From a22bfdfe25c29994d5898800a5e4b72b56d0e1a6 Mon Sep 17 00:00:00 2001 From: Rok Roskar <rok.roskar@sdsc.ethz.ch> Date: Thu, 27 May 2021 18:24:26 +0200 Subject: [PATCH] renku migrate: committing migrated workflow --- .renku/activity_index.yaml | 8 + ...f6fd499646a6a3be5d57c5c761cc_migrated.yaml | 434 ++++++++++++++++++ .../a5f98d3aeed14de48b85f313a9f17aee.cwl | 120 ----- 3 files changed, 442 insertions(+), 120 deletions(-) create mode 100644 .renku/workflow/9e6bf6fd499646a6a3be5d57c5c761cc_migrated.yaml delete mode 100644 .renku/workflow/a5f98d3aeed14de48b85f313a9f17aee.cwl diff --git a/.renku/activity_index.yaml b/.renku/activity_index.yaml index 5fdb4e032..a38a2f451 100644 --- a/.renku/activity_index.yaml +++ b/.renku/activity_index.yaml @@ -450,6 +450,8 @@ data/covidtracking: - .renku/workflow/408af3223f4f4680b241c40a483a3830_migrated.yaml f283167b1acdbb86c8648276897256b693d820e3: - .renku/workflow/ddd11135c61d4e92ac03c5ec86f0a58a_migrated.yaml + f69f8d0fde70a57509a3cb311233ce7c3db22333: + - .renku/workflow/9e6bf6fd499646a6a3be5d57c5c761cc_migrated.yaml f77dda34cbb47fc593e4b1722dc8f0b9d16887bb: - .renku/workflow/6aa5203ca25e4bd89372af6df649c154_migrated.yaml f977f9442e18eae03c692e5f72656df2887f8956: @@ -815,6 +817,8 @@ data/covidtracking/states-daily.json: - .renku/workflow/408af3223f4f4680b241c40a483a3830_migrated.yaml f283167b1acdbb86c8648276897256b693d820e3: - .renku/workflow/ddd11135c61d4e92ac03c5ec86f0a58a_migrated.yaml + f69f8d0fde70a57509a3cb311233ce7c3db22333: + - .renku/workflow/9e6bf6fd499646a6a3be5d57c5c761cc_migrated.yaml f77dda34cbb47fc593e4b1722dc8f0b9d16887bb: - .renku/workflow/6aa5203ca25e4bd89372af6df649c154_migrated.yaml f977f9442e18eae03c692e5f72656df2887f8956: @@ -1176,6 +1180,8 @@ data/covidtracking/states-metadata.json: - .renku/workflow/408af3223f4f4680b241c40a483a3830_migrated.yaml f283167b1acdbb86c8648276897256b693d820e3: - .renku/workflow/ddd11135c61d4e92ac03c5ec86f0a58a_migrated.yaml + f69f8d0fde70a57509a3cb311233ce7c3db22333: + - .renku/workflow/9e6bf6fd499646a6a3be5d57c5c761cc_migrated.yaml f77dda34cbb47fc593e4b1722dc8f0b9d16887bb: - .renku/workflow/6aa5203ca25e4bd89372af6df649c154_migrated.yaml f977f9442e18eae03c692e5f72656df2887f8956: @@ -2496,6 +2502,8 @@ runs/download-covidtracking-data.runs.ipynb: - .renku/workflow/408af3223f4f4680b241c40a483a3830_migrated.yaml f283167b1acdbb86c8648276897256b693d820e3: - .renku/workflow/ddd11135c61d4e92ac03c5ec86f0a58a_migrated.yaml + f69f8d0fde70a57509a3cb311233ce7c3db22333: + - .renku/workflow/9e6bf6fd499646a6a3be5d57c5c761cc_migrated.yaml f77dda34cbb47fc593e4b1722dc8f0b9d16887bb: - .renku/workflow/6aa5203ca25e4bd89372af6df649c154_migrated.yaml f977f9442e18eae03c692e5f72656df2887f8956: diff --git a/.renku/workflow/9e6bf6fd499646a6a3be5d57c5c761cc_migrated.yaml b/.renku/workflow/9e6bf6fd499646a6a3be5d57c5c761cc_migrated.yaml new file mode 100644 index 000000000..e88bf8e0f --- /dev/null +++ b/.renku/workflow/9e6bf6fd499646a6a3be5d57c5c761cc_migrated.yaml @@ -0,0 +1,434 @@ +- '@id': https://github.com/swissdatasciencecenter/renku-python/tree/v0.10.4 + '@type': + - http://purl.org/wf4ever/wfprov#WorkflowEngine + - http://www.w3.org/ns/prov#SoftwareAgent + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': renku 0.10.4 +- '@id': https://github.com/swissdatasciencecenter/renku-python/tree/v0.15.1 + '@type': + - http://purl.org/wf4ever/wfprov#WorkflowEngine + - http://www.w3.org/ns/prov#SoftwareAgent + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': renku 0.15.1 +- '@id': https://localhost/activities/commit/f69f8d0fde70a57509a3cb311233ce7c3db22333 + '@type': + - http://purl.org/wf4ever/wfprov#ProcessRun + - http://purl.org/wf4ever/wfprov#WorkflowRun + - http://www.w3.org/ns/prov#Activity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#comment: + - '@value': renku rerun data/covidtracking/states-metadata.json data/covidtracking/states-daily.json + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': .renku/workflow/9e6bf6fd499646a6a3be5d57c5c761cc_migrated.yaml@f69f8d0fde70a57509a3cb311233ce7c3db22333 + http://www.w3.org/ns/prov#atLocation: + - '@value': .renku/workflow/9e6bf6fd499646a6a3be5d57c5c761cc_migrated.yaml + http://www.w3.org/ns/prov#endedAtTime: + - '@type': http://www.w3.org/2001/XMLSchema#dateTime + '@value': '2020-10-05T07:37:22+00:00' + http://www.w3.org/ns/prov#influenced: [] + http://www.w3.org/ns/prov#qualifiedAssociation: + - '@id': https://localhost/activities/commit/f69f8d0fde70a57509a3cb311233ce7c3db22333/association + http://www.w3.org/ns/prov#qualifiedUsage: + - '@id': https://localhost/activities/commit/f69f8d0fde70a57509a3cb311233ce7c3db22333/inputs/1 + http://www.w3.org/ns/prov#startedAtTime: + - '@type': http://www.w3.org/2001/XMLSchema#dateTime + '@value': '2020-10-05T07:37:22+00:00' + http://www.w3.org/ns/prov#wasAssociatedWith: + - '@id': mailto:beepbop@example.com + - '@id': https://github.com/swissdatasciencecenter/renku-python/tree/v0.15.1 + http://www.w3.org/ns/prov#wasInformedBy: + - '@id': https://localhost/activities/commit/647b0a5a3a14f670d1e5182e85c1eb6297011e4b +- '@id': https://localhost/activities/commit/f69f8d0fde70a57509a3cb311233ce7c3db22333/association + '@type': + - http://www.w3.org/ns/prov#Association + http://www.w3.org/ns/prov#agent: + - '@id': https://github.com/swissdatasciencecenter/renku-python/tree/v0.10.4 + http://www.w3.org/ns/prov#hadPlan: + - '@id': https://renkulab.io/runs/6c3ee48fd3a1b42c81d8caff5603cd026576ac55 +- '@id': https://localhost/activities/commit/f69f8d0fde70a57509a3cb311233ce7c3db22333/inputs/1 + '@type': + - http://www.w3.org/ns/prov#Usage + http://www.w3.org/ns/prov#entity: + - '@id': https://renkulab.io/blob/d754df040a4bf8f7cb7ae6ed4151830f9bb0f520/notebooks/process/download-covidtracking-data.ipynb + http://www.w3.org/ns/prov#hadRole: + - '@value': steps/step_1/inputs/3 +- '@id': https://localhost/activities/commit/f69f8d0fde70a57509a3cb311233ce7c3db22333/steps/step_1 + '@type': + - http://purl.org/wf4ever/wfprov#ProcessRun + - http://www.w3.org/ns/prov#Activity + http://purl.org/wf4ever/wfprov#wasPartOfWorkflowRun: + - '@id': https://localhost/activities/commit/f69f8d0fde70a57509a3cb311233ce7c3db22333 + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#comment: + - '@value': renku rerun data/covidtracking/states-metadata.json data/covidtracking/states-daily.json + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': .renku/workflow/9e6bf6fd499646a6a3be5d57c5c761cc_migrated.yaml@f69f8d0fde70a57509a3cb311233ce7c3db22333 + http://www.w3.org/ns/prov#atLocation: + - '@value': .renku/workflow/9e6bf6fd499646a6a3be5d57c5c761cc_migrated.yaml + http://www.w3.org/ns/prov#endedAtTime: + - '@type': http://www.w3.org/2001/XMLSchema#dateTime + '@value': '2020-10-05T07:37:22+00:00' + http://www.w3.org/ns/prov#influenced: [] + http://www.w3.org/ns/prov#qualifiedAssociation: + - '@id': https://localhost/activities/commit/f69f8d0fde70a57509a3cb311233ce7c3db22333/steps/step_1/association + http://www.w3.org/ns/prov#qualifiedUsage: + - '@id': https://localhost/activities/commit/f69f8d0fde70a57509a3cb311233ce7c3db22333/steps/step_1/inputs/3 + http://www.w3.org/ns/prov#startedAtTime: + - '@type': http://www.w3.org/2001/XMLSchema#dateTime + '@value': '2020-10-05T07:37:22+00:00' + http://www.w3.org/ns/prov#wasAssociatedWith: + - '@id': mailto:beepbop@example.com + - '@id': https://github.com/swissdatasciencecenter/renku-python/tree/v0.15.1 + http://www.w3.org/ns/prov#wasInformedBy: + - '@id': https://localhost/activities/commit/647b0a5a3a14f670d1e5182e85c1eb6297011e4b + https://swissdatasciencecenter.github.io/renku-ontology#hasRunParameter: [] +- '@id': https://localhost/activities/commit/f69f8d0fde70a57509a3cb311233ce7c3db22333/steps/step_1/association + '@type': + - http://www.w3.org/ns/prov#Association + http://www.w3.org/ns/prov#agent: + - '@id': https://github.com/swissdatasciencecenter/renku-python/tree/v0.10.4 + http://www.w3.org/ns/prov#hadPlan: + - '@id': https://renkulab.io/runs/519ff9b19ca7abc0026ee5a38f72db6eae55e42f +- '@id': https://localhost/activities/commit/f69f8d0fde70a57509a3cb311233ce7c3db22333/steps/step_1/inputs/3 + '@type': + - http://www.w3.org/ns/prov#Usage + http://www.w3.org/ns/prov#entity: + - '@id': https://renkulab.io/blob/d754df040a4bf8f7cb7ae6ed4151830f9bb0f520/notebooks/process/download-covidtracking-data.ipynb + http://www.w3.org/ns/prov#hadRole: + - '@value': inputs/3 +- '@id': https://localhost/activities/commit/f69f8d0fde70a57509a3cb311233ce7c3db22333/steps/step_1/outputs/2 + '@type': + - http://www.w3.org/ns/prov#Generation + http://www.w3.org/ns/prov#activity: + - '@id': https://localhost/activities/commit/f69f8d0fde70a57509a3cb311233ce7c3db22333/steps/step_1 + - '@id': https://localhost/activities/commit/f69f8d0fde70a57509a3cb311233ce7c3db22333 + http://www.w3.org/ns/prov#hadRole: + - '@value': outputs/2 +- '@id': https://localhost/activities/commit/f69f8d0fde70a57509a3cb311233ce7c3db22333/steps/step_1/outputs/4 + '@type': + - http://www.w3.org/ns/prov#Generation + http://www.w3.org/ns/prov#activity: + - '@id': https://localhost/activities/commit/f69f8d0fde70a57509a3cb311233ce7c3db22333/steps/step_1 + - '@id': https://localhost/activities/commit/f69f8d0fde70a57509a3cb311233ce7c3db22333 + http://www.w3.org/ns/prov#hadRole: + - '@value': outputs/4 +- '@id': https://localhost/activities/commit/f69f8d0fde70a57509a3cb311233ce7c3db22333/steps/step_1/tree/data/covidtracking/states-daily.json + '@type': + - http://www.w3.org/ns/prov#Generation + http://www.w3.org/ns/prov#activity: + - '@id': https://localhost/activities/commit/f69f8d0fde70a57509a3cb311233ce7c3db22333 +- '@id': https://localhost/activities/commit/f69f8d0fde70a57509a3cb311233ce7c3db22333/steps/step_1/tree/data/covidtracking/states-metadata.json + '@type': + - http://www.w3.org/ns/prov#Generation + http://www.w3.org/ns/prov#activity: + - '@id': https://localhost/activities/commit/f69f8d0fde70a57509a3cb311233ce7c3db22333 +- '@id': https://renkulab.io/blob/ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658/data/covidtracking + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Collection + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': data/covidtracking@ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658 + http://www.w3.org/ns/prov#atLocation: + - '@value': data/covidtracking + http://www.w3.org/ns/prov#hadMember: + - '@id': https://renkulab.io/blob/ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658/data/covidtracking/states-daily.json + - '@id': https://renkulab.io/blob/ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658/data/covidtracking/states-metadata.json +- '@id': https://renkulab.io/blob/ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658/data/covidtracking/states-daily.json + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': data/covidtracking/states-daily.json@ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658 + http://www.w3.org/ns/prov#atLocation: + - '@value': data/covidtracking/states-daily.json +- '@id': https://renkulab.io/blob/ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658/data/covidtracking/states-metadata.json + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': data/covidtracking/states-metadata.json@ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658 + http://www.w3.org/ns/prov#atLocation: + - '@value': data/covidtracking/states-metadata.json +- '@id': https://renkulab.io/blob/ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658/runs/download-covidtracking-data.runs.ipynb + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': runs/download-covidtracking-data.runs.ipynb@ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658 + http://www.w3.org/ns/prov#atLocation: + - '@value': runs/download-covidtracking-data.runs.ipynb +- '@id': https://renkulab.io/blob/d754df040a4bf8f7cb7ae6ed4151830f9bb0f520/notebooks/process/download-covidtracking-data.ipynb + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': notebooks/process/download-covidtracking-data.ipynb@d754df040a4bf8f7cb7ae6ed4151830f9bb0f520 + http://www.w3.org/ns/prov#atLocation: + - '@value': notebooks/process/download-covidtracking-data.ipynb +- '@id': https://renkulab.io/blob/f69f8d0fde70a57509a3cb311233ce7c3db22333/data/covidtracking + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Collection + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': data/covidtracking@f69f8d0fde70a57509a3cb311233ce7c3db22333 + http://www.w3.org/ns/prov#atLocation: + - '@value': data/covidtracking + http://www.w3.org/ns/prov#hadMember: + - '@id': https://renkulab.io/blob/f69f8d0fde70a57509a3cb311233ce7c3db22333/data/covidtracking/states-daily.json + - '@id': https://renkulab.io/blob/f69f8d0fde70a57509a3cb311233ce7c3db22333/data/covidtracking/states-metadata.json + http://www.w3.org/ns/prov#qualifiedGeneration: + - '@id': https://localhost/activities/commit/f69f8d0fde70a57509a3cb311233ce7c3db22333/steps/step_1/outputs/2 +- '@id': https://renkulab.io/blob/f69f8d0fde70a57509a3cb311233ce7c3db22333/data/covidtracking/states-daily.json + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': data/covidtracking/states-daily.json@f69f8d0fde70a57509a3cb311233ce7c3db22333 + http://www.w3.org/ns/prov#atLocation: + - '@value': data/covidtracking/states-daily.json + http://www.w3.org/ns/prov#qualifiedGeneration: + - '@id': https://localhost/activities/commit/f69f8d0fde70a57509a3cb311233ce7c3db22333/steps/step_1/tree/data/covidtracking/states-daily.json +- '@id': https://renkulab.io/blob/f69f8d0fde70a57509a3cb311233ce7c3db22333/data/covidtracking/states-metadata.json + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': data/covidtracking/states-metadata.json@f69f8d0fde70a57509a3cb311233ce7c3db22333 + http://www.w3.org/ns/prov#atLocation: + - '@value': data/covidtracking/states-metadata.json + http://www.w3.org/ns/prov#qualifiedGeneration: + - '@id': https://localhost/activities/commit/f69f8d0fde70a57509a3cb311233ce7c3db22333/steps/step_1/tree/data/covidtracking/states-metadata.json +- '@id': https://renkulab.io/blob/f69f8d0fde70a57509a3cb311233ce7c3db22333/runs/download-covidtracking-data.runs.ipynb + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': runs/download-covidtracking-data.runs.ipynb@f69f8d0fde70a57509a3cb311233ce7c3db22333 + http://www.w3.org/ns/prov#atLocation: + - '@value': runs/download-covidtracking-data.runs.ipynb + http://www.w3.org/ns/prov#qualifiedGeneration: + - '@id': https://localhost/activities/commit/f69f8d0fde70a57509a3cb311233ce7c3db22333/steps/step_1/outputs/4 +- '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + '@type': + - http://schema.org/Project + - http://www.w3.org/ns/prov#Location + http://schema.org/agent: + - '@value': pre-0.11.0 + http://schema.org/creator: + - '@id': mailto:cramakri@ethz.ch + http://schema.org/dateCreated: + - '@value': '2020-03-11T21:43:12.736000+00:00' + http://schema.org/name: + - '@value': covid-19-dashboard + http://schema.org/schemaVersion: + - '@value': '4' + https://swissdatasciencecenter.github.io/renku-ontology#automatedTemplateUpdate: + - '@value': false + https://swissdatasciencecenter.github.io/renku-ontology#immutableTemplateFiles: [] +- '@id': https://renkulab.io/runs/519ff9b19ca7abc0026ee5a38f72db6eae55e42f + '@type': + - http://www.w3.org/ns/prov#Entity + - http://www.w3.org/ns/prov#Plan + - https://swissdatasciencecenter.github.io/renku-ontology#Run + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://schema.org/keywords: [] + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': .renku/workflow/a17d560c41a54f5aa307ce5f3c5effe5_papermill.cwl@ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658 + http://www.w3.org/ns/prov#atLocation: + - '@value': .renku/workflow/a17d560c41a54f5aa307ce5f3c5effe5_papermill.cwl + https://swissdatasciencecenter.github.io/renku-ontology#command: + - '@value': papermill + https://swissdatasciencecenter.github.io/renku-ontology#hasArguments: + - '@id': https://renkulab.io/runs/519ff9b19ca7abc0026ee5a38f72db6eae55e42f/arguments/1 + https://swissdatasciencecenter.github.io/renku-ontology#hasInputs: + - '@id': https://renkulab.io/runs/519ff9b19ca7abc0026ee5a38f72db6eae55e42f/inputs/3 + https://swissdatasciencecenter.github.io/renku-ontology#hasOutputs: + - '@id': https://renkulab.io/runs/519ff9b19ca7abc0026ee5a38f72db6eae55e42f/outputs/4 + - '@id': https://renkulab.io/runs/519ff9b19ca7abc0026ee5a38f72db6eae55e42f/outputs/2 + https://swissdatasciencecenter.github.io/renku-ontology#hasRunParameters: [] + https://swissdatasciencecenter.github.io/renku-ontology#hasSubprocess: [] + https://swissdatasciencecenter.github.io/renku-ontology#successCodes: [] +- '@id': https://renkulab.io/runs/519ff9b19ca7abc0026ee5a38f72db6eae55e42f/arguments/1 + '@type': + - https://swissdatasciencecenter.github.io/renku-ontology#CommandArgument + - https://swissdatasciencecenter.github.io/renku-ontology#CommandParameter + http://schema.org/defaultValue: + - '@value': out_folder + http://schema.org/name: + - '@value': p-1 + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': Command