diff --git a/.renku/workflow/9c0f49623aa94b0d85c3de74aae5f32a.cwl b/.renku/workflow/9c0f49623aa94b0d85c3de74aae5f32a.cwl
new file mode 100644
index 0000000000000000000000000000000000000000..15c2ba919a29726f040c2393ca4409fb2bad35a5
--- /dev/null
+++ b/.renku/workflow/9c0f49623aa94b0d85c3de74aae5f32a.cwl
@@ -0,0 +1,148 @@
+class: Workflow
+cwlVersion: v1.0
+hints: []
+inputs:
+ input_1:
+ default: states-daily.json
+ streamable: false
+ type: string
+ input_10:
+ default: states-metadata.json
+ streamable: false
+ type: string
+ input_2:
+ default: out_folder
+ streamable: false
+ type: string
+ input_3:
+ default: data/covidtracking
+ streamable: false
+ type: string
+ input_4:
+ default:
+ class: File
+ path: ../../notebooks/process/download-covidtracking-data.ipynb
+ streamable: false
+ type: File
+ input_5:
+ default: runs/download-covidtracking-data.runs.ipynb
+ streamable: false
+ type: string
+ input_6:
+ default: out_folder
+ streamable: false
+ type: string
+ input_7:
+ default: data/covidtracking
+ streamable: false
+ type: string
+ input_8:
+ default:
+ class: File
+ path: ../../notebooks/process/download-covidtracking-data.ipynb
+ streamable: false
+ type: File
+ input_9:
+ default: runs/download-covidtracking-data.runs.ipynb
+ streamable: false
+ type: string
+outputs:
+ output_1:
+ outputSource: step_2/output_1
+ streamable: false
+ type: Directory
+ output_2:
+ outputSource: step_2/output_0
+ streamable: false
+ type: File
+requirements: []
+steps:
+ step_1:
+ in:
+ filename: input_1
+ input_directory: step_2/output_1
+ out:
+ - output_file
+ run:
+ arguments: []
+ baseCommand:
+ - 'true'
+ class: CommandLineTool
+ cwlVersion: v1.0
+ hints: []
+ inputs:
+ filename:
+ default: states-daily.json
+ streamable: false
+ type: string
+ input_directory:
+ streamable: false
+ type: Directory
+ outputs:
+ output_file:
+ outputBinding:
+ glob: $(inputs.filename)
+ streamable: false
+ type: File
+ permanentFailCodes: []
+ requirements:
+ - &id001
+ class: InlineJavascriptRequirement
+ - &id002
+ class: InitialWorkDirRequirement
+ listing: $(inputs.input_directory.listing)
+ successCodes: []
+ temporaryFailCodes: []
+ step_2:
+ in:
+ input_1: input_2
+ input_2: input_3
+ input_3: input_4
+ input_4: input_5
+ out:
+ - output_1
+ - output_0
+ run: a17d560c41a54f5aa307ce5f3c5effe5_papermill.cwl
+ step_3:
+ in:
+ input_1: input_6
+ input_2: input_7
+ input_3: input_8
+ input_4: input_9
+ out:
+ - output_1
+ - output_0
+ run: a17d560c41a54f5aa307ce5f3c5effe5_papermill.cwl
+ step_4:
+ in:
+ filename: input_10
+ input_directory: step_3/output_1
+ out:
+ - output_file
+ run:
+ arguments: []
+ baseCommand:
+ - 'true'
+ class: CommandLineTool
+ cwlVersion: v1.0
+ hints: []
+ inputs:
+ filename:
+ default: states-metadata.json
+ streamable: false
+ type: string
+ input_directory:
+ streamable: false
+ type: Directory
+ outputs:
+ output_file:
+ outputBinding:
+ glob: $(inputs.filename)
+ streamable: false
+ type: File
+ permanentFailCodes: []
+ requirements:
+ - *id001
+ - *id002
+ successCodes: []
+ temporaryFailCodes: []
diff --git a/data/covidtracking/states-daily.json b/data/covidtracking/states-daily.json
