diff --git a/.renku/activity_index.yaml b/.renku/activity_index.yaml index 3ca59fb62e68b8fa4c70ee7d66bc3652f7d2afc0..28fe4fa2bb95c9fe59f362f6b8e753e3eb871320 100644 --- a/.renku/activity_index.yaml +++ b/.renku/activity_index.yaml @@ -211,6 +211,8 @@ data/covidtracking: - .renku/workflow/a74aa98f8cd6461182a9fb9ae37e4f9c_migrated.yaml 3f43a78bb11de150f07b31993b1a1cbb709d8862: - .renku/workflow/60c51114109a49c8b83659d494e23793_migrated.yaml + 4115de15810b2cc7c4778cdeeabafab377f62083: + - .renku/workflow/6b1754b6f92246c39b91c8661759c401_migrated.yaml 41c76b332245f6091432693ac4926ef010606ce0: - .renku/workflow/850ffc358ee14faba006f43075fb13e3_migrated.yaml 424be4e2c90a204b2a0c7de126789dc50f2e4814: @@ -713,6 +715,8 @@ data/covidtracking/states-daily.json: - .renku/workflow/a74aa98f8cd6461182a9fb9ae37e4f9c_migrated.yaml 3f43a78bb11de150f07b31993b1a1cbb709d8862: - .renku/workflow/60c51114109a49c8b83659d494e23793_migrated.yaml + 4115de15810b2cc7c4778cdeeabafab377f62083: + - .renku/workflow/6b1754b6f92246c39b91c8661759c401_migrated.yaml 41c76b332245f6091432693ac4926ef010606ce0: - .renku/workflow/850ffc358ee14faba006f43075fb13e3_migrated.yaml 424be4e2c90a204b2a0c7de126789dc50f2e4814: @@ -1210,6 +1214,8 @@ data/covidtracking/states-metadata.json: - .renku/workflow/a74aa98f8cd6461182a9fb9ae37e4f9c_migrated.yaml 3f43a78bb11de150f07b31993b1a1cbb709d8862: - .renku/workflow/60c51114109a49c8b83659d494e23793_migrated.yaml + 4115de15810b2cc7c4778cdeeabafab377f62083: + - .renku/workflow/6b1754b6f92246c39b91c8661759c401_migrated.yaml 41c76b332245f6091432693ac4926ef010606ce0: - .renku/workflow/850ffc358ee14faba006f43075fb13e3_migrated.yaml 424be4e2c90a204b2a0c7de126789dc50f2e4814: @@ -2700,6 +2706,8 @@ runs/download-covidtracking-data.runs.ipynb: - .renku/workflow/a74aa98f8cd6461182a9fb9ae37e4f9c_migrated.yaml 3f43a78bb11de150f07b31993b1a1cbb709d8862: - .renku/workflow/60c51114109a49c8b83659d494e23793_migrated.yaml + 4115de15810b2cc7c4778cdeeabafab377f62083: + - .renku/workflow/6b1754b6f92246c39b91c8661759c401_migrated.yaml 41c76b332245f6091432693ac4926ef010606ce0: - .renku/workflow/850ffc358ee14faba006f43075fb13e3_migrated.yaml 424be4e2c90a204b2a0c7de126789dc50f2e4814: diff --git a/.renku/workflow/6b1754b6f92246c39b91c8661759c401_migrated.yaml b/.renku/workflow/6b1754b6f92246c39b91c8661759c401_migrated.yaml new file mode 100644 index 0000000000000000000000000000000000000000..a5aeace71e04bc21b81991400b1a2b8d47e2517c --- /dev/null +++ b/.renku/workflow/6b1754b6f92246c39b91c8661759c401_migrated.yaml @@ -0,0 +1,434 @@ +- '@id': https://github.com/swissdatasciencecenter/renku-python/tree/v0.10.4 + '@type': + - http://purl.org/wf4ever/wfprov#WorkflowEngine + - http://www.w3.org/ns/prov#SoftwareAgent + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': renku 0.10.4 +- '@id': https://github.com/swissdatasciencecenter/renku-python/tree/v0.15.1 + '@type': + - http://purl.org/wf4ever/wfprov#WorkflowEngine + - http://www.w3.org/ns/prov#SoftwareAgent + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': renku 0.15.1 +- '@id': https://localhost/activities/commit/4115de15810b2cc7c4778cdeeabafab377f62083 + '@type': + - http://purl.org/wf4ever/wfprov#ProcessRun + - http://purl.org/wf4ever/wfprov#WorkflowRun + - http://www.w3.org/ns/prov#Activity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#comment: + - '@value': renku rerun data/covidtracking/states-metadata.json data/covidtracking/states-daily.json + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': .renku/workflow/6b1754b6f92246c39b91c8661759c401_migrated.yaml@4115de15810b2cc7c4778cdeeabafab377f62083 + http://www.w3.org/ns/prov#atLocation: + - '@value': .renku/workflow/6b1754b6f92246c39b91c8661759c401_migrated.yaml + http://www.w3.org/ns/prov#endedAtTime: + - '@type': http://www.w3.org/2001/XMLSchema#dateTime + '@value': '2020-12-14T07:38:58+00:00' + http://www.w3.org/ns/prov#influenced: [] + http://www.w3.org/ns/prov#qualifiedAssociation: + - '@id': https://localhost/activities/commit/4115de15810b2cc7c4778cdeeabafab377f62083/association + http://www.w3.org/ns/prov#qualifiedUsage: + - '@id': https://localhost/activities/commit/4115de15810b2cc7c4778cdeeabafab377f62083/inputs/1 + http://www.w3.org/ns/prov#startedAtTime: + - '@type': http://www.w3.org/2001/XMLSchema#dateTime + '@value': '2020-12-14T07:38:58+00:00' + http://www.w3.org/ns/prov#wasAssociatedWith: + - '@id': mailto:beepbop@example.com + - '@id': https://github.com/swissdatasciencecenter/renku-python/tree/v0.15.1 + http://www.w3.org/ns/prov#wasInformedBy: + - '@id': https://localhost/activities/commit/c0378650b673a811f3344dc9abe3a2586aef9768 +- '@id': https://localhost/activities/commit/4115de15810b2cc7c4778cdeeabafab377f62083/association + '@type': + - http://www.w3.org/ns/prov#Association + http://www.w3.org/ns/prov#agent: + - '@id': https://github.com/swissdatasciencecenter/renku-python/tree/v0.10.4 + http://www.w3.org/ns/prov#hadPlan: + - '@id': https://renkulab.io/runs/a6de6dc10493005143e583301b9a457b7ea54e59 +- '@id': https://localhost/activities/commit/4115de15810b2cc7c4778cdeeabafab377f62083/inputs/1 + '@type': + - http://www.w3.org/ns/prov#Usage + http://www.w3.org/ns/prov#entity: + - '@id': https://renkulab.io/blob/d754df040a4bf8f7cb7ae6ed4151830f9bb0f520/notebooks/process/download-covidtracking-data.ipynb + http://www.w3.org/ns/prov#hadRole: + - '@value': steps/step_1/inputs/3 +- '@id': https://localhost/activities/commit/4115de15810b2cc7c4778cdeeabafab377f62083/steps/step_1 + '@type': + - http://purl.org/wf4ever/wfprov#ProcessRun + - http://www.w3.org/ns/prov#Activity + http://purl.org/wf4ever/wfprov#wasPartOfWorkflowRun: + - '@id': https://localhost/activities/commit/4115de15810b2cc7c4778cdeeabafab377f62083 + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#comment: + - '@value': renku rerun data/covidtracking/states-metadata.json data/covidtracking/states-daily.json + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': .renku/workflow/6b1754b6f92246c39b91c8661759c401_migrated.yaml@4115de15810b2cc7c4778cdeeabafab377f62083 + http://www.w3.org/ns/prov#atLocation: + - '@value': .renku/workflow/6b1754b6f92246c39b91c8661759c401_migrated.yaml + http://www.w3.org/ns/prov#endedAtTime: + - '@type': http://www.w3.org/2001/XMLSchema#dateTime + '@value': '2020-12-14T07:38:58+00:00' + http://www.w3.org/ns/prov#influenced: [] + http://www.w3.org/ns/prov#qualifiedAssociation: + - '@id': https://localhost/activities/commit/4115de15810b2cc7c4778cdeeabafab377f62083/steps/step_1/association + http://www.w3.org/ns/prov#qualifiedUsage: + - '@id': https://localhost/activities/commit/4115de15810b2cc7c4778cdeeabafab377f62083/steps/step_1/inputs/3 + http://www.w3.org/ns/prov#startedAtTime: + - '@type': http://www.w3.org/2001/XMLSchema#dateTime + '@value': '2020-12-14T07:38:58+00:00' + http://www.w3.org/ns/prov#wasAssociatedWith: + - '@id': mailto:beepbop@example.com + - '@id': https://github.com/swissdatasciencecenter/renku-python/tree/v0.15.1 + http://www.w3.org/ns/prov#wasInformedBy: + - '@id': https://localhost/activities/commit/c0378650b673a811f3344dc9abe3a2586aef9768 + https://swissdatasciencecenter.github.io/renku-ontology#hasRunParameter: [] +- '@id': https://localhost/activities/commit/4115de15810b2cc7c4778cdeeabafab377f62083/steps/step_1/association + '@type': + - http://www.w3.org/ns/prov#Association + http://www.w3.org/ns/prov#agent: + - '@id': https://github.com/swissdatasciencecenter/renku-python/tree/v0.10.4 + http://www.w3.org/ns/prov#hadPlan: + - '@id': https://renkulab.io/runs/4cf8064cfc965369ff2aa3d93d29a468a3d0b1ed +- '@id': https://localhost/activities/commit/4115de15810b2cc7c4778cdeeabafab377f62083/steps/step_1/inputs/3 + '@type': + - http://www.w3.org/ns/prov#Usage + http://www.w3.org/ns/prov#entity: + - '@id': https://renkulab.io/blob/d754df040a4bf8f7cb7ae6ed4151830f9bb0f520/notebooks/process/download-covidtracking-data.ipynb + http://www.w3.org/ns/prov#hadRole: + - '@value': inputs/3 +- '@id': https://localhost/activities/commit/4115de15810b2cc7c4778cdeeabafab377f62083/steps/step_1/outputs/2 + '@type': + - http://www.w3.org/ns/prov#Generation + http://www.w3.org/ns/prov#activity: + - '@id': https://localhost/activities/commit/4115de15810b2cc7c4778cdeeabafab377f62083/steps/step_1 + - '@id': https://localhost/activities/commit/4115de15810b2cc7c4778cdeeabafab377f62083 + http://www.w3.org/ns/prov#hadRole: + - '@value': outputs/2 +- '@id': https://localhost/activities/commit/4115de15810b2cc7c4778cdeeabafab377f62083/steps/step_1/outputs/4 + '@type': + - http://www.w3.org/ns/prov#Generation + http://www.w3.org/ns/prov#activity: + - '@id': https://localhost/activities/commit/4115de15810b2cc7c4778cdeeabafab377f62083/steps/step_1 + - '@id': https://localhost/activities/commit/4115de15810b2cc7c4778cdeeabafab377f62083 + http://www.w3.org/ns/prov#hadRole: + - '@value': outputs/4 +- '@id': https://localhost/activities/commit/4115de15810b2cc7c4778cdeeabafab377f62083/steps/step_1/tree/data/covidtracking/states-daily.json + '@type': + - http://www.w3.org/ns/prov#Generation + http://www.w3.org/ns/prov#activity: + - '@id': https://localhost/activities/commit/4115de15810b2cc7c4778cdeeabafab377f62083 +- '@id': https://localhost/activities/commit/4115de15810b2cc7c4778cdeeabafab377f62083/steps/step_1/tree/data/covidtracking/states-metadata.json + '@type': + - http://www.w3.org/ns/prov#Generation + http://www.w3.org/ns/prov#activity: + - '@id': https://localhost/activities/commit/4115de15810b2cc7c4778cdeeabafab377f62083 +- '@id': https://renkulab.io/blob/4115de15810b2cc7c4778cdeeabafab377f62083/data/covidtracking + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Collection + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': data/covidtracking@4115de15810b2cc7c4778cdeeabafab377f62083 + http://www.w3.org/ns/prov#atLocation: + - '@value': data/covidtracking + http://www.w3.org/ns/prov#hadMember: + - '@id': https://renkulab.io/blob/4115de15810b2cc7c4778cdeeabafab377f62083/data/covidtracking/states-daily.json + - '@id': https://renkulab.io/blob/4115de15810b2cc7c4778cdeeabafab377f62083/data/covidtracking/states-metadata.json + http://www.w3.org/ns/prov#qualifiedGeneration: + - '@id': https://localhost/activities/commit/4115de15810b2cc7c4778cdeeabafab377f62083/steps/step_1/outputs/2 +- '@id': https://renkulab.io/blob/4115de15810b2cc7c4778cdeeabafab377f62083/data/covidtracking/states-daily.json + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': data/covidtracking/states-daily.json@4115de15810b2cc7c4778cdeeabafab377f62083 + http://www.w3.org/ns/prov#atLocation: + - '@value': data/covidtracking/states-daily.json + http://www.w3.org/ns/prov#qualifiedGeneration: + - '@id': https://localhost/activities/commit/4115de15810b2cc7c4778cdeeabafab377f62083/steps/step_1/tree/data/covidtracking/states-daily.json +- '@id': https://renkulab.io/blob/4115de15810b2cc7c4778cdeeabafab377f62083/data/covidtracking/states-metadata.json + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': data/covidtracking/states-metadata.json@4115de15810b2cc7c4778cdeeabafab377f62083 + http://www.w3.org/ns/prov#atLocation: + - '@value': data/covidtracking/states-metadata.json + http://www.w3.org/ns/prov#qualifiedGeneration: + - '@id': https://localhost/activities/commit/4115de15810b2cc7c4778cdeeabafab377f62083/steps/step_1/tree/data/covidtracking/states-metadata.json +- '@id': https://renkulab.io/blob/4115de15810b2cc7c4778cdeeabafab377f62083/runs/download-covidtracking-data.runs.ipynb + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': runs/download-covidtracking-data.runs.ipynb@4115de15810b2cc7c4778cdeeabafab377f62083 + http://www.w3.org/ns/prov#atLocation: + - '@value': runs/download-covidtracking-data.runs.ipynb + http://www.w3.org/ns/prov#qualifiedGeneration: + - '@id': https://localhost/activities/commit/4115de15810b2cc7c4778cdeeabafab377f62083/steps/step_1/outputs/4 +- '@id': https://renkulab.io/blob/ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658/data/covidtracking + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Collection + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': data/covidtracking@ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658 + http://www.w3.org/ns/prov#atLocation: + - '@value': data/covidtracking + http://www.w3.org/ns/prov#hadMember: + - '@id': https://renkulab.io/blob/ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658/data/covidtracking/states-daily.json + - '@id': https://renkulab.io/blob/ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658/data/covidtracking/states-metadata.json +- '@id': https://renkulab.io/blob/ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658/data/covidtracking/states-daily.json + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': data/covidtracking/states-daily.json@ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658 + http://www.w3.org/ns/prov#atLocation: + - '@value': data/covidtracking/states-daily.json +- '@id': https://renkulab.io/blob/ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658/data/covidtracking/states-metadata.json + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': data/covidtracking/states-metadata.json@ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658 + http://www.w3.org/ns/prov#atLocation: + - '@value': data/covidtracking/states-metadata.json +- '@id': https://renkulab.io/blob/ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658/runs/download-covidtracking-data.runs.ipynb + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': runs/download-covidtracking-data.runs.ipynb@ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658 + http://www.w3.org/ns/prov#atLocation: + - '@value': runs/download-covidtracking-data.runs.ipynb +- '@id': https://renkulab.io/blob/d754df040a4bf8f7cb7ae6ed4151830f9bb0f520/notebooks/process/download-covidtracking-data.ipynb + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': notebooks/process/download-covidtracking-data.ipynb@d754df040a4bf8f7cb7ae6ed4151830f9bb0f520 + http://www.w3.org/ns/prov#atLocation: + - '@value': notebooks/process/download-covidtracking-data.ipynb +- '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + '@type': + - http://schema.org/Project + - http://www.w3.org/ns/prov#Location + http://schema.org/agent: + - '@value': pre-0.11.0 + http://schema.org/creator: + - '@id': mailto:cramakri@ethz.ch + http://schema.org/dateCreated: + - '@value': '2020-03-11T21:43:12.736000+00:00' + http://schema.org/name: + - '@value': covid-19-dashboard + http://schema.org/schemaVersion: + - '@value': '4' + https://swissdatasciencecenter.github.io/renku-ontology#automatedTemplateUpdate: + - '@value': false + https://swissdatasciencecenter.github.io/renku-ontology#immutableTemplateFiles: [] +- '@id': https://renkulab.io/runs/4cf8064cfc965369ff2aa3d93d29a468a3d0b1ed + '@type': + - http://www.w3.org/ns/prov#Entity + - http://www.w3.org/ns/prov#Plan + - https://swissdatasciencecenter.github.io/renku-ontology#Run + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://schema.org/keywords: [] + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': .renku/workflow/a17d560c41a54f5aa307ce5f3c5effe5_papermill.cwl@ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658 + http://www.w3.org/ns/prov#atLocation: + - '@value': .renku/workflow/a17d560c41a54f5aa307ce5f3c5effe5_papermill.cwl + https://swissdatasciencecenter.github.io/renku-ontology#command: + - '@value': papermill + https://swissdatasciencecenter.github.io/renku-ontology#hasArguments: + - '@id': https://renkulab.io/runs/4cf8064cfc965369ff2aa3d93d29a468a3d0b1ed/arguments/1 + https://swissdatasciencecenter.github.io/renku-ontology#hasInputs: + - '@id': https://renkulab.io/runs/4cf8064cfc965369ff2aa3d93d29a468a3d0b1ed/inputs/3 + https://swissdatasciencecenter.github.io/renku-ontology#hasOutputs: + - '@id': https://renkulab.io/runs/4cf8064cfc965369ff2aa3d93d29a468a3d0b1ed/outputs/4 + - '@id': https://renkulab.io/runs/4cf8064cfc965369ff2aa3d93d29a468a3d0b1ed/outputs/2 + https://swissdatasciencecenter.github.io/renku-ontology#hasRunParameters: [] + https://swissdatasciencecenter.github.io/renku-ontology#hasSubprocess: [] + https://swissdatasciencecenter.github.io/renku-ontology#successCodes: [] +- '@id': https://renkulab.io/runs/4cf8064cfc965369ff2aa3d93d29a468a3d0b1ed/arguments/1 + '@type': + - https://swissdatasciencecenter.github.io/renku-ontology#CommandArgument + - https://swissdatasciencecenter.github.io/renku-ontology#CommandParameter + http://schema.org/defaultValue: + - '@value': out_folder + http://schema.org/name: + - '@value': p-1 + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': Command Argument "None" + https://swissdatasciencecenter.github.io/renku-ontology#position: + - '@value': 1 + https://swissdatasciencecenter.github.io/renku-ontology#prefix: + - '@value': '-p ' + https://swissdatasciencecenter.github.io/renku-ontology#value: + - 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input_1: - default: states-metadata.json - streamable: false - type: string - input_2: - default: out_folder - streamable: false - type: string - input_3: - default: data/covidtracking - streamable: false - type: string - input_4: - default: - class: File - path: ../../notebooks/process/download-covidtracking-data.ipynb - streamable: false - type: File - input_5: - default: runs/download-covidtracking-data.runs.ipynb - streamable: false - type: string - input_6: - default: states-daily.json - streamable: false - type: string -outputs: - output_1: - outputSource: step_2/output_0 - streamable: false - type: File - output_3: - outputSource: step_2/output_1 - streamable: false - type: Directory -requirements: [] -steps: - step_1: - in: - filename: input_1 - input_directory: step_2/output_1 - out: - - output_file - run: - arguments: [] - baseCommand: - - 'true' - class: CommandLineTool - cwlVersion: v1.0 - hints: [] - inputs: - filename: - default: states-metadata.json - streamable: false - 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type: File - permanentFailCodes: [] - requirements: - - *id001 - - *id002 - successCodes: [] - temporaryFailCodes: []