diff --git a/.renku/activity_index.yaml b/.renku/activity_index.yaml index b539d770c7129e5bb271868bc8fcdb1da4c06561..514d221ed4eba13c080f38ab67fa5b76e0605e95 100644 --- a/.renku/activity_index.yaml +++ b/.renku/activity_index.yaml @@ -281,6 +281,8 @@ data/covidtracking: - .renku/workflow/f93b76086a054e30968f84fd8f0deb46_migrated.yaml 5b9bee37fc812c7cdb440029ed28e9970539aaab: - .renku/workflow/1f1bf2e650d146c39f6585dc9d512f27_migrated.yaml + 5d46b5300156c2ec9aadb1660b69b19dcd20dcc8: + - .renku/workflow/f8e42ae492014a7f86d84b04429499e8_migrated.yaml 5ea01cd8b5abc4f1cbfa463af6741fea3047398a: - .renku/workflow/225fb25d3d76428fbc582fe4eaf2edad_migrated.yaml 5ee887179c9c93ae39021de274fe6d7937a21b41: @@ -777,6 +779,8 @@ data/covidtracking/states-daily.json: - .renku/workflow/f93b76086a054e30968f84fd8f0deb46_migrated.yaml 5b9bee37fc812c7cdb440029ed28e9970539aaab: - .renku/workflow/1f1bf2e650d146c39f6585dc9d512f27_migrated.yaml + 5d46b5300156c2ec9aadb1660b69b19dcd20dcc8: + - .renku/workflow/f8e42ae492014a7f86d84b04429499e8_migrated.yaml 5ea01cd8b5abc4f1cbfa463af6741fea3047398a: - .renku/workflow/225fb25d3d76428fbc582fe4eaf2edad_migrated.yaml 5ee887179c9c93ae39021de274fe6d7937a21b41: @@ -1264,6 +1268,8 @@ data/covidtracking/states-metadata.json: - .renku/workflow/f93b76086a054e30968f84fd8f0deb46_migrated.yaml 5b9bee37fc812c7cdb440029ed28e9970539aaab: - .renku/workflow/1f1bf2e650d146c39f6585dc9d512f27_migrated.yaml + 5d46b5300156c2ec9aadb1660b69b19dcd20dcc8: + - .renku/workflow/f8e42ae492014a7f86d84b04429499e8_migrated.yaml 5ea01cd8b5abc4f1cbfa463af6741fea3047398a: - .renku/workflow/225fb25d3d76428fbc582fe4eaf2edad_migrated.yaml 5ee887179c9c93ae39021de274fe6d7937a21b41: @@ -2752,6 +2758,8 @@ runs/download-covidtracking-data.runs.ipynb: - .renku/workflow/f93b76086a054e30968f84fd8f0deb46_migrated.yaml 5b9bee37fc812c7cdb440029ed28e9970539aaab: - .renku/workflow/1f1bf2e650d146c39f6585dc9d512f27_migrated.yaml + 5d46b5300156c2ec9aadb1660b69b19dcd20dcc8: + - .renku/workflow/f8e42ae492014a7f86d84b04429499e8_migrated.yaml 5ea01cd8b5abc4f1cbfa463af6741fea3047398a: - .renku/workflow/225fb25d3d76428fbc582fe4eaf2edad_migrated.yaml 5ee887179c9c93ae39021de274fe6d7937a21b41: diff --git a/.renku/workflow/d38156548319433aa76d8a44441236bd.cwl b/.renku/workflow/d38156548319433aa76d8a44441236bd.cwl deleted file mode 100644 index aac46e30210a4a78dbe1f49ae5b15cfbea9fbf00..0000000000000000000000000000000000000000 --- a/.renku/workflow/d38156548319433aa76d8a44441236bd.cwl +++ /dev/null @@ -1,120 +0,0 @@ -class: Workflow -cwlVersion: v1.0 -hints: [] -inputs: - input_1: - default: out_folder - streamable: false - type: string - input_2: - default: data/covidtracking - streamable: false - type: string - input_3: - default: - class: File - path: ../../notebooks/process/download-covidtracking-data.ipynb - streamable: false - type: File - input_4: - default: runs/download-covidtracking-data.runs.ipynb - streamable: false - type: string - input_5: - default: states-daily.json - streamable: false - type: string - input_6: - default: states-metadata.json - streamable: false - type: string -outputs: - output_0: - outputSource: step_1/output_1 - streamable: false - type: Directory - output_2: - outputSource: step_1/output_0 - streamable: false - type: File -requirements: [] -steps: - step_1: - in: - input_1: input_1 - input_2: input_2 - input_3: input_3 - input_4: input_4 - out: - - output_0 - - output_1 - run: a17d560c41a54f5aa307ce5f3c5effe5_papermill.cwl - step_2: - in: - filename: input_5 - input_directory: step_1/output_1 - out: - - output_file - run: - arguments: [] - baseCommand: - - 'true' - class: CommandLineTool - cwlVersion: v1.0 - hints: [] - inputs: - filename: - default: states-daily.json - streamable: false - type: string - input_directory: - streamable: false - type: Directory - outputs: - output_file: - outputBinding: - glob: $(inputs.filename) - streamable: false - type: File - permanentFailCodes: [] - requirements: - - &id001 - class: InlineJavascriptRequirement - - &id002 - class: InitialWorkDirRequirement - listing: $(inputs.input_directory.listing) - successCodes: [] - temporaryFailCodes: [] - step_3: - in: - filename: input_6 - input_directory: step_1/output_1 - out: - - output_file - run: - arguments: [] - baseCommand: - - 'true' - class: CommandLineTool - cwlVersion: v1.0 - hints: [] - inputs: - filename: - default: states-metadata.json - streamable: false - type: string - input_directory: - streamable: false - type: Directory - outputs: - output_file: - outputBinding: - glob: $(inputs.filename) - streamable: false - type: File - permanentFailCodes: [] - requirements: - - *id001 - - *id002 - successCodes: [] - temporaryFailCodes: [] diff --git a/.renku/workflow/f8e42ae492014a7f86d84b04429499e8_migrated.yaml b/.renku/workflow/f8e42ae492014a7f86d84b04429499e8_migrated.yaml new file mode 100644 index 0000000000000000000000000000000000000000..dd31700a5e4fbcf61d5373635625364a9a9a5529 --- /dev/null +++ b/.renku/workflow/f8e42ae492014a7f86d84b04429499e8_migrated.yaml @@ -0,0 +1,434 @@ +- '@id': https://github.com/swissdatasciencecenter/renku-python/tree/v0.10.4 + '@type': + - http://purl.org/wf4ever/wfprov#WorkflowEngine + - http://www.w3.org/ns/prov#SoftwareAgent + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': renku 0.10.4 +- '@id': https://github.com/swissdatasciencecenter/renku-python/tree/v0.15.1 + '@type': + - http://purl.org/wf4ever/wfprov#WorkflowEngine + - http://www.w3.org/ns/prov#SoftwareAgent + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': renku 0.15.1 +- '@id': https://localhost/activities/commit/5d46b5300156c2ec9aadb1660b69b19dcd20dcc8 + '@type': + - http://purl.org/wf4ever/wfprov#ProcessRun + - http://purl.org/wf4ever/wfprov#WorkflowRun + - http://www.w3.org/ns/prov#Activity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#comment: + - '@value': renku rerun data/covidtracking/states-metadata.json data/covidtracking/states-daily.json + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': .renku/workflow/f8e42ae492014a7f86d84b04429499e8_migrated.yaml@5d46b5300156c2ec9aadb1660b69b19dcd20dcc8 + http://www.w3.org/ns/prov#atLocation: + - '@value': .renku/workflow/f8e42ae492014a7f86d84b04429499e8_migrated.yaml + http://www.w3.org/ns/prov#endedAtTime: + - '@type': http://www.w3.org/2001/XMLSchema#dateTime + '@value': '2020-12-10T07:45:08+00:00' + http://www.w3.org/ns/prov#influenced: [] + http://www.w3.org/ns/prov#qualifiedAssociation: + - '@id': https://localhost/activities/commit/5d46b5300156c2ec9aadb1660b69b19dcd20dcc8/association + http://www.w3.org/ns/prov#qualifiedUsage: + - '@id': https://localhost/activities/commit/5d46b5300156c2ec9aadb1660b69b19dcd20dcc8/inputs/1 + http://www.w3.org/ns/prov#startedAtTime: + - '@type': http://www.w3.org/2001/XMLSchema#dateTime + '@value': '2020-12-10T07:45:08+00:00' + http://www.w3.org/ns/prov#wasAssociatedWith: + - '@id': mailto:beepbop@example.com + - '@id': https://github.com/swissdatasciencecenter/renku-python/tree/v0.15.1 + http://www.w3.org/ns/prov#wasInformedBy: + - '@id': https://localhost/activities/commit/8b8ae7857c723ce5a698881438570875bc5c7d7f +- '@id': https://localhost/activities/commit/5d46b5300156c2ec9aadb1660b69b19dcd20dcc8/association + '@type': + - http://www.w3.org/ns/prov#Association + http://www.w3.org/ns/prov#agent: + - '@id': https://github.com/swissdatasciencecenter/renku-python/tree/v0.10.4 + http://www.w3.org/ns/prov#hadPlan: + - '@id': https://renkulab.io/runs/617893242453651a8c3d13f2097352f66c99132a +- '@id': https://localhost/activities/commit/5d46b5300156c2ec9aadb1660b69b19dcd20dcc8/inputs/1 + '@type': + - http://www.w3.org/ns/prov#Usage + http://www.w3.org/ns/prov#entity: + - '@id': https://renkulab.io/blob/d754df040a4bf8f7cb7ae6ed4151830f9bb0f520/notebooks/process/download-covidtracking-data.ipynb + http://www.w3.org/ns/prov#hadRole: + - '@value': steps/step_1/inputs/3 +- '@id': https://localhost/activities/commit/5d46b5300156c2ec9aadb1660b69b19dcd20dcc8/steps/step_1 + '@type': + - http://purl.org/wf4ever/wfprov#ProcessRun + - http://www.w3.org/ns/prov#Activity + http://purl.org/wf4ever/wfprov#wasPartOfWorkflowRun: + - '@id': https://localhost/activities/commit/5d46b5300156c2ec9aadb1660b69b19dcd20dcc8 + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#comment: + - '@value': renku rerun data/covidtracking/states-metadata.json data/covidtracking/states-daily.json + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': .renku/workflow/f8e42ae492014a7f86d84b04429499e8_migrated.yaml@5d46b5300156c2ec9aadb1660b69b19dcd20dcc8 + http://www.w3.org/ns/prov#atLocation: + - '@value': .renku/workflow/f8e42ae492014a7f86d84b04429499e8_migrated.yaml + http://www.w3.org/ns/prov#endedAtTime: + - '@type': http://www.w3.org/2001/XMLSchema#dateTime + '@value': '2020-12-10T07:45:08+00:00' + http://www.w3.org/ns/prov#influenced: [] + http://www.w3.org/ns/prov#qualifiedAssociation: + - '@id': https://localhost/activities/commit/5d46b5300156c2ec9aadb1660b69b19dcd20dcc8/steps/step_1/association + http://www.w3.org/ns/prov#qualifiedUsage: + - '@id': https://localhost/activities/commit/5d46b5300156c2ec9aadb1660b69b19dcd20dcc8/steps/step_1/inputs/3 + http://www.w3.org/ns/prov#startedAtTime: + - '@type': http://www.w3.org/2001/XMLSchema#dateTime + '@value': '2020-12-10T07:45:08+00:00' + http://www.w3.org/ns/prov#wasAssociatedWith: + - '@id': mailto:beepbop@example.com + - '@id': https://github.com/swissdatasciencecenter/renku-python/tree/v0.15.1 + http://www.w3.org/ns/prov#wasInformedBy: + - '@id': https://localhost/activities/commit/8b8ae7857c723ce5a698881438570875bc5c7d7f + https://swissdatasciencecenter.github.io/renku-ontology#hasRunParameter: [] +- '@id': https://localhost/activities/commit/5d46b5300156c2ec9aadb1660b69b19dcd20dcc8/steps/step_1/association + '@type': + - http://www.w3.org/ns/prov#Association + http://www.w3.org/ns/prov#agent: + - '@id': https://github.com/swissdatasciencecenter/renku-python/tree/v0.10.4 + http://www.w3.org/ns/prov#hadPlan: + - '@id': https://renkulab.io/runs/739f0a2e0e8cc311730fa1b42221d78df77bc226 +- '@id': https://localhost/activities/commit/5d46b5300156c2ec9aadb1660b69b19dcd20dcc8/steps/step_1/inputs/3 + '@type': + - http://www.w3.org/ns/prov#Usage + http://www.w3.org/ns/prov#entity: + - '@id': https://renkulab.io/blob/d754df040a4bf8f7cb7ae6ed4151830f9bb0f520/notebooks/process/download-covidtracking-data.ipynb + http://www.w3.org/ns/prov#hadRole: + - '@value': inputs/3 +- '@id': https://localhost/activities/commit/5d46b5300156c2ec9aadb1660b69b19dcd20dcc8/steps/step_1/outputs/2 + '@type': + - http://www.w3.org/ns/prov#Generation + http://www.w3.org/ns/prov#activity: + - '@id': https://localhost/activities/commit/5d46b5300156c2ec9aadb1660b69b19dcd20dcc8/steps/step_1 + - '@id': https://localhost/activities/commit/5d46b5300156c2ec9aadb1660b69b19dcd20dcc8 + http://www.w3.org/ns/prov#hadRole: + - '@value': outputs/2 +- '@id': https://localhost/activities/commit/5d46b5300156c2ec9aadb1660b69b19dcd20dcc8/steps/step_1/outputs/4 + '@type': + - http://www.w3.org/ns/prov#Generation + http://www.w3.org/ns/prov#activity: + - '@id': https://localhost/activities/commit/5d46b5300156c2ec9aadb1660b69b19dcd20dcc8/steps/step_1 + - '@id': https://localhost/activities/commit/5d46b5300156c2ec9aadb1660b69b19dcd20dcc8 + http://www.w3.org/ns/prov#hadRole: + - '@value': outputs/4 +- '@id': https://localhost/activities/commit/5d46b5300156c2ec9aadb1660b69b19dcd20dcc8/steps/step_1/tree/data/covidtracking/states-daily.json + '@type': + - http://www.w3.org/ns/prov#Generation + http://www.w3.org/ns/prov#activity: + - '@id': https://localhost/activities/commit/5d46b5300156c2ec9aadb1660b69b19dcd20dcc8 +- '@id': https://localhost/activities/commit/5d46b5300156c2ec9aadb1660b69b19dcd20dcc8/steps/step_1/tree/data/covidtracking/states-metadata.json + '@type': + - http://www.w3.org/ns/prov#Generation + http://www.w3.org/ns/prov#activity: + - '@id': https://localhost/activities/commit/5d46b5300156c2ec9aadb1660b69b19dcd20dcc8 +- '@id': https://renkulab.io/blob/5d46b5300156c2ec9aadb1660b69b19dcd20dcc8/data/covidtracking + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Collection + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': data/covidtracking@5d46b5300156c2ec9aadb1660b69b19dcd20dcc8 + http://www.w3.org/ns/prov#atLocation: + - '@value': data/covidtracking + http://www.w3.org/ns/prov#hadMember: + - '@id': https://renkulab.io/blob/5d46b5300156c2ec9aadb1660b69b19dcd20dcc8/data/covidtracking/states-daily.json + - '@id': https://renkulab.io/blob/5d46b5300156c2ec9aadb1660b69b19dcd20dcc8/data/covidtracking/states-metadata.json + http://www.w3.org/ns/prov#qualifiedGeneration: + - '@id': https://localhost/activities/commit/5d46b5300156c2ec9aadb1660b69b19dcd20dcc8/steps/step_1/outputs/2 +- '@id': https://renkulab.io/blob/5d46b5300156c2ec9aadb1660b69b19dcd20dcc8/data/covidtracking/states-daily.json + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': data/covidtracking/states-daily.json@5d46b5300156c2ec9aadb1660b69b19dcd20dcc8 + http://www.w3.org/ns/prov#atLocation: + - '@value': data/covidtracking/states-daily.json + http://www.w3.org/ns/prov#qualifiedGeneration: + - '@id': https://localhost/activities/commit/5d46b5300156c2ec9aadb1660b69b19dcd20dcc8/steps/step_1/tree/data/covidtracking/states-daily.json +- '@id': https://renkulab.io/blob/5d46b5300156c2ec9aadb1660b69b19dcd20dcc8/data/covidtracking/states-metadata.json + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': data/covidtracking/states-metadata.json@5d46b5300156c2ec9aadb1660b69b19dcd20dcc8 + http://www.w3.org/ns/prov#atLocation: + - '@value': data/covidtracking/states-metadata.json + http://www.w3.org/ns/prov#qualifiedGeneration: + - '@id': https://localhost/activities/commit/5d46b5300156c2ec9aadb1660b69b19dcd20dcc8/steps/step_1/tree/data/covidtracking/states-metadata.json +- '@id': https://renkulab.io/blob/5d46b5300156c2ec9aadb1660b69b19dcd20dcc8/runs/download-covidtracking-data.runs.ipynb + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': runs/download-covidtracking-data.runs.ipynb@5d46b5300156c2ec9aadb1660b69b19dcd20dcc8 + http://www.w3.org/ns/prov#atLocation: + - '@value': runs/download-covidtracking-data.runs.ipynb + http://www.w3.org/ns/prov#qualifiedGeneration: + - '@id': https://localhost/activities/commit/5d46b5300156c2ec9aadb1660b69b19dcd20dcc8/steps/step_1/outputs/4 +- '@id': https://renkulab.io/blob/ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658/data/covidtracking + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Collection + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': data/covidtracking@ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658 + http://www.w3.org/ns/prov#atLocation: + - '@value': data/covidtracking + http://www.w3.org/ns/prov#hadMember: + - '@id': https://renkulab.io/blob/ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658/data/covidtracking/states-daily.json + - '@id': https://renkulab.io/blob/ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658/data/covidtracking/states-metadata.json +- '@id': https://renkulab.io/blob/ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658/data/covidtracking/states-daily.json + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - 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