diff --git a/.renku/activity_index.yaml b/.renku/activity_index.yaml index 0f89f9e8d4c37beb02e8590f64f944bf96165089..d15674bc3bd556358a9a364de2756a360a65d24a 100644 --- a/.renku/activity_index.yaml +++ b/.renku/activity_index.yaml @@ -385,6 +385,8 @@ data/covidtracking: - .renku/workflow/9b6e2804090c47dcaea9d18a4990f187_migrated.yaml 9122a1f49a500a96080d0e6a1736faf3d1d2b057: - .renku/workflow/cc5758054c3b4017ba8fe68ce958d1fb_migrated.yaml + 91ecd5ac3db8a27216d4d47bb333022b1e487de1: + - .renku/workflow/44dda8fe7f034a078384155680a1a77d_migrated.yaml 925756b69c27cff7df779633d5b0598a086784e3: - .renku/workflow/a93bfddf23cb47018287aae229ada608_migrated.yaml 967fa3910ba7792fedc93b6e497bfeb9f587ec88: @@ -873,6 +875,8 @@ data/covidtracking/states-daily.json: - .renku/workflow/b5e88e02f810476bbff5cdab58468563_migrated.yaml 9122a1f49a500a96080d0e6a1736faf3d1d2b057: - .renku/workflow/cc5758054c3b4017ba8fe68ce958d1fb_migrated.yaml + 91ecd5ac3db8a27216d4d47bb333022b1e487de1: + - .renku/workflow/44dda8fe7f034a078384155680a1a77d_migrated.yaml 925756b69c27cff7df779633d5b0598a086784e3: - .renku/workflow/a93bfddf23cb47018287aae229ada608_migrated.yaml 96a83522ca91fe1c9f3306697430d50df207d2ec: @@ -1356,6 +1360,8 @@ data/covidtracking/states-metadata.json: - .renku/workflow/9b6e2804090c47dcaea9d18a4990f187_migrated.yaml 9122a1f49a500a96080d0e6a1736faf3d1d2b057: - .renku/workflow/cc5758054c3b4017ba8fe68ce958d1fb_migrated.yaml + 91ecd5ac3db8a27216d4d47bb333022b1e487de1: + - .renku/workflow/44dda8fe7f034a078384155680a1a77d_migrated.yaml 925756b69c27cff7df779633d5b0598a086784e3: - .renku/workflow/a93bfddf23cb47018287aae229ada608_migrated.yaml 967fa3910ba7792fedc93b6e497bfeb9f587ec88: @@ -2838,6 +2844,8 @@ runs/download-covidtracking-data.runs.ipynb: - .renku/workflow/9b6e2804090c47dcaea9d18a4990f187_migrated.yaml 9122a1f49a500a96080d0e6a1736faf3d1d2b057: - .renku/workflow/cc5758054c3b4017ba8fe68ce958d1fb_migrated.yaml + 91ecd5ac3db8a27216d4d47bb333022b1e487de1: + - .renku/workflow/44dda8fe7f034a078384155680a1a77d_migrated.yaml 925756b69c27cff7df779633d5b0598a086784e3: - .renku/workflow/a93bfddf23cb47018287aae229ada608_migrated.yaml 967fa3910ba7792fedc93b6e497bfeb9f587ec88: diff --git a/.renku/workflow/1a6aade63cae4283bb644ed4a14adec0.cwl b/.renku/workflow/1a6aade63cae4283bb644ed4a14adec0.cwl deleted file mode 100644 index d2f1ef92028a09b921f855c6767ffeb35123d531..0000000000000000000000000000000000000000 --- a/.renku/workflow/1a6aade63cae4283bb644ed4a14adec0.cwl +++ /dev/null @@ -1,120 +0,0 @@ -class: Workflow -cwlVersion: v1.0 -hints: [] -inputs: - input_1: - default: states-metadata.json - streamable: false - type: string - input_2: - default: states-daily.json - streamable: false - type: string - input_3: - default: out_folder - streamable: false - type: string - input_4: - default: data/covidtracking - streamable: false - type: string - input_5: - default: - class: File - path: ../../notebooks/process/download-covidtracking-data.ipynb - streamable: false - type: File - input_6: - default: runs/download-covidtracking-data.runs.ipynb - streamable: false - type: string -outputs: - output_1: - outputSource: step_3/output_0 - streamable: false - type: File - output_3: - outputSource: step_3/output_1 - streamable: false - type: Directory -requirements: [] -steps: - step_1: - in: - filename: input_1 - input_directory: step_3/output_1 - out: - - output_file - run: - arguments: [] - baseCommand: - - 'true' - class: CommandLineTool - cwlVersion: v1.0 - hints: [] - inputs: - filename: - default: states-metadata.json - streamable: false - type: string - input_directory: - streamable: false - type: Directory - outputs: - output_file: - outputBinding: - glob: $(inputs.filename) - streamable: false - type: File - permanentFailCodes: [] - requirements: - - &id001 - class: InlineJavascriptRequirement - - &id002 - class: InitialWorkDirRequirement - listing: $(inputs.input_directory.listing) - successCodes: [] - temporaryFailCodes: [] - step_2: - in: - filename: input_2 - input_directory: step_3/output_1 - out: - - output_file - run: - arguments: [] - baseCommand: - - 'true' - class: CommandLineTool - cwlVersion: v1.0 - hints: [] - inputs: - filename: - default: states-daily.json - streamable: false - type: string - input_directory: - streamable: false - type: Directory - outputs: - output_file: - outputBinding: - glob: $(inputs.filename) - streamable: false - type: File - permanentFailCodes: [] - requirements: - - *id001 - - *id002 - successCodes: [] - temporaryFailCodes: [] - step_3: - in: - input_1: input_3 - input_2: input_4 - input_3: input_5 - input_4: input_6 - out: - - output_1 - - output_0 - run: a17d560c41a54f5aa307ce5f3c5effe5_papermill.cwl diff --git a/.renku/workflow/44dda8fe7f034a078384155680a1a77d_migrated.yaml b/.renku/workflow/44dda8fe7f034a078384155680a1a77d_migrated.yaml new file mode 100644 index 0000000000000000000000000000000000000000..c1f485b1fdf671c48679a579a5b759dcd6d130f6 --- /dev/null +++ b/.renku/workflow/44dda8fe7f034a078384155680a1a77d_migrated.yaml @@ -0,0 +1,434 @@ +- '@id': https://github.com/swissdatasciencecenter/renku-python/tree/v0.10.4 + '@type': + - http://purl.org/wf4ever/wfprov#WorkflowEngine + - http://www.w3.org/ns/prov#SoftwareAgent + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': renku 0.10.4 +- '@id': https://github.com/swissdatasciencecenter/renku-python/tree/v0.15.1 + '@type': + - http://purl.org/wf4ever/wfprov#WorkflowEngine + - http://www.w3.org/ns/prov#SoftwareAgent + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': renku 0.15.1 +- '@id': https://localhost/activities/commit/91ecd5ac3db8a27216d4d47bb333022b1e487de1 + '@type': + - http://purl.org/wf4ever/wfprov#ProcessRun + - http://purl.org/wf4ever/wfprov#WorkflowRun + - http://www.w3.org/ns/prov#Activity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#comment: + - '@value': renku rerun data/covidtracking/states-metadata.json data/covidtracking/states-daily.json + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': .renku/workflow/44dda8fe7f034a078384155680a1a77d_migrated.yaml@91ecd5ac3db8a27216d4d47bb333022b1e487de1 + http://www.w3.org/ns/prov#atLocation: + - '@value': .renku/workflow/44dda8fe7f034a078384155680a1a77d_migrated.yaml + http://www.w3.org/ns/prov#endedAtTime: + - '@type': http://www.w3.org/2001/XMLSchema#dateTime + '@value': '2020-12-06T07:36:46+00:00' + http://www.w3.org/ns/prov#influenced: [] + http://www.w3.org/ns/prov#qualifiedAssociation: + - '@id': https://localhost/activities/commit/91ecd5ac3db8a27216d4d47bb333022b1e487de1/association + http://www.w3.org/ns/prov#qualifiedUsage: + - '@id': https://localhost/activities/commit/91ecd5ac3db8a27216d4d47bb333022b1e487de1/inputs/1 + http://www.w3.org/ns/prov#startedAtTime: + - '@type': http://www.w3.org/2001/XMLSchema#dateTime + '@value': '2020-12-06T07:36:46+00:00' + http://www.w3.org/ns/prov#wasAssociatedWith: + - '@id': mailto:beepbop@example.com + - '@id': https://github.com/swissdatasciencecenter/renku-python/tree/v0.15.1 + http://www.w3.org/ns/prov#wasInformedBy: + - '@id': https://localhost/activities/commit/384cfb8e157ec1dd8c04ef89b51f33cb3235a82e +- '@id': https://localhost/activities/commit/91ecd5ac3db8a27216d4d47bb333022b1e487de1/association + '@type': + - http://www.w3.org/ns/prov#Association + http://www.w3.org/ns/prov#agent: + - '@id': https://github.com/swissdatasciencecenter/renku-python/tree/v0.10.4 + http://www.w3.org/ns/prov#hadPlan: + - '@id': https://renkulab.io/runs/fc5f768186d95ae715292c88159974a7c33ff3d1 +- '@id': https://localhost/activities/commit/91ecd5ac3db8a27216d4d47bb333022b1e487de1/inputs/1 + '@type': + - http://www.w3.org/ns/prov#Usage + http://www.w3.org/ns/prov#entity: + - '@id': https://renkulab