_index.yaml @@ -429,6 +429,8 @@ data/covidtracking: - .renku/workflow/5e9b323c62254515bc89b25172cf1c4f_migrated.yaml c38af6f655d24c2ea5e00f1b4ea159f4aaa3ef20: - .renku/workflow/a3c0adb07ab043579abfff5b98628253_migrated.yaml + c3eb34ce360662bc979d31e693adb8f298efb1fc: + - .renku/workflow/e8b5348b63cc4542a0fdd26d0eecd6c2_migrated.yaml c41914b8c268fefbe02a83efeca6383b869e6b7c: - .renku/workflow/de7ea086c3c241289aa0a9f89783dd4e_migrated.yaml c4a3a9b295cbbe268a8c086e9dc30385ee1b6046: @@ -863,6 +865,8 @@ data/covidtracking/states-daily.json: - .renku/workflow/5e9b323c62254515bc89b25172cf1c4f_migrated.yaml c38af6f655d24c2ea5e00f1b4ea159f4aaa3ef20: - .renku/workflow/a3c0adb07ab043579abfff5b98628253_migrated.yaml + c3eb34ce360662bc979d31e693adb8f298efb1fc: + - .renku/workflow/e8b5348b63cc4542a0fdd26d0eecd6c2_migrated.yaml c41914b8c268fefbe02a83efeca6383b869e6b7c: - .renku/workflow/de7ea086c3c241289aa0a9f89783dd4e_migrated.yaml c4a3a9b295cbbe268a8c086e9dc30385ee1b6046: @@ -1292,6 +1296,8 @@ data/covidtracking/states-metadata.json: - .renku/workflow/5e9b323c62254515bc89b25172cf1c4f_migrated.yaml c38af6f655d24c2ea5e00f1b4ea159f4aaa3ef20: - .renku/workflow/a3c0adb07ab043579abfff5b98628253_migrated.yaml + c3eb34ce360662bc979d31e693adb8f298efb1fc: + - .renku/workflow/e8b5348b63cc4542a0fdd26d0eecd6c2_migrated.yaml c41914b8c268fefbe02a83efeca6383b869e6b7c: - .renku/workflow/de7ea086c3c241289aa0a9f89783dd4e_migrated.yaml c4a3a9b295cbbe268a8c086e9dc30385ee1b6046: @@ -2692,6 +2698,8 @@ runs/download-covidtracking-data.runs.ipynb: - .renku/workflow/5e9b323c62254515bc89b25172cf1c4f_migrated.yaml c38af6f655d24c2ea5e00f1b4ea159f4aaa3ef20: - .renku/workflow/a3c0adb07ab043579abfff5b98628253_migrated.yaml + c3eb34ce360662bc979d31e693adb8f298efb1fc: + - .renku/workflow/e8b5348b63cc4542a0fdd26d0eecd6c2_migrated.yaml c41914b8c268fefbe02a83efeca6383b869e6b7c: - .renku/workflow/de7ea086c3c241289aa0a9f89783dd4e_migrated.yaml c4a3a9b295cbbe268a8c086e9dc30385ee1b6046: diff --git a/.renku/workflow/a9077099792d4391aea39028fdfcbb18.cwl b/.renku/workflow/a9077099792d4391aea39028fdfcbb18.cwl deleted file mode 100644 index 67bec4bac..000000000 --- a/.renku/workflow/a9077099792d4391aea39028fdfcbb18.cwl +++ /dev/null @@ -1,120 +0,0 @@ -class: Workflow -cwlVersion: v1.0 -hints: [] -inputs: - input_1: - default: out_folder - streamable: false - type: string - input_2: - default: data/covidtracking - streamable: false - type: string - input_3: - default: - class: File - path: ../../notebooks/process/download-covidtracking-data.ipynb - streamable: false - type: File - input_4: - default: runs/download-covidtracking-data.runs.ipynb - streamable: false - type: string - input_5: - default: states-metadata.json - streamable: false - type: string - input_6: - default: states-daily.json - streamable: false - type: string -outputs: - output_1: - outputSource: step_1/output_0 - streamable: false - type: File - output_3: - outputSource: step_1/output_1 - streamable: false - type: Directory -requirements: [] -steps: - step_1: - in: - input_1: input_1 - input_2: input_2 - input_3: input_3 - input_4: input_4 - out: - - output_0 - - output_1 - run: a17d560c41a54f5aa307ce5f3c5effe5_papermill.cwl - step_2: - in: - filename: input_5 - input_directory: step_1/output_1 - out: - - output_file - run: - arguments: [] - baseCommand: - - 'true' - class: CommandLineTool - cwlVersion: v1.0 - hints: [] - inputs: - filename: - default: states-metadata.json - streamable: false - type: string - input_directory: - streamable: false - type: Directory - outputs: - output_file: - outputBinding: - glob: $(inputs.filename) - streamable: false - type: File - permanentFailCodes: [] - requirements: - - &id001 - class: InlineJavascriptRequirement - - &id002 - class: InitialWorkDirRequirement - listing: $(inputs.input_directory.listing) - successCodes: [] - temporaryFailCodes: [] - step_3: - in: - filename: input_6 - input_directory: step_1/output_1 - out: - - output_file - run: - arguments: [] - baseCommand: - - 'true' - class: CommandLineTool - cwlVersion: v1.0 - hints: [] - inputs: - filename: - default: states-daily.json - streamable: false - type: string - input_directory: - streamable: false - type: Directory - outputs: - output_file: - outputBinding: - glob: $(inputs.filename) - streamable: false - type: File - permanentFailCodes: [] - requirements: - - *id001 - - *id002 - successCodes: [] - temporaryFailCodes: [] diff --git a/.renku/workflow/e8b5348b63cc4542a0fdd26d0eecd6c2_migrated.yaml b/.renku/workflow/e8b5348b63cc4542a0fdd26d0eecd6c2_migrated.yaml new file mode 100644 index 000000000..7a42aa169 --- /dev/null +++ b/.renku/workflow/e8b5348b63cc4542a0fdd26d0eecd6c2_migrated.yaml @@ -0,0 +1,434 @@ +- '@id': https://github.com/swissdatasciencecenter/renku-python/tree/v0.10.4 + '@type': + - http://purl.org/wf4ever/wfprov#WorkflowEngine + - http://www.w3.org/ns/prov#SoftwareAgent + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': renku 0.10.4 +- '@id': https://github.com/swissdatasciencecenter/renku-python/tree/v0.15.1 + '@type': + - http://purl.org/wf4ever/wfprov#WorkflowEngine + - http://www.w3.org/ns/prov#SoftwareAgent + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': renku 0.15.1 +- '@id': https://localhost/activities/commit/c3eb34ce360662bc979d31e693adb8f298efb1fc + '@type': + - http://purl.org/wf4ever/wfprov#ProcessRun + - http://purl.org/wf4ever/wfprov#WorkflowRun + - http://www.w3.org/ns/prov#Activity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#comment: + - '@value': renku rerun data/covidtracking/states-metadata.json data/covidtracking/states-daily.json + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': .renku/workflow/e8b5348b63cc4542a0fdd26d0eecd6c2_migrated.yaml@c3eb34ce360662bc979d31e693adb8f298efb1fc + http://www.w3.org/ns/prov#atLocation: + - '@value': .renku/workflow/e8b5348b63cc4542a0fdd26d0eecd6c2_migrated.yaml + http://www.w3.org/ns/prov#endedAtTime: + - '@type': http://www.w3.org/2001/XMLSchema#dateTime + '@value': '2020-11-09T07:38:31+00:00' + http://www.w3.org/ns/prov#influenced: [] + http://www.w3.org/ns/prov#qualifiedAssociation: + - '@id': https://localhost/activities/commit/c3eb34ce360662bc979d31e693adb8f298efb1fc/association + http://www.w3.org/ns/prov#qualifiedUsage: + - '@id': https://localhost/activities/commit/c3eb34ce360662bc979d31e693adb8f298efb1fc/inputs/1 + http://www.w3.org/ns/prov#startedAtTime: + - '@type': http://www.w3.org/2001/XMLSchema#dateTime + '@value': '2020-11-09T07:38:31+00:00' + http://www.w3.org/ns/prov#wasAssociatedWith: + - '@id': mailto:beepbop@example.com + - '@id': https://github.com/swissdatasciencecenter/renku-python/tree/v0.15.1 + http://www.w3.org/ns/prov#wasInformedBy: + - '@id': https://localhost/activities/commit/0303a6b1b850c05eadf8e75b944386aaaa292581 +- '@id': https://localhost/activities/commit/c3eb34ce360662bc979d31e693adb8f298efb1fc/association + '@type': + - http://www.w3.org/ns/prov#Association + http://www.w3.org/ns/prov#agent: + - '@id': https://github.com/swissdatasciencecenter/renku-python/tree/v0.10.4 + http://www.w3.org/ns/prov#hadPlan: + - '@id': https://renkulab.io/runs/3060040a047eb118dbb3ff44892c6dca024d98f3 +- '@id': https://localhost/activities/commit/c3eb34ce360662bc979d31e693adb8f298efb1fc/inputs/1 + '@type': + - http://www.w3.org/ns/prov#Usage + http://www.w3.org/ns/prov#entity: + - '@id': https://renkulab.io/blob/d754df040a4bf8f7cb7ae6ed4151830f9bb0f520/notebooks/process/download-covidtracking-data.ipynb + http://www.w3.org/ns/prov#hadRole: + - '@value': steps/step_1/inputs/3 +- '@id': https://localhost/activities/commit/c3eb34ce360662bc979d31e693adb8f298efb1fc/steps/step_1 + '@type': + - http://purl.org/wf4ever/wfprov#ProcessRun + - http://www.w3.org/ns/prov#Activity + http://purl.org/wf4ever/wfprov#wasPartOfWorkflowRun: + - '@id': https://localhost/activities/commit/c3eb34ce360662bc979d31e693adb8f298efb1fc + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#comment: + - '@value': renku rerun data/covidtracking/states-metadata.json data/covidtracking/states-daily.json + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': .renku/workflow/e8b5348b63cc4542a0fdd26d0eecd6c2_migrated.yaml@c3eb34ce360662bc979d31e693adb8f298efb1fc + http://www.w3.org/ns/prov#atLocation: + - '@value': .renku/workflow/e8b5348b63cc4542a0fdd26d0eecd6c2_migrated.yaml + http://www.w3.org/ns/prov#endedAtTime: + - '@type': http://www.w3.org/2001/XMLSchema#dateTime + '@value': '2020-11-09T07:38:31+00:00' + http://www.w3.org/ns/prov#influenced: [] + http://www.w3.org/ns/prov#qualifiedAssociation: + - '@id': https://localhost/activities/commit/c3eb34ce360662bc979d31e693adb8f298efb1fc/steps/step_1/association + http://www.w3.org/ns/prov#qualifiedUsage: + - '@id': https://localhost/activities/commit/c3eb34ce360662bc979d31e693adb8f298efb1fc/steps/step_1/inputs/3 + http://www.w3.org/ns/prov#startedAtTime: + - '@type': http://www.w3.org/2001/XMLSchema#dateTime + '@value': '2020-11-09T07:38:31+00:00' + http://www.w3.org/ns/prov#wasAssociatedWith: + - '@id': mailto:beepbop@example.com + - '@id': https://github.com/swissdatasciencecenter/renku-python/tree/v0.15.1 + http://www.w3.org/ns/prov#wasInformedBy: + - '@id': https://localhost/activities/commit/0303a6b1b850c05eadf8e75b944386aaaa292581 + https://swissdatasciencecenter.github.io/renku-ontology#hasRunParameter: [] +- '@id': https://localhost/activities/commit/c3eb34ce360662bc979d31e693adb8f298efb1fc/steps/step_1/association + '@type': + - http://www.w3.org/ns/prov#Association + http://www.w3.org/ns/prov#agent: + - '@id': https://github.com/swissdatasciencecenter/renku-python/tree/v0.10.4 + http://www.w3.org/ns/prov#hadPlan: + - '@id': https://renkulab.io/runs/93ec475983326d48e5084eee96cb639f624f672f +- '@id': https://localhost/activities/commit/c3eb34ce360662bc979d31e693adb8f298efb1fc/steps/step_1/inputs/3 + '@type': + - http://www.w3.org/ns/prov#Usage + http://www.w3.org/ns/prov#entity: + - '@id': https://renkulab.io/blob/d754df040a4bf8f7cb7ae6ed4151830f9bb0f520/notebooks/process/download-covidtracking-data.ipynb + http://www.w3.org/ns/prov#hadRole: + - '@value': inputs/3 +- '@id': https://localhost/activities/commit/c3eb34ce360662bc979d31e693adb8f298efb1fc/steps/step_1/outputs/2 + '@type': + - http://www.w3.org/ns/prov#Generation + http://www.w3.org/ns/prov#activity: + - '@id': https://localhost/activities/commit/c3eb34ce360662bc979d31e693adb8f298efb1fc/steps/step_1 + - '@id': https://localhost/activities/commit/c3eb34ce360662bc979d31e693adb8f298efb1fc + http://www.w3.org/ns/prov#hadRole: + - '@value': outputs/2 +- '@id': https://localhost/activities/commit/c3eb34ce360662bc979d31e693adb8f298efb1fc/steps/step_1/outputs/4 + '@type': + - http://www.w3.org/ns/prov#Generation + http://www.w3.org/ns/prov#activity: + - '@id': https://localhost/activities/commit/c3eb34ce360662bc979d31e693adb8f298efb1fc/steps/step_1 + - '@id': https://localhost/activities/commit/c3eb34ce360662bc979d31e693adb8f298efb1fc + http://www.w3.org/ns/prov#hadRole: + - '@value': outputs/4 +- '@id': https://localhost/activities/commit/c3eb34ce360662bc979d31e693adb8f298efb1fc/steps/step_1/tree/data/covidtracking/states-daily.json + '@type': + - http://www.w3.org/ns/prov#Generation + http://www.w3.org/ns/prov#activity: + - '@id': https://localhost/activities/commit/c3eb34ce360662bc979d31e693adb8f298efb1fc +- '@id': https://localhost/activities/commit/c3eb34ce360662bc979d31e693adb8f298efb1fc/steps/step_1/tree/data/covidtracking/states-metadata.json + '@type': + - http://www.w3.org/ns/prov#Generation + http://www.w3.org/ns/prov#activity: + - '@id': https://localhost/activities/commit/c3eb34ce360662bc979d31e693adb8f298efb1fc +- '@id': https://renkulab.io/blob/c3eb34ce360662bc979d31e693adb8f298efb1fc/data/covidtracking + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Collection + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': data/covidtracking@c3eb34ce360662bc979d31e693adb8f298efb1fc + http://www.w3.org/ns/prov#atLocation: + - '@value': data/covidtracking + http://www.w3.org/ns/prov#hadMember: + - '@id': https://renkulab.io/blob/c3eb34ce360662bc979d31e693adb8f298efb1fc/data/covidtracking/states-daily.json + - '@id': https://renkulab.io/blob/c3eb34ce360662bc979d31e693adb8f298efb1fc/data/covidtracking/states-metadata.json + http://www.w3.org/ns/prov#qualifiedGeneration: + - '@id': https://localhost/activities/commit/c3eb34ce360662bc979d31e693adb8f298efb1fc/steps/step_1/outputs/2 +- '@id': https://renkulab.io/blob/c3eb34ce360662bc979d31e693adb8f298efb1fc/data/covidtracking/states-daily.json + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': data/covidtracking/states-daily.json@c3eb34ce360662bc979d31e693adb8f298efb1fc + http://www.w3.org/ns/prov#atLocation: + - '@value': data/covidtracking/states-daily.json + http://www.w3.org/ns/prov#qualifiedGeneration: + - '@id': https://localhost/activities/commit/c3eb34ce360662bc979d31e693adb8f298efb1fc/steps/step_1/tree/data/covidtracking/states-daily.json +- '@id': https://renkulab.io/blob/c3eb34ce360662bc979d31e693adb8f298efb1fc/data/covidtracking/states-metadata.json + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': data/covidtracking/states-metadata.json@c3eb34ce360662bc979d31e693adb8f298efb1fc + http://www.w3.org/ns/prov#atLocation: + - '@value': data/covidtracking/states-metadata.json + http://www.w3.org/ns/prov#qualifiedGeneration: + - '@id': https://localhost/activities/commit/c3eb34ce360662bc979d31e693adb8f298efb1fc/steps/step_1/tree/data/covidtracking/states-metadata.json +- '@id': https://renkulab.io/blob/c3eb34ce360662bc979d31e693adb8f298efb1fc/runs/download-covidtracking-data.runs.ipynb + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': runs/download-covidtracking-data.runs.ipynb@c3eb34ce360662bc979d31e693adb8f298efb1fc + http://www.w3.org/ns/prov#atLocation: + - '@value': runs/download-covidtracking-data.runs.ipynb + http://www.w3.org/ns/prov#qualifiedGeneration: + - '@id': https://localhost/activities/commit/c3eb34ce360662bc979d31e693adb8f298efb1fc/steps/step_1/outputs/4 +- '@id': https://renkulab.io/blob/ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658/data/covidtracking + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Collection + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': data/covidtracking@ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658 + http://www.w3.org/ns/prov#atLocation: + - '@value': data/covidtracking + http://www.w3.org/ns/prov#hadMember: + - '@id': https://renkulab.io/blob/ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658/data/covidtracking/states-daily.json + - '@id': https://renkulab.io/blob/ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658/data/covidtracking/states-metadata.json +- '@id': https://renkulab.io/blob/ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658/data/covidtracking/states-daily.json + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': data/covidtracking/states-daily.json@ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658 + http://www.w3.org/ns/prov#atLocation: + - '@value': data/covidtracking/states-daily.json +- '@id': https://renkulab.io/blob/ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658/data/covidtracking/states-metadata.json + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': data/covidtracking/states-metadata.json@ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658 + http://www.w3.org/ns/prov#atLocation: + - '@value': data/covidtracking/states-metadata.json +- '@id': https://renkulab.io/blob/ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658/runs/download-covidtracking-data.runs.ipynb + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': runs/download-covidtracking-data.runs.ipynb@ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658 + http://www.w3.org/ns/prov#atLocation: + - '@value': runs/download-covidtracking-data.runs.ipynb +- '@id': https://renkulab.io/blob/d754df040a4bf8f7cb7ae6ed4151830f9bb0f520/notebooks/process/download-covidtracking-data.ipynb + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': notebooks/process/download-covidtracking-data.ipynb@d754df040a4bf8f7cb7ae6ed4151830f9bb0f520 + http://www.w3.org/ns/prov#atLocation: + - '@value': notebooks/process/download-covidtracking-data.ipynb +- '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + '@type': + - http://schema.org/Project + - http://www.w3.org/ns/prov#Location + http://schema.org/agent: + - '@value': pre-0.11.0 + http://schema.org/creator: + - '@id': mailto:cramakri@ethz.ch + http://schema.org/dateCreated: + - '@value': '2020-03-11T21:43:12.736000+00:00' + http://schema.org/name: + - '@value': covid-19-dashboard + http://schema.org/schemaVersion: + - '@value': '4' + https://swissdatasciencecenter.github.io/renku-ontology#automatedTemplateUpdate: + - '@value': false + https://swissdatasciencecenter.github.io/renku-ontology#immutableTemplateFiles: [] +- '@id': https://renkulab.io/runs/3060040a047eb118dbb3ff44892c6dca024d98f3 + '@type': + - http://www.w3.org/ns/prov#Entity + - http://www.w3.org/ns/prov#Plan + - https://swissdatasciencecenter.github.io/renku-ontology#Run + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://schema.org/keywords: [] + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': .renku/workflow/a9077099792d4391aea39028fdfcbb18.cwl@c3eb34ce360662bc979d31e693adb8f298efb1fc + http://www.w3.org/ns/prov#atLocation: + - '@value': .renku/workflow/e8b5348b63cc4542a0fdd26d0eecd6c2_migrated.yaml + https://swissdatasciencecenter.github.io/renku-ontology#hasArguments: [] + https://swissdatasciencecenter.github.io/renku-ontology#hasInputs: + - '@id': https://renkulab.io/runs/3060040a047eb118dbb3ff44892c6dca024d98f3/steps/step_1/inputs/3 + https://swissdatasciencecenter.github.io/renku-ontology#hasOutputs: + - '@id': https://renkulab.io/runs/3060040a047eb118dbb3ff44892c6dca024d98f3/steps/step_1/outputs/4 + - '@id': https://renkulab.io/runs/3060040a047eb118dbb3ff44892c6dca024d98f3/steps/step_1/outputs/2 + https://swissdatasciencecenter.github.io/renku-ontology#hasRunParameters: [] + https://swissdatasciencecenter.github.io/renku-ontology#hasSubprocess: + - '@id': https://renkulab.io/runs/3060040a047eb118dbb3ff44892c6dca024d98f3/subprocess/1 + https://swissdatasciencecenter.github.io/renku-ontology#successCodes: [] +- '@id': https://renkulab.io/runs/3060040a047eb118dbb3ff44892c6dca024d98f3/steps/step_1/inputs/3 + '@type': + - https://swissdatasciencecenter.github.io/renku-ontology#CommandInput + - https://swissdatasciencecenter.github.io/renku-ontology#CommandParameter + http://schema.org/defaultValue: + - '@value': notebooks/process/download-covidtracking-data.ipynb + http://schema.org/name: + - '@value': inject-paths-3 + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': Command Input "None" + https://swissdatasciencecenter.github.io/renku-ontology#consumes: + - '@id': https://renkulab.io/blob/d754df040a4bf8f7cb7ae6ed4151830f9bb0f520/notebooks/process/download-covidtracking-data.ipynb + https://swissdatasciencecenter.github.io/renku-ontology#position: + - '@value': 3 + https://swissdatasciencecenter.github.io/renku-ontology#prefix: + - '@value': '--inject-paths ' +- '@id': https://renkulab.io/runs/3060040a047eb118dbb3ff44892c6dca024d98f3/steps/step_1/outputs/2 + '@type': + - https://swissdatasciencecenter.github.io/renku-ontology#CommandOutput + - https://swissdatasciencecenter.github.io/renku-ontology#CommandParameter + http://schema.org/defaultValue: + - '@value': data/covidtracking + http://schema.org/name: + - '@value': output-2 + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': Command Output "None" + https://swissdatasciencecenter.github.io/renku-ontology#createFolder: + - '@value': true + https://swissdatasciencecenter.github.io/renku-ontology#position: + - '@value': 2 + https://swissdatasciencecenter.github.io/renku-ontology#produces: + - '@id': https://renkulab.io/blob/ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658/data/covidtracking +- '@id': https://renkulab.io/runs/3060040a047eb118dbb3ff44892c6dca024d98f3/steps/step_1/outputs/4 + '@type': + - https://swissdatasciencecenter.github.io/renku-ontology#CommandOutput + - https://swissdatasciencecenter.github.io/renku-ontology#CommandParameter + http://schema.org/defaultValue: + - '@value': runs/download-covidtracking-data.runs.ipynb + http://schema.org/name: + - '@value': output-4 + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': Command Output "None" + https://swissdatasciencecenter.github.io/renku-ontology#createFolder: + - '@value': true + https://swissdatasciencecenter.github.io/renku-ontology#position: + - '@value': 4 + https://swissdatasciencecenter.github.io/renku-ontology#produces: + - '@id': https://renkulab.io/blob/ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658/runs/download-covidtracking-data.runs.ipynb +- '@id': https://renkulab.io/runs/3060040a047eb118dbb3ff44892c6dca024d98f3/subprocess/1 + '@type': + - https://swissdatasciencecenter.github.io/renku-ontology#OrderedSubprocess + https://swissdatasciencecenter.github.io/renku-ontology#index: + - '@value': 1 + https://swissdatasciencecenter.github.io/renku-ontology#process: + - '@id': https://renkulab.io/runs/93ec475983326d48e5084eee96cb639f624f672f +- '@id': https://renkulab.io/runs/93ec475983326d48e5084eee96cb639f624f672f + '@type': + - http://www.w3.org/ns/prov#Entity + - http://www.w3.org/ns/prov#Plan + - https://swissdatasciencecenter.github.io/renku-ontology#Run + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://schema.org/keywords: [] + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': .renku/workflow/a17d560c41a54f5aa307ce5f3c5effe5_papermill.cwl@ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658 + http://www.w3.org/ns/prov#atLocation: + - '@value': .renku/workflow/a17d560c41a54f5aa307ce5f3c5effe5_papermill.cwl + https://swissdatasciencecenter.github.io/renku-ontology#command: + - '@value': papermill + https://swissdatasciencecenter.github.io/renku-ontology#hasArguments: + - '@id': https://renkulab.io/runs/93ec475983326d48e5084eee96cb639f624f672f/arguments/1 + https://swissdatasciencecenter.github.io/renku-ontology#hasInputs: + - '@id': https://renkulab.io/runs/93ec475983326d48e5084eee96cb639f624f672f/inputs/3 + https://swissdatasciencecenter.github.io/renku-ontology#hasOutputs: + - '@id': https://renkulab.io/runs/93ec475983326d48e5084eee96cb639f624f672f/outputs/4 + - '@id': https://renkulab.io/runs/93ec475983326d48e5084eee96cb639f624f672f/outputs/2 + https://swissdatasciencecenter.github.io/renku-ontology#hasRunParameters: [] + https://swissdatasciencecenter.github.io/renku-ontology#hasSubprocess: [] + https://swissdatasciencecenter.github.io/renku-ontology#successCodes: [] +- '@id': https://renkulab.io/runs/93ec475983326d48e5084eee96cb639f624f672f/arguments/1 + '@type': + - https://swissdatasciencecenter.github.io/renku-ontology#CommandArgument + - https://swissdatasciencecenter.github.io/renku-ontology#CommandParameter + http://schema.org/defaultValue: + - '@value': out_folder + http://schema.org/name: + - '@value': p-1 + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': Command Argument "None" + https://swissdatasciencecenter.github.io/renku-ontology#position: + - '@value': 1 + https://swissdatasciencecenter.github.io/renku-ontology#prefix: + - '@value': '-p ' + https://swissdatasciencecenter.github.io/renku-ontology#value: + - '@value': out_folder +- '@id': https://renkulab.io/runs/93ec475983326d48e5084eee96cb639f624f672f/inputs/3 + '@type': + - https://swissdatasciencecenter.github.io/renku-ontology#CommandInput + - https://swissdatasciencecenter.github.io/renku-ontology#CommandParameter + http://schema.org/defaultValue: + - '@value': notebooks/process/download-covidtracking-data.ipynb + http://schema.org/name: + - '@value': inject-paths-3 + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': Command Input "None" + https://swissdatasciencecenter.github.io/renku-ontology#consumes: + - '@id': https://renkulab.io/blob/d754df040a4bf8f7cb7ae6ed4151830f9bb0f520/notebooks/process/download-covidtracking-data.ipynb + https://swissdatasciencecenter.github.io/renku-ontology#position: + - '@value': 3 + https://swissdatasciencecenter.github.io/renku-ontology#prefix: + - '@value': '--inject-paths ' +- '@id': https://renkulab.io/runs/93ec475983326d48e5084eee96cb639f624f672f/outputs/2 + '@type': + - https://swissdatasciencecenter.github.io/renku-ontology#CommandOutput + - https://swissdatasciencecenter.github.io/renku-ontology#CommandParameter + http://schema.org/defaultValue: + - '@value': data/covidtracking + http://schema.org/name: + - '@value': output-2 + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': Command Output "None" + https://swissdatasciencecenter.github.io/renku-ontology#createFolder: + - '@value': true + https://swissdatasciencecenter.github.io/renku-ontology#position: + - '@value': 2 + https://swissdatasciencecenter.github.io/renku-ontology#produces: + - '@id': https://renkulab.io/blob/ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658/data/covidtracking +- '@id': https://renkulab.io/runs/93ec475983326d48e5084eee96cb639f624f672f/outputs/4 + '@type': + - https://swissdatasciencecenter.github.io/renku-ontology#CommandOutput + - https://swissdatasciencecenter.github.io/renku-ontology#CommandParameter + http://schema.org/defaultValue: + - '@value': runs/download-covidtracking-data.runs.ipynb + http://schema.org/name: + - '@value': output-4 + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': Command Output "None" + https://swissdatasciencecenter.github.io/renku-ontology#createFolder: + - '@value': true + https://swissdatasciencecenter.github.io/renku-ontology#position: + - '@value': 4 + https://swissdatasciencecenter.github.io/renku-ontology#produces: + - '@id': https://renkulab.io/blob/ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658/runs/download-covidtracking-data.runs.ipynb +- '@id': mailto:beepbop@example.com + '@type': + - http://schema.org/Person + - http://www.w3.org/ns/prov#Person + http://schema.org/email: + - '@value': beepbop@example.com + http://schema.org/name: + - '@value': CR (covid cron) + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': CR (covid cron) +- '@id': mailto:cramakri@ethz.ch + '@type': + - http://schema.org/Person + - http://www.w3.org/ns/prov#Person + http://schema.org/email: + - '@value': cramakri@ethz.ch + http://schema.org/name: + - '@value': Chandrasekhar Ramakrishnan + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': Chandrasekhar Ramakrishnan -- GitLab