diff --git a/.renku/activity_index.yaml b/.renku/activity_index.yaml index 799aaced9bc412350cd6bb6603dd6759c24143d7..f528571ee30e07ea211860b590c6d0f305b55fe6 100644 --- a/.renku/activity_index.yaml +++ b/.renku/activity_index.yaml @@ -225,6 +225,8 @@ data/covidtracking: - .renku/workflow/bd2fe65abcff4165834b580185928246_migrated.yaml 4597cd96a8c52ccc007d7402321877b4e9bf9a01: - .renku/workflow/4cc1b9a77a354e8f8219056e84a633f2_migrated.yaml + 46e3de8333eb35561a51d197fc399394280641ef: + - .renku/workflow/497cd4459fde4d798e9723d84afedb4e_migrated.yaml 47453a88e9f9dbbc5275eb26e07ab9bc2977b8c3: - .renku/workflow/db21913cec114a52ad19fab1b37aa483_migrated.yaml 48416bc931a3f0443cf2d3b159d3ff11a58723ab: @@ -711,6 +713,8 @@ data/covidtracking/states-daily.json: - .renku/workflow/bd2fe65abcff4165834b580185928246_migrated.yaml 4597cd96a8c52ccc007d7402321877b4e9bf9a01: - .renku/workflow/4cc1b9a77a354e8f8219056e84a633f2_migrated.yaml + 46e3de8333eb35561a51d197fc399394280641ef: + - .renku/workflow/497cd4459fde4d798e9723d84afedb4e_migrated.yaml 47453a88e9f9dbbc5275eb26e07ab9bc2977b8c3: - .renku/workflow/db21913cec114a52ad19fab1b37aa483_migrated.yaml 48416bc931a3f0443cf2d3b159d3ff11a58723ab: @@ -1192,6 +1196,8 @@ data/covidtracking/states-metadata.json: - .renku/workflow/bd2fe65abcff4165834b580185928246_migrated.yaml 4597cd96a8c52ccc007d7402321877b4e9bf9a01: - .renku/workflow/4cc1b9a77a354e8f8219056e84a633f2_migrated.yaml + 46e3de8333eb35561a51d197fc399394280641ef: + - .renku/workflow/497cd4459fde4d798e9723d84afedb4e_migrated.yaml 47453a88e9f9dbbc5275eb26e07ab9bc2977b8c3: - .renku/workflow/db21913cec114a52ad19fab1b37aa483_migrated.yaml 487ddcbff2122ea0731d7030a53a30e1f8253c64: @@ -2666,6 +2672,8 @@ runs/download-covidtracking-data.runs.ipynb: - .renku/workflow/bd2fe65abcff4165834b580185928246_migrated.yaml 4597cd96a8c52ccc007d7402321877b4e9bf9a01: - .renku/workflow/4cc1b9a77a354e8f8219056e84a633f2_migrated.yaml + 46e3de8333eb35561a51d197fc399394280641ef: + - .renku/workflow/497cd4459fde4d798e9723d84afedb4e_migrated.yaml 47453a88e9f9dbbc5275eb26e07ab9bc2977b8c3: - .renku/workflow/db21913cec114a52ad19fab1b37aa483_migrated.yaml 48416bc931a3f0443cf2d3b159d3ff11a58723ab: diff --git a/.renku/workflow/497cd4459fde4d798e9723d84afedb4e_migrated.yaml b/.renku/workflow/497cd4459fde4d798e9723d84afedb4e_migrated.yaml new file mode 100644 index 0000000000000000000000000000000000000000..92f59bcc6bc32141f245952e56a63205dbb18a08 --- /dev/null +++ b/.renku/workflow/497cd4459fde4d798e9723d84afedb4e_migrated.yaml @@ -0,0 +1,434 @@ +- '@id': https://github.com/swissdatasciencecenter/renku-python/tree/v0.10.4 + '@type': + - http://purl.org/wf4ever/wfprov#WorkflowEngine + - http://www.w3.org/ns/prov#SoftwareAgent + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': renku 0.10.4 +- '@id': https://github.com/swissdatasciencecenter/renku-python/tree/v0.15.1 + '@type': + - http://purl.org/wf4ever/wfprov#WorkflowEngine + - http://www.w3.org/ns/prov#SoftwareAgent + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': renku 0.15.1 +- '@id': https://localhost/activities/commit/46e3de8333eb35561a51d197fc399394280641ef + '@type': + - http://purl.org/wf4ever/wfprov#ProcessRun + - http://purl.org/wf4ever/wfprov#WorkflowRun + - http://www.w3.org/ns/prov#Activity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#comment: + - '@value': renku rerun data/covidtracking/states-metadata.json data/covidtracking/states-daily.json + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': .renku/workflow/497cd4459fde4d798e9723d84afedb4e_migrated.yaml@46e3de8333eb35561a51d197fc399394280641ef + http://www.w3.org/ns/prov#atLocation: + - '@value': .renku/workflow/497cd4459fde4d798e9723d84afedb4e_migrated.yaml + http://www.w3.org/ns/prov#endedAtTime: + - '@type': http://www.w3.org/2001/XMLSchema#dateTime + '@value': '2020-12-04T07:37:09+00:00' + http://www.w3.org/ns/prov#influenced: [] + http://www.w3.org/ns/prov#qualifiedAssociation: + - '@id': https://localhost/activities/commit/46e3de8333eb35561a51d197fc399394280641ef/association + http://www.w3.org/ns/prov#qualifiedUsage: + - '@id': https://localhost/activities/commit/46e3de8333eb35561a51d197fc399394280641ef/inputs/1 + http://www.w3.org/ns/prov#startedAtTime: + - '@type': http://www.w3.org/2001/XMLSchema#dateTime + '@value': '2020-12-04T07:37:09+00:00' + http://www.w3.org/ns/prov#wasAssociatedWith: + - '@id': mailto:beepbop@example.com + - '@id': https://github.com/swissdatasciencecenter/renku-python/tree/v0.15.1 + http://www.w3.org/ns/prov#wasInformedBy: + - '@id': https://localhost/activities/commit/2a900767932a10c7e847ac009f719ac8f0046625 +- '@id': https://localhost/activities/commit/46e3de8333eb35561a51d197fc399394280641ef/association + '@type': + - http://www.w3.org/ns/prov#Association + http://www.w3.org/ns/prov#agent: + - '@id': https://github.com/swissdatasciencecenter/renku-python/tree/v0.10.4 + http://www.w3.org/ns/prov#hadPlan: + - '@id': https://renkulab.io/runs/528771fde26f471b89d989e2cf8ad436e8ee337e +- '@id': https://localhost/activities/commit/46e3de8333eb35561a51d197fc399394280641ef/inputs/1 + '@type': + - http://www.w3.org/ns/prov#Usage + http://www.w3.org/ns/prov#entity: + - '@id': https://renkulab.io/blob/d754df040a4bf8f7cb7ae6ed4151830f9bb0f520/notebooks/process/download-covidtracking-data.ipynb + http://www.w3.org/ns/prov#hadRole: + - '@value': steps/step_1/inputs/3 +- '@id': https://localhost/activities/commit/46e3de8333eb35561a51d197fc399394280641ef/steps/step_1 + '@type': + - http://purl.org/wf4ever/wfprov#ProcessRun + - http://www.w3.org/ns/prov#Activity + http://purl.org/wf4ever/wfprov#wasPartOfWorkflowRun: + - '@id': https://localhost/activities/commit/46e3de8333eb35561a51d197fc399394280641ef + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#comment: + - '@value': renku rerun data/covidtracking/states-metadata.json data/covidtracking/states-daily.json + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': .renku/workflow/497cd4459fde4d798e9723d84afedb4e_migrated.yaml@46e3de8333eb35561a51d197fc399394280641ef + http://www.w3.org/ns/prov#atLocation: + - '@value': .renku/workflow/497cd4459fde4d798e9723d84afedb4e_migrated.yaml + http://www.w3.org/ns/prov#endedAtTime: + - '@type': http://www.w3.org/2001/XMLSchema#dateTime + '@value': '2020-12-04T07:37:09+00:00' + http://www.w3.org/ns/prov#influenced: [] + http://www.w3.org/ns/prov#qualifiedAssociation: + - '@id': https://localhost/activities/commit/46e3de8333eb35561a51d197fc399394280641ef/steps/step_1/association + http://www.w3.org/ns/prov#qualifiedUsage: + - '@id': https://localhost/activities/commit/46e3de8333eb35561a51d197fc399394280641ef/steps/step_1/inputs/3 + http://www.w3.org/ns/prov#startedAtTime: + - '@type': http://www.w3.org/2001/XMLSchema#dateTime + '@value': '2020-12-04T07:37:09+00:00' + http://www.w3.org/ns/prov#wasAssociatedWith: + - '@id': mailto:beepbop@example.com + - '@id': https://github.com/swissdatasciencecenter/renku-python/tree/v0.15.1 + http://www.w3.org/ns/prov#wasInformedBy: + - '@id': https://localhost/activities/commit/2a900767932a10c7e847ac009f719ac8f0046625 + https://swissdatasciencecenter.github.io/renku-ontology#hasRunParameter: [] +- '@id': https://localhost/activities/commit/46e3de8333eb35561a51d197fc399394280641ef/steps/step_1/association + '@type': + - http://www.w3.org/ns/prov#Association + http://www.w3.org/ns/prov#agent: + - '@id': https://github.com/swissdatasciencecenter/renku-python/tree/v0.10.4 + http://www.w3.org/ns/prov#hadPlan: + - '@id': https://renkulab.io/runs/5f41f61c9ffe4b88e0cdd20a7172b84c7adb240b +- '@id': https://localhost/activities/commit/46e3de8333eb35561a51d197fc399394280641ef/steps/step_1/inputs/3 + '@type': + - http://www.w3.org/ns/prov#Usage + http://www.w3.org/ns/prov#entity: + - '@id': https://renkulab.io/blob/d754df040a4bf8f7cb7ae6ed4151830f9bb0f520/notebooks/process/download-covidtracking-data.ipynb + http://www.w3.org/ns/prov#hadRole: + - '@value': inputs/3 +- '@id': https://localhost/activities/commit/46e3de8333eb35561a51d197fc399394280641ef/steps/step_1/outputs/2 + '@type': + - http://www.w3.org/ns/prov#Generation + http://www.w3.org/ns/prov#activity: + - '@id': https://localhost/activities/commit/46e3de8333eb35561a51d197fc399394280641ef/steps/step_1 + - '@id': https://localhost/activities/commit/46e3de8333eb35561a51d197fc399394280641ef + http://www.w3.org/ns/prov#hadRole: + - '@value': outputs/2 +- '@id': https://localhost/activities/commit/46e3de8333eb35561a51d197fc399394280641ef/steps/step_1/outputs/4 + '@type': + - http://www.w3.org/ns/prov#Generation + http://www.w3.org/ns/prov#activity: + - '@id': https://localhost/activities/commit/46e3de8333eb35561a51d197fc399394280641ef/steps/step_1 + - '@id': https://localhost/activities/commit/46e3de8333eb35561a51d197fc399394280641ef + http://www.w3.org/ns/prov#hadRole: + - '@value': outputs/4 +- '@id': https://localhost/activities/commit/46e3de8333eb35561a51d197fc399394280641ef/steps/step_1/tree/data/covidtracking/states-daily.json + '@type': + - http://www.w3.org/ns/prov#Generation + http://www.w3.org/ns/prov#activity: + - '@id': https://localhost/activities/commit/46e3de8333eb35561a51d197fc399394280641ef +- '@id': https://localhost/activities/commit/46e3de8333eb35561a51d197fc399394280641ef/steps/step_1/tree/data/covidtracking/states-metadata.json + '@type': + - http://www.w3.org/ns/prov#Generation + http://www.w3.org/ns/prov#activity: + - '@id': https://localhost/activities/commit/46e3de8333eb35561a51d197fc399394280641ef +- '@id': https://renkulab.io/blob/46e3de8333eb35561a51d197fc399394280641ef/data/covidtracking + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Collection + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': data/covidtracking@46e3de8333eb35561a51d197fc399394280641ef + http://www.w3.org/ns/prov#atLocation: + - '@value': data/covidtracking + http://www.w3.org/ns/prov#hadMember: + - '@id': https://renkulab.io/blob/46e3de8333eb35561a51d197fc399394280641ef/data/covidtracking/states-daily.json + - '@id': https://renkulab.io/blob/46e3de8333eb35561a51d197fc399394280641ef/data/covidtracking/states-metadata.json + http://www.w3.org/ns/prov#qualifiedGeneration: + - '@id': https://localhost/activities/commit/46e3de8333eb35561a51d197fc399394280641ef/steps/step_1/outputs/2 +- '@id': https://renkulab.io/blob/46e3de8333eb35561a51d197fc399394280641ef/data/covidtracking/states-daily.json + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': data/covidtracking/states-daily.json@46e3de8333eb35561a51d197fc399394280641ef + http://www.w3.org/ns/prov#atLocation: + - '@value': data/covidtracking/states-daily.json + http://www.w3.org/ns/prov#qualifiedGeneration: + - '@id': https://localhost/activities/commit/46e3de8333eb35561a51d197fc399394280641ef/steps/step_1/tree/data/covidtracking/states-daily.json +- '@id': https://renkulab.io/blob/46e3de8333eb35561a51d197fc399394280641ef/data/covidtracking/states-metadata.json + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': data/covidtracking/states-metadata.json@46e3de8333eb35561a51d197fc399394280641ef + http://www.w3.org/ns/prov#atLocation: + - '@value': data/covidtracking/states-metadata.json + http://www.w3.org/ns/prov#qualifiedGeneration: + - '@id': https://localhost/activities/commit/46e3de8333eb35561a51d197fc399394280641ef/steps/step_1/tree/data/covidtracking/states-metadata.json +- '@id': https://renkulab.io/blob/46e3de8333eb35561a51d197fc399394280641ef/runs/download-covidtracking-data.runs.ipynb + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': runs/download-covidtracking-data.runs.ipynb@46e3de8333eb35561a51d197fc399394280641ef + http://www.w3.org/ns/prov#atLocation: + - '@value': runs/download-covidtracking-data.runs.ipynb + http://www.w3.org/ns/prov#qualifiedGeneration: + - '@id': https://localhost/activities/commit/46e3de8333eb35561a51d197fc399394280641ef/steps/step_1/outputs/4 +- '@id': https://renkulab.io/blob/ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658/data/covidtracking + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Collection + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': data/covidtracking@ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658 + http://www.w3.org/ns/prov#atLocation: + - '@value': data/covidtracking + http://www.w3.org/ns/prov#hadMember: + - '@id': https://renkulab.io/blob/ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658/data/covidtracking/states-daily.json + - '@id': https://renkulab.io/blob/ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658/data/covidtracking/states-metadata.json +- '@id': https://renkulab.io/blob/ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658/data/covidtracking/states-daily.json + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': data/covidtracking/states-daily.json@ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658 + http://www.w3.org/ns/prov#atLocation: + - '@value': data/covidtracking/states-daily.json +- '@id': https://renkulab.io/blob/ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658/data/covidtracking/states-metadata.json + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': data/covidtracking/states-metadata.json@ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658 + http://www.w3.org/ns/prov#atLocation: + - '@value': data/covidtracking/states-metadata.json +- '@id': https://renkulab.io/blob/ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658/runs/download-covidtracking-data.runs.ipynb + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': runs/download-covidtracking-data.runs.ipynb@ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658 + http://www.w3.org/ns/prov#atLocation: + - '@value': runs/download-covidtracking-data.runs.ipynb +- '@id': https://renkulab.io/blob/d754df040a4bf8f7cb7ae6ed4151830f9bb0f520/notebooks/process/download-covidtracking-data.ipynb + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': notebooks/process/download-covidtracking-data.ipynb@d754df040a4bf8f7cb7ae6ed4151830f9bb0f520 + http://www.w3.org/ns/prov#atLocation: + - '@value': notebooks/process/download-covidtracking-data.ipynb +- '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + '@type': + - http://schema.org/Project + - http://www.w3.org/ns/prov#Location + http://schema.org/agent: + - '@value': pre-0.11.0 + http://schema.org/creator: + - '@id': mailto:cramakri@ethz.ch + http://schema.org/dateCreated: + - '@value': '2020-03-11T21:43:12.736000+00:00' + http://schema.org/name: + - '@value': covid-19-dashboard + http://schema.org/schemaVersion: + - '@value': '4' + https://swissdatasciencecenter.github.io/renku-ontology#automatedTemplateUpdate: + - '@value': false + https://swissdatasciencecenter.github.io/renku-ontology#immutableTemplateFiles: [] +- '@id': https://renkulab.io/runs/528771fde26f471b89d989e2cf8ad436e8ee337e + '@type': + - http://www.w3.org/ns/prov#Entity + - http://www.w3.org/ns/prov#Plan + - https://swissdatasciencecenter.github.io/renku-ontology#Run + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://schema.org/keywords: [] + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': .renku/workflow/fee2db68809c45de96163347d55b9425.cwl@46e3de8333eb35561a51d197fc399394280641ef + http://www.w3.org/ns/prov#atLocation: + - '@value': .renku/workflow/497cd4459fde4d798e9723d84afedb4e_migrated.yaml + https://swissdatasciencecenter.github.io/renku-ontology#hasArguments: [] + https://swissdatasciencecenter.github.io/renku-ontology#hasInputs: + - '@id': https://renkulab.io/runs/528771fde26f471b89d989e2cf8ad436e8ee337e/steps/step_1/inputs/3 + https://swissdatasciencecenter.github.io/renku-ontology#hasOutputs: + - '@id': https://renkulab.io/runs/528771fde26f471b89d989e2cf8ad436e8ee337e/steps/step_1/outputs/4 + - '@id': https://renkulab.io/runs/528771fde26f471b89d989e2cf8ad436e8ee337e/steps/step_1/outputs/2 + https://swissdatasciencecenter.github.io/renku-ontology#hasRunParameters: [] + https://swissdatasciencecenter.github.io/renku-ontology#hasSubprocess: + - '@id': https://renkulab.io/runs/528771fde26f471b89d989e2cf8ad436e8ee337e/subprocess/1 + https://swissdatasciencecenter.github.io/renku-ontology#successCodes: [] +- '@id': https://renkulab.io/runs/528771fde26f471b89d989e2cf8ad436e8ee337e/steps/step_1/inputs/3 + '@type': + - https://swissdatasciencecenter.github.io/renku-ontology#CommandInput + - https://swissdatasciencecenter.github.io/renku-ontology#CommandParameter + http://schema.org/defaultValue: + - '@value': notebooks/process/download-covidtracking-data.ipynb + http://schema.org/name: + - '@value': inject-paths-3 + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': Command Input "None" + https://swissdatasciencecenter.github.io/renku-ontology#consumes: + - '@id': https://renkulab.io/blob/d754df040a4bf8f7cb7ae6ed4151830f9bb0f520/notebooks/process/download-covidtracking-data.ipynb + https://swissdatasciencecenter.github.io/renku-ontology#position: + - '@value': 3 + https://swissdatasciencecenter.github.io/renku-ontology#prefix: + - 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input_directory: - streamable: false - type: Directory - outputs: - output_file: - outputBinding: - glob: $(inputs.filename) - streamable: false - type: File - permanentFailCodes: [] - requirements: - - &id001 - class: InlineJavascriptRequirement - - &id002 - class: InitialWorkDirRequirement - listing: $(inputs.input_directory.listing) - successCodes: [] - temporaryFailCodes: [] - step_2: - in: - input_1: input_2 - input_2: input_3 - input_3: input_4 - input_4: input_5 - out: - - output_0 - - output_1 - run: a17d560c41a54f5aa307ce5f3c5effe5_papermill.cwl - step_3: - in: - filename: input_6 - input_directory: step_2/output_1 - out: - - output_file - run: - arguments: [] - baseCommand: - - 'true' - class: CommandLineTool - cwlVersion: v1.0 - hints: [] - inputs: - filename: - default: states-metadata.json - streamable: false - type: string - input_directory: - streamable: false - type: Directory - outputs: - output_file: - outputBinding: - glob: $(inputs.filename) - streamable: false - type: File - permanentFailCodes: [] - requirements: - - *id001 - - *id002 - successCodes: [] - temporaryFailCodes: []