diff --git a/.renku/activity_index.yaml b/.renku/activity_index.yaml index 79a84945155695059b592c2096d1542daf24a256..75dd2ed6db78f418f0e7596c806d200ba0e95bf9 100644 --- a/.renku/activity_index.yaml +++ b/.renku/activity_index.yaml @@ -201,6 +201,8 @@ data/covidtracking: - .renku/workflow/850ffc358ee14faba006f43075fb13e3_migrated.yaml 42af95f6ded2cbab43d3d6ad51e44351ea339954: - .renku/workflow/330e9479f5ad4831b08049184c6b88e0_migrated.yaml + 4431bcc36ef61c92908c388d421fed4d005949ef: + - .renku/workflow/ec0dbe237b8e4e22b5db13934eb1ff00_migrated.yaml 446717f724f4745e0a0be8e9c60ed18bd0638dfc: - .renku/workflow/fb128066fd364f74bbb3eeb4066d3c25_migrated.yaml 454d1b726c57c72c1f6f3e588f5b6b7a46bed2e6: @@ -645,6 +647,8 @@ data/covidtracking/states-daily.json: - .renku/workflow/850ffc358ee14faba006f43075fb13e3_migrated.yaml 42af95f6ded2cbab43d3d6ad51e44351ea339954: - .renku/workflow/330e9479f5ad4831b08049184c6b88e0_migrated.yaml + 4431bcc36ef61c92908c388d421fed4d005949ef: + - .renku/workflow/ec0dbe237b8e4e22b5db13934eb1ff00_migrated.yaml 446717f724f4745e0a0be8e9c60ed18bd0638dfc: - .renku/workflow/fb128066fd364f74bbb3eeb4066d3c25_migrated.yaml 454d1b726c57c72c1f6f3e588f5b6b7a46bed2e6: @@ -1084,6 +1088,8 @@ data/covidtracking/states-metadata.json: - .renku/workflow/850ffc358ee14faba006f43075fb13e3_migrated.yaml 42af95f6ded2cbab43d3d6ad51e44351ea339954: - .renku/workflow/330e9479f5ad4831b08049184c6b88e0_migrated.yaml + 4431bcc36ef61c92908c388d421fed4d005949ef: + - .renku/workflow/ec0dbe237b8e4e22b5db13934eb1ff00_migrated.yaml 446717f724f4745e0a0be8e9c60ed18bd0638dfc: - .renku/workflow/fb128066fd364f74bbb3eeb4066d3c25_migrated.yaml 454d1b726c57c72c1f6f3e588f5b6b7a46bed2e6: @@ -2480,6 +2486,8 @@ runs/download-covidtracking-data.runs.ipynb: - .renku/workflow/850ffc358ee14faba006f43075fb13e3_migrated.yaml 42af95f6ded2cbab43d3d6ad51e44351ea339954: - .renku/workflow/330e9479f5ad4831b08049184c6b88e0_migrated.yaml + 4431bcc36ef61c92908c388d421fed4d005949ef: + - .renku/workflow/ec0dbe237b8e4e22b5db13934eb1ff00_migrated.yaml 446717f724f4745e0a0be8e9c60ed18bd0638dfc: - .renku/workflow/fb128066fd364f74bbb3eeb4066d3c25_migrated.yaml 454d1b726c57c72c1f6f3e588f5b6b7a46bed2e6: diff --git a/.renku/workflow/996b6b86b965481f96d76a6f19518a32.cwl b/.renku/workflow/996b6b86b965481f96d76a6f19518a32.cwl deleted file mode 100644 index a70cab1b0894b45fdb6210726544b051faead6ca..0000000000000000000000000000000000000000 --- a/.renku/workflow/996b6b86b965481f96d76a6f19518a32.cwl +++ /dev/null @@ -1,120 +0,0 @@ -class: Workflow -cwlVersion: v1.0 -hints: [] -inputs: - input_1: - default: out_folder - streamable: false - type: string - input_2: - default: data/covidtracking - streamable: false - type: string - input_3: - default: - class: File - path: ../../notebooks/process/download-covidtracking-data.ipynb - streamable: false - type: File - input_4: - default: runs/download-covidtracking-data.runs.ipynb - streamable: false - type: string - input_5: - default: states-metadata.json - streamable: false - type: string - input_6: - default: states-daily.json - streamable: false - type: string -outputs: - output_1: - outputSource: step_1/output_1 - streamable: false - type: Directory - output_2: - outputSource: step_1/output_0 - streamable: false - type: File -requirements: [] -steps: - step_1: - in: - input_1: input_1 - input_2: input_2 - input_3: input_3 - input_4: input_4 - out: - - output_1 - - output_0 - run: a17d560c41a54f5aa307ce5f3c5effe5_papermill.cwl - step_2: - in: - filename: input_5 - input_directory: step_1/output_1 - out: - - output_file - run: - arguments: [] - baseCommand: - - 'true' - class: CommandLineTool - cwlVersion: v1.0 - hints: [] - inputs: - filename: - default: states-metadata.json - streamable: false - type: string - input_directory: - streamable: false - type: Directory - outputs: - output_file: - outputBinding: - glob: $(inputs.filename) - streamable: false - type: File - permanentFailCodes: [] - requirements: - - &id001 - class: InlineJavascriptRequirement - - &id002 - class: InitialWorkDirRequirement - listing: $(inputs.input_directory.listing) - successCodes: [] - temporaryFailCodes: [] - step_3: - in: - filename: input_6 - input_directory: step_1/output_1 - out: - - output_file - run: - arguments: [] - baseCommand: - - 'true' - class: CommandLineTool - cwlVersion: v1.0 - hints: [] - inputs: - filename: - default: states-daily.json - streamable: false - type: string - input_directory: - streamable: false - type: Directory - outputs: - output_file: - outputBinding: - glob: $(inputs.filename) - streamable: false - type: File - permanentFailCodes: [] - requirements: - - *id001 - - *id002 - successCodes: [] - temporaryFailCodes: [] diff --git a/.renku/workflow/ec0dbe237b8e4e22b5db13934eb1ff00_migrated.yaml b/.renku/workflow/ec0dbe237b8e4e22b5db13934eb1ff00_migrated.yaml new file mode 100644 index 0000000000000000000000000000000000000000..41c0ae29ce10d6fcaf01bc44f22dde8a6fa1fe9d --- /dev/null +++ b/.renku/workflow/ec0dbe237b8e4e22b5db13934eb1ff00_migrated.yaml @@ -0,0 +1,434 @@ +- '@id': https://github.com/swissdatasciencecenter/renku-python/tree/v0.10.4 + '@type': + - http://purl.org/wf4ever/wfprov#WorkflowEngine + - http://www.w3.org/ns/prov#SoftwareAgent + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': renku 0.10.4 +- '@id': https://github.com/swissdatasciencecenter/renku-python/tree/v0.15.1 + '@type': + - http://purl.org/wf4ever/wfprov#WorkflowEngine + - http://www.w3.org/ns/prov#SoftwareAgent + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': renku 0.15.1 +- '@id': https://localhost/activities/commit/4431bcc36ef61c92908c388d421fed4d005949ef + '@type': + - http://purl.org/wf4ever/wfprov#ProcessRun + - http://purl.org/wf4ever/wfprov#WorkflowRun + - http://www.w3.org/ns/prov#Activity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#comment: + - '@value': renku rerun data/covidtracking/states-metadata.json data/covidtracking/states-daily.json + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': .renku/workflow/ec0dbe237b8e4e22b5db13934eb1ff00_migrated.yaml@4431bcc36ef61c92908c388d421fed4d005949ef + http://www.w3.org/ns/prov#atLocation: + - '@value': .renku/workflow/ec0dbe237b8e4e22b5db13934eb1ff00_migrated.yaml + http://www.w3.org/ns/prov#endedAtTime: + - '@type': http://www.w3.org/2001/XMLSchema#dateTime + '@value': '2020-11-12T07:37:47+00:00' + http://www.w3.org/ns/prov#influenced: [] + http://www.w3.org/ns/prov#qualifiedAssociation: + - '@id': https://localhost/activities/commit/4431bcc36ef61c92908c388d421fed4d005949ef/association + http://www.w3.org/ns/prov#qualifiedUsage: + - '@id': https://localhost/activities/commit/4431bcc36ef61c92908c388d421fed4d005949ef/inputs/1 + http://www.w3.org/ns/prov#startedAtTime: + - '@type': http://www.w3.org/2001/XMLSchema#dateTime + '@value': '2020-11-12T07:37:47+00:00' + http://www.w3.org/ns/prov#wasAssociatedWith: + - '@id': mailto:beepbop@example.com + - '@id': https://github.com/swissdatasciencecenter/renku-python/tree/v0.15.1 + http://www.w3.org/ns/prov#wasInformedBy: + - '@id': https://localhost/activities/commit/cd715f4fd364b0a7e9e780996e53cf271a1ed14f +- '@id': https://localhost/activities/commit/4431bcc36ef61c92908c388d421fed4d005949ef/association + '@type': + - http://www.w3.org/ns/prov#Association + http://www.w3.org/ns/prov#agent: + - '@id': https://github.com/swissdatasciencecenter/renku-python/tree/v0.10.4 + http://www.w3.org/ns/prov#hadPlan: + - '@id': https://renkulab.io/runs/f2e2394dbc6fd9f59cb416eb0c7b0e957e5cfa15 +- '@id': https://localhost/activities/commit/4431bcc36ef61c92908c388d421fed4d005949ef/inputs/1 + '@type': + - http://www.w3.org/ns/prov#Usage + http://www.w3.org/ns/prov#entity: + - '@id': https://renkulab.io/blob/d754df040a4bf8f7cb7ae6ed4151830f9bb0f520/notebooks/process/download-covidtracking-data.ipynb + http://www.w3.org/ns/prov#hadRole: + - '@value': steps/step_1/inputs/3 +- '@id': https://localhost/activities/commit/4431bcc36ef61c92908c388d421fed4d005949ef/steps/step_1 + '@type': + - http://purl.org/wf4ever/wfprov#ProcessRun + - http://www.w3.org/ns/prov#Activity + http://purl.org/wf4ever/wfprov#wasPartOfWorkflowRun: + - '@id': https://localhost/activities/commit/4431bcc36ef61c92908c388d421fed4d005949ef + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#comment: + - '@value': renku rerun data/covidtracking/states-metadata.json data/covidtracking/states-daily.json + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': .renku/workflow/ec0dbe237b8e4e22b5db13934eb1ff00_migrated.yaml@4431bcc36ef61c92908c388d421fed4d005949ef + http://www.w3.org/ns/prov#atLocation: + - '@value': .renku/workflow/ec0dbe237b8e4e22b5db13934eb1ff00_migrated.yaml + http://www.w3.org/ns/prov#endedAtTime: + - '@type': http://www.w3.org/2001/XMLSchema#dateTime + '@value': '2020-11-12T07:37:47+00:00' + http://www.w3.org/ns/prov#influenced: [] + http://www.w3.org/ns/prov#qualifiedAssociation: + - '@id': https://localhost/activities/commit/4431bcc36ef61c92908c388d421fed4d005949ef/steps/step_1/association + http://www.w3.org/ns/prov#qualifiedUsage: + - '@id': https://localhost/activities/commit/4431bcc36ef61c92908c388d421fed4d005949ef/steps/step_1/inputs/3 + http://www.w3.org/ns/prov#startedAtTime: + - '@type': http://www.w3.org/2001/XMLSchema#dateTime + '@value': '2020-11-12T07:37:47+00:00' + http://www.w3.org/ns/prov#wasAssociatedWith: + - '@id': mailto:beepbop@example.com + - '@id': https://github.com/swissdatasciencecenter/renku-python/tree/v0.15.1 + http://www.w3.org/ns/prov#wasInformedBy: + - '@id': https://localhost/activities/commit/cd715f4fd364b0a7e9e780996e53cf271a1ed14f + https://swissdatasciencecenter.github.io/renku-ontology#hasRunParameter: [] +- '@id': https://localhost/activities/commit/4431bcc36ef61c92908c388d421fed4d005949ef/steps/step_1/association + '@type': + - http://www.w3.org/ns/prov#Association + http://www.w3.org/ns/prov#agent: + - '@id': https://github.com/swissdatasciencecenter/renku-python/tree/v0.10.4 + http://www.w3.org/ns/prov#hadPlan: + - '@id': https://renkulab.io/runs/0a847e88bc8a3c9d22ce1221978fc30f3a909cb7 +- '@id': https://localhost/activities/commit/4431bcc36ef61c92908c388d421fed4d005949ef/steps/step_1/inputs/3 + '@type': + - http://www.w3.org/ns/prov#Usage + http://www.w3.org/ns/prov#entity: + - '@id': https://renkulab.io/blob/d754df040a4bf8f7cb7ae6ed4151830f9bb0f520/notebooks/process/download-covidtracking-data.ipynb + http://www.w3.org/ns/prov#hadRole: + - '@value': inputs/3 +- '@id': https://localhost/activities/commit/4431bcc36ef61c92908c388d421fed4d005949ef/steps/step_1/outputs/2 + '@type': + - http://www.w3.org/ns/prov#Generation + http://www.w3.org/ns/prov#activity: + - '@id': https://localhost/activities/commit/4431bcc36ef61c92908c388d421fed4d005949ef/steps/step_1 + - '@id': https://localhost/activities/commit/4431bcc36ef61c92908c388d421fed4d005949ef + http://www.w3.org/ns/prov#hadRole: + - '@value': outputs/2 +- '@id': https://localhost/activities/commit/4431bcc36ef61c92908c388d421fed4d005949ef/steps/step_1/outputs/4 + '@type': + - http://www.w3.org/ns/prov#Generation + http://www.w3.org/ns/prov#activity: + - '@id': https://localhost/activities/commit/4431bcc36ef61c92908c388d421fed4d005949ef/steps/step_1 + - '@id': https://localhost/activities/commit/4431bcc36ef61c92908c388d421fed4d005949ef + http://www.w3.org/ns/prov#hadRole: + - '@value': outputs/4 +- '@id': https://localhost/activities/commit/4431bcc36ef61c92908c388d421fed4d005949ef/steps/step_1/tree/data/covidtracking/states-daily.json + '@type': + - http://www.w3.org/ns/prov#Generation + http://www.w3.org/ns/prov#activity: + - '@id': https://localhost/activities/commit/4431bcc36ef61c92908c388d421fed4d005949ef +- '@id': https://localhost/activities/commit/4431bcc36ef61c92908c388d421fed4d005949ef/steps/step_1/tree/data/covidtracking/states-metadata.json + '@type': + - http://www.w3.org/ns/prov#Generation + http://www.w3.org/ns/prov#activity: + - '@id': https://localhost/activities/commit/4431bcc36ef61c92908c388d421fed4d005949ef +- '@id': https://renkulab.io/blob/4431bcc36ef61c92908c388d421fed4d005949ef/data/covidtracking + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Collection + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': data/covidtracking@4431bcc36ef61c92908c388d421fed4d005949ef + http://www.w3.org/ns/prov#atLocation: + - '@value': data/covidtracking + http://www.w3.org/ns/prov#hadMember: + - '@id': https://renkulab.io/blob/4431bcc36ef61c92908c388d421fed4d005949ef/data/covidtracking/states-daily.json + - '@id': https://renkulab.io/blob/4431bcc36ef61c92908c388d421fed4d005949ef/data/covidtracking/states-metadata.json + http://www.w3.org/ns/prov#qualifiedGeneration: + - '@id': https://localhost/activities/commit/4431bcc36ef61c92908c388d421fed4d005949ef/steps/step_1/outputs/2 +- '@id': https://renkulab.io/blob/4431bcc36ef61c92908c388d421fed4d005949ef/data/covidtracking/states-daily.json + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': data/covidtracking/states-daily.json@4431bcc36ef61c92908c388d421fed4d005949ef + http://www.w3.org/ns/prov#atLocation: + - '@value': data/covidtracking/states-daily.json + http://www.w3.org/ns/prov#qualifiedGeneration: + - '@id': https://localhost/activities/commit/4431bcc36ef61c92908c388d421fed4d005949ef/steps/step_1/tree/data/covidtracking/states-daily.json +- '@id': https://renkulab.io/blob/4431bcc36ef61c92908c388d421fed4d005949ef/data/covidtracking/states-metadata.json + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': data/covidtracking/states-metadata.json@4431bcc36ef61c92908c388d421fed4d005949ef + http://www.w3.org/ns/prov#atLocation: + - '@value': data/covidtracking/states-metadata.json + http://www.w3.org/ns/prov#qualifiedGeneration: + - '@id': https://localhost/activities/commit/4431bcc36ef61c92908c388d421fed4d005949ef/steps/step_1/tree/data/covidtracking/states-metadata.json +- '@id': https://renkulab.io/blob/4431bcc36ef61c92908c388d421fed4d005949ef/runs/download-covidtracking-data.runs.ipynb + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': runs/download-covidtracking-data.runs.ipynb@4431bcc36ef61c92908c388d421fed4d005949ef + http://www.w3.org/ns/prov#atLocation: + - '@value': runs/download-covidtracking-data.runs.ipynb + http://www.w3.org/ns/prov#qualifiedGeneration: + - '@id': https://localhost/activities/commit/4431bcc36ef61c92908c388d421fed4d005949ef/steps/step_1/outputs/4 +- '@id': https://renkulab.io/blob/ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658/data/covidtracking + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Collection + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': data/covidtracking@ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658 + http://www.w3.org/ns/prov#atLocation: + - '@value': data/covidtracking + http://www.w3.org/ns/prov#hadMember: + - '@id': https://renkulab.io/blob/ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658/data/covidtracking/states-daily.json + - '@id': https://renkulab.io/blob/ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658/data/covidtracking/states-metadata.json +- '@id': https://renkulab.io/blob/ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658/data/covidtracking/states-daily.json + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - 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