index 6ab3ababae886822407a11fc6b1e8e5ff6d0f55d..2115c114cab590659a3b30f7c37c8dc891567397 100644
--- a/data/covidtracking/states-daily.json
+++ b/data/covidtracking/states-daily.json
@@ -1,3 +1,3 @@
version https://git-lfs.github.com/spec/v1
-oid sha256:7afd46c40a8cb9186f35c22fab12ad9a699a6b20848be8758202bf642f6290d4
-size 731537
+oid sha256:de95fd7f92bde71c7aff203436902114592de6eff7cbe563ec11d974573199c0
+size 731539
diff --git a/data/covidtracking/states-metadata.json b/data/covidtracking/states-metadata.json
index 5428d6b949d4dc05ddd8e2c5f71b6d8359a1a960..f294193a5dc43517afb7081ddadf4e1b0e23e239 100644
--- a/data/covidtracking/states-metadata.json
+++ b/data/covidtracking/states-metadata.json
@@ -1,3 +1,3 @@
version https://git-lfs.github.com/spec/v1
-oid sha256:02551eb87d66d8eddd8d967130018327a21038defb9808493fb08125fec683e1
-size 25560
+oid sha256:4981574f48b790334619e0df26388a174d70d3985fd126dde0eb9d2a1d3f0ff5
+size 25627
diff --git a/runs/download-covidtracking-data.runs.ipynb b/runs/download-covidtracking-data.runs.ipynb
index 1bdccb88f1fbfe585695515ca83ad318adb047f2..f7a968cd3112aa01e0e53d27624a9c871fde1c6c 100644
--- a/runs/download-covidtracking-data.runs.ipynb
+++ b/runs/download-covidtracking-data.runs.ipynb
@@ -5,10 +5,10 @@
"execution_count": 1,
"metadata": {
"papermill": {
- "duration": 0.483354,
- "end_time": "2020-04-04T07:25:10.355198",
+ "duration": 4.118811,
+ "end_time": "2020-04-04T21:04:50.001206",
"exception": false,
- "start_time": "2020-04-04T07:25:09.871844",
+ "start_time": "2020-04-04T21:04:45.882395",
"status": "completed"
},
"tags": []
@@ -25,10 +25,10 @@
"execution_count": 2,
"metadata": {
"papermill": {
- "duration": 0.015684,
- "end_time": "2020-04-04T07:25:10.380598",
+ "duration": 0.017727,
+ "end_time": "2020-04-04T21:04:50.032092",
"exception": false,
- "start_time": "2020-04-04T07:25:10.364914",
+ "start_time": "2020-04-04T21:04:50.014365",
"status": "completed"
},
"tags": [
@@ -46,10 +46,10 @@
"execution_count": 3,
"metadata": {
"papermill": {
- "duration": 0.015223,
- "end_time": "2020-04-04T07:25:10.402953",
+ "duration": 0.021211,
+ "end_time": "2020-04-04T21:04:50.062863",
"exception": false,
- "start_time": "2020-04-04T07:25:10.387730",
+ "start_time": "2020-04-04T21:04:50.041652",
"status": "completed"
},
"tags": [
@@ -59,7 +59,7 @@
"outputs": [],
"source": [
"# Parameters\n",
- "PAPERMILL_INPUT_PATH = \"/tmp/lou3ghqx/notebooks/process/download-covidtracking-data.ipynb\"\n",
+ "PAPERMILL_INPUT_PATH = \"/tmp/cqky7dsw/notebooks/process/download-covidtracking-data.ipynb\"\n",
"PAPERMILL_OUTPUT_PATH = \"runs/download-covidtracking-data.runs.ipynb\"\n",
"out_folder = \"data/covidtracking\"\n"
]
@@ -68,10 +68,10 @@
"cell_type": "markdown",
"metadata": {
"papermill": {
- "duration": 0.006883,
- "end_time": "2020-04-04T07:25:10.417247",
+ "duration": 0.008752,
+ "end_time": "2020-04-04T21:04:50.085061",
"exception": false,
- "start_time": "2020-04-04T07:25:10.410364",
+ "start_time": "2020-04-04T21:04:50.076309",
"status": "completed"
},
"tags": []
@@ -87,10 +87,10 @@
"execution_count": 4,
"metadata": {
"papermill": {
- "duration": 0.237124,
- "end_time": "2020-04-04T07:25:10.660579",
+ "duration": 1.082816,
+ "end_time": "2020-04-04T21:04:51.175359",