Argument "None" + https://swissdatasciencecenter.github.io/renku-ontology#position: + - '@value': 1 + https://swissdatasciencecenter.github.io/renku-ontology#prefix: + - '@value': '-p ' + https://swissdatasciencecenter.github.io/renku-ontology#value: + - '@value': out_folder +- '@id': https://renkulab.io/runs/519ff9b19ca7abc0026ee5a38f72db6eae55e42f/inputs/3 + '@type': + - https://swissdatasciencecenter.github.io/renku-ontology#CommandInput + - https://swissdatasciencecenter.github.io/renku-ontology#CommandParameter + http://schema.org/defaultValue: + - '@value': notebooks/process/download-covidtracking-data.ipynb + http://schema.org/name: + - '@value': inject-paths-3 + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': Command Input "None" + https://swissdatasciencecenter.github.io/renku-ontology#consumes: + - '@id': https://renkulab.io/blob/d754df040a4bf8f7cb7ae6ed4151830f9bb0f520/notebooks/process/download-covidtracking-data.ipynb + https://swissdatasciencecenter.github.io/renku-ontology#position: + - '@value': 3 + https://swissdatasciencecenter.github.io/renku-ontology#prefix: + - '@value': '--inject-paths ' +- '@id': https://renkulab.io/runs/519ff9b19ca7abc0026ee5a38f72db6eae55e42f/outputs/2 + '@type': + - https://swissdatasciencecenter.github.io/renku-ontology#CommandOutput + - https://swissdatasciencecenter.github.io/renku-ontology#CommandParameter + http://schema.org/defaultValue: + - '@value': data/covidtracking + http://schema.org/name: + - '@value': output-2 + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': Command Output "None" + https://swissdatasciencecenter.github.io/renku-ontology#createFolder: + - '@value': true + https://swissdatasciencecenter.github.io/renku-ontology#position: + - '@value': 2 + https://swissdatasciencecenter.github.io/renku-ontology#produces: + - '@id': https://renkulab.io/blob/ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658/data/covidtracking +- '@id': https://renkulab.io/runs/519ff9b19ca7abc0026ee5a38f72db6eae55e42f/outputs/4 + '@type': + - https://swissdatasciencecenter.github.io/renku-ontology#CommandOutput + - https://swissdatasciencecenter.github.io/renku-ontology#CommandParameter + http://schema.org/defaultValue: + - '@value': runs/download-covidtracking-data.runs.ipynb + http://schema.org/name: + - '@value': output-4 + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': Command Output "None" + https://swissdatasciencecenter.github.io/renku-ontology#createFolder: + - '@value': true + https://swissdatasciencecenter.github.io/renku-ontology#position: + - '@value': 4 + https://swissdatasciencecenter.github.io/renku-ontology#produces: + - '@id': https://renkulab.io/blob/ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658/runs/download-covidtracking-data.runs.ipynb +- '@id': https://renkulab.io/runs/6c3ee48fd3a1b42c81d8caff5603cd026576ac55 + '@type': + - http://www.w3.org/ns/prov#Entity + - http://www.w3.org/ns/prov#Plan + - https://swissdatasciencecenter.github.io/renku-ontology#Run + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://schema.org/keywords: [] + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': .renku/workflow/a5f98d3aeed14de48b85f313a9f17aee.cwl@f69f8d0fde70a57509a3cb311233ce7c3db22333 + http://www.w3.org/ns/prov#atLocation: + - '@value': .renku/workflow/9e6bf6fd499646a6a3be5d57c5c761cc_migrated.yaml + https://swissdatasciencecenter.github.io/renku-ontology#hasArguments: [] + https://swissdatasciencecenter.github.io/renku-ontology#hasInputs: + - '@id': https://renkulab.io/runs/6c3ee48fd3a1b42c81d8caff5603cd026576ac55/steps/step_1/inputs/3 + https://swissdatasciencecenter.github.io/renku-ontology#hasOutputs: + - '@id': https://renkulab.io/runs/6c3ee48fd3a1b42c81d8caff5603cd026576ac55/steps/step_1/outputs/4 + - '@id': https://renkulab.io/runs/6c3ee48fd3a1b42c81d8caff5603cd026576ac55/steps/step_1/outputs/2 + https://swissdatasciencecenter.github.io/renku-ontology#hasRunParameters: [] + https://swissdatasciencecenter.github.io/renku-ontology#hasSubprocess: + - '@id': https://renkulab.io/runs/6c3ee48fd3a1b42c81d8caff5603cd026576ac55/subprocess/1 + https://swissdatasciencecenter.github.io/renku-ontology#successCodes: [] +- '@id': https://renkulab.io/runs/6c3ee48fd3a1b42c81d8caff5603cd026576ac55/steps/step_1/inputs/3 + '@type': + - https://swissdatasciencecenter.github.io/renku-ontology#CommandInput + - https://swissdatasciencecenter.github.io/renku-ontology#CommandParameter + http://schema.org/defaultValue: + - '@value': notebooks/process/download-covidtracking-data.ipynb + http://schema.org/name: + - '@value': inject-paths-3 + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': Command Input "None" + https://swissdatasciencecenter.github.io/renku-ontology#consumes: + - '@id': https://renkulab.io/blob/d754df040a4bf8f7cb7ae6ed4151830f9bb0f520/notebooks/process/download-covidtracking-data.ipynb + https://swissdatasciencecenter.github.io/renku-ontology#position: + - '@value': 3 + https://swissdatasciencecenter.github.io/renku-ontology#prefix: + - '@value': '--inject-paths ' +- '@id': https://renkulab.io/runs/6c3ee48fd3a1b42c81d8caff5603cd026576ac55/steps/step_1/outputs/2 + '@type': + - https://swissdatasciencecenter.github.io/renku-ontology#CommandOutput + - https://swissdatasciencecenter.github.io/renku-ontology#CommandParameter + http://schema.org/defaultValue: + - '@value': data/covidtracking + http://schema.org/name: + - '@value': output-2 + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': Command Output "None" + https://swissdatasciencecenter.github.io/renku-ontology#createFolder: + - '@value': true + https://swissdatasciencecenter.github.io/renku-ontology#position: + - '@value': 2 + https://swissdatasciencecenter.github.io/renku-ontology#produces: + - '@id': https://renkulab.io/blob/ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658/data/covidtracking +- '@id': https://renkulab.io/runs/6c3ee48fd3a1b42c81d8caff5603cd026576ac55/steps/step_1/outputs/4 + '@type': + - https://swissdatasciencecenter.github.io/renku-ontology#CommandOutput + - https://swissdatasciencecenter.github.io/renku-ontology#CommandParameter + http://schema.org/defaultValue: + - '@value': runs/download-covidtracking-data.runs.ipynb + http://schema.org/name: + - '@value': output-4 + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': Command Output "None" + https://swissdatasciencecenter.github.io/renku-ontology#createFolder: + - '@value': true + https://swissdatasciencecenter.github.io/renku-ontology#position: + - '@value': 4 + https://swissdatasciencecenter.github.io/renku-ontology#produces: + - '@id': https://renkulab.io/blob/ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658/runs/download-covidtracking-data.runs.ipynb +- '@id': https://renkulab.io/runs/6c3ee48fd3a1b42c81d8caff5603cd026576ac55/subprocess/1 + '@type': + - https://swissdatasciencecenter.github.io/renku-ontology#OrderedSubprocess + https://swissdatasciencecenter.github.io/renku-ontology#index: + - '@value': 1 + https://swissdatasciencecenter.github.io/renku-ontology#process: + - '@id': https://renkulab.io/runs/519ff9b19ca7abc0026ee5a38f72db6eae55e42f +- '@id': mailto:beepbop@example.com + '@type': + - http://schema.org/Person + - http://www.w3.org/ns/prov#Person + http://schema.org/email: + - '@value': beepbop@example.com + http://schema.org/name: + - '@value': CR (covid cron) + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': CR (covid cron) +- '@id': mailto:cramakri@ethz.ch + '@type': + - http://schema.org/Person + - http://www.w3.org/ns/prov#Person + http://schema.org/email: + - '@value': cramakri@ethz.ch + http://schema.org/name: + - '@value': Chandrasekhar Ramakrishnan + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': Chandrasekhar Ramakrishnan diff --git a/.renku/workflow/a5f98d3aeed14de48b85f313a9f17aee.cwl b/.renku/workflow/a5f98d3aeed14de48b85f313a9f17aee.cwl deleted file mode 100644 index 39ada0e7d..000000000 --- a/.renku/workflow/a5f98d3aeed14de48b85f313a9f17aee.cwl +++ /dev/null @@ -1,120 +0,0 @@ -class: Workflow -cwlVersion: v1.0 -hints: [] -inputs: - input_1: - default: states-daily.json - streamable: false - type: string - input_2: - default: states-metadata.json - streamable: false - type: string - input_3: - default: out_folder - streamable: false - type: string - input_4: - default: data/covidtracking - streamable: false - type: string - input_5: - default: - class: File - path: ../../notebooks/process/download-covidtracking-data.ipynb - streamable: false - type: File - input_6: - default: runs/download-covidtracking-data.runs.ipynb - streamable: false - type: string -outputs: - output_0: - outputSource: step_3/output_1 - streamable: false - type: Directory - output_3: - outputSource: step_3/output_0 - streamable: false - type: File -requirements: [] -steps: - step_1: - in: - filename: input_1 - input_directory: step_3/output_1 - out: - - output_file - run: - arguments: [] - baseCommand: - - 'true' - class: CommandLineTool - cwlVersion: v1.0 - hints: [] - inputs: - filename: - default: states-daily.json - streamable: false - type: string - input_directory: - streamable: false - type: Directory - outputs: - output_file: - outputBinding: - glob: $(inputs.filename) - streamable: false - type: File - permanentFailCodes: [] - requirements: - - &id001 - class: InlineJavascriptRequirement - - &id002 - class: InitialWorkDirRequirement - listing: $(inputs.input_directory.listing) - successCodes: [] - temporaryFailCodes: [] - step_2: - in: - filename: input_2 - input_directory: step_3/output_1 - out: - - output_file - run: - arguments: [] - baseCommand: - - 'true' - class: CommandLineTool - cwlVersion: v1.0 - hints: [] - inputs: - filename: - default: states-metadata.json - streamable: false - type: string - input_directory: - streamable: false - type: Directory - outputs: - output_file: - outputBinding: - glob: $(inputs.filename) - streamable: false - type: File - permanentFailCodes: [] - requirements: - - *id001 - - *id002 - successCodes: [] - temporaryFailCodes: [] - step_3: - in: - input_1: input_3 - input_2: input_4 - input_3: input_5 - input_4: input_6 - out: - - output_0 - - output_1 - run: a17d560c41a54f5aa307ce5f3c5effe5_papermill.cwl -- GitLab