From c98aca3f2312913e59a2d50c4021a9c120af0987 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Rok=20Ro=C5=A1kar?= <rok.roskar@sdsc.ethz.ch>
Date: Sun, 22 Nov 2020 23:50:01 +0000
Subject: [PATCH] chore: update ecdc notebook
---
notebooks/covid-19-ecdc.ipynb | 25 ++++++++++++++++++++++---
1 file changed, 22 insertions(+), 3 deletions(-)
diff --git a/notebooks/covid-19-ecdc.ipynb b/notebooks/covid-19-ecdc.ipynb
index f5f731bfb..31ca7cbfa 100644
--- a/notebooks/covid-19-ecdc.ipynb
+++ b/notebooks/covid-19-ecdc.ipynb
@@ -81,15 +81,33 @@
"metadata": {},
"outputs": [],
"source": [
- "nthresh=500000\n",
- "country_max_ser = df.set_index(['country_label', 'date'])['positive'].groupby(level='country_label').max()\n",
+ "df.columns"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": null,
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "nthresh=3000\n",
+ "country_max_ser = df.set_index(['country_label', 'date'])['positive_100k'].groupby(level='country_label').max()\n",
"countries_over_thresh = country_max_ser[country_max_ser>nthresh].index\n",
"countries_over_thresh = [c for c in countries_over_thresh if c not in set(['Andorra', 'Iceland', 'San Marino'])]\n",
"\n",
- "start_date = datetime.fromisoformat('2020-02-01')\n",
+ "start_date = datetime.fromisoformat('2020-08-01')\n",
"thresh_df = df.loc[(df.date > start_date) & (df.country_label.isin(countries_over_thresh))]"
]
},
+ {
+ "cell_type": "code",
+ "execution_count": null,
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "df.columns"
+ ]
+ },
{
"cell_type": "markdown",
"metadata": {},
@@ -144,6 +162,7 @@
" height=150,\n",
" width=150\n",
")\n",
+ "chart.resolve_scale(y='independent')\n",
"display(chart)\n",
"display(html_credits)"
]
--
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