"exception": false,
- "start_time": "2020-04-04T07:25:10.423455",
+ "start_time": "2020-04-04T21:04:50.092543",
"status": "completed"
},
"tags": []
@@ -107,10 +107,10 @@
"execution_count": 5,
"metadata": {
"papermill": {
- "duration": 0.022094,
- "end_time": "2020-04-04T07:25:10.694146",
+ "duration": 0.021503,
+ "end_time": "2020-04-04T21:04:51.208251",
"exception": false,
- "start_time": "2020-04-04T07:25:10.672052",
+ "start_time": "2020-04-04T21:04:51.186748",
"status": "completed"
},
"tags": []
@@ -129,10 +129,10 @@
"execution_count": 6,
"metadata": {
"papermill": {
- "duration": 0.065719,
- "end_time": "2020-04-04T07:25:10.768853",
+ "duration": 0.069639,
+ "end_time": "2020-04-04T21:04:51.286125",
"exception": false,
- "start_time": "2020-04-04T07:25:10.703134",
+ "start_time": "2020-04-04T21:04:51.216486",
"status": "completed"
},
"tags": []
@@ -246,10 +246,10 @@
"cell_type": "markdown",
"metadata": {
"papermill": {
- "duration": 0.007831,
- "end_time": "2020-04-04T07:25:10.786260",
+ "duration": 0.008089,
+ "end_time": "2020-04-04T21:04:51.303421",
"exception": false,
- "start_time": "2020-04-04T07:25:10.778429",
+ "start_time": "2020-04-04T21:04:51.295332",
"status": "completed"
},
"tags": []
@@ -263,10 +263,10 @@
"execution_count": 7,
"metadata": {
"papermill": {
- "duration": 0.215185,
- "end_time": "2020-04-04T07:25:11.009344",
+ "duration": 0.235648,
+ "end_time": "2020-04-04T21:04:51.547279",
"exception": false,
- "start_time": "2020-04-04T07:25:10.794159",
+ "start_time": "2020-04-04T21:04:51.311631",
"status": "completed"
},
"tags": []
@@ -283,10 +283,10 @@
"execution_count": 8,
"metadata": {
"papermill": {
- "duration": 0.025212,
- "end_time": "2020-04-04T07:25:11.045222",
+ "duration": 0.023705,
+ "end_time": "2020-04-04T21:04:51.585035",
"exception": false,
- "start_time": "2020-04-04T07:25:11.020010",
+ "start_time": "2020-04-04T21:04:51.561330",
"status": "completed"
},
"tags": []
@@ -305,10 +305,10 @@
"execution_count": 9,
"metadata": {
"papermill": {
- "duration": 0.093239,
- "end_time": "2020-04-04T07:25:11.151043",
+ "duration": 0.093556,
+ "end_time": "2020-04-04T21:04:51.689668",
"exception": false,
- "start_time": "2020-04-04T07:25:11.057804",
+ "start_time": "2020-04-04T21:04:51.596112",
"status": "completed"
},
"tags": []
@@ -474,18 +474,18 @@
"version": "3.7.3"
},
"papermill": {
- "duration": 2.432226,
- "end_time": "2020-04-04T07:25:11.472698",
+ "duration": 7.617778,
+ "end_time": "2020-04-04T21:04:52.010906",
"environment_variables": {},
"exception": null,
- "input_path": "/tmp/lou3ghqx/notebooks/process/download-covidtracking-data.ipynb",
+ "input_path": "/tmp/cqky7dsw/notebooks/process/download-covidtracking-data.ipynb",
"output_path": "runs/download-covidtracking-data.runs.ipynb",
"parameters": {
- "PAPERMILL_INPUT_PATH": "/tmp/lou3ghqx/notebooks/process/download-covidtracking-data.ipynb",
+ "PAPERMILL_INPUT_PATH": "/tmp/cqky7dsw/notebooks/process/download-covidtracking-data.ipynb",
"PAPERMILL_OUTPUT_PATH": "runs/download-covidtracking-data.runs.ipynb",
"out_folder": "data/covidtracking"
},
- "start_time": "2020-04-04T07:25:09.040472",
+ "start_time": "2020-04-04T21:04:44.393128",
"version": "1.1.0"
}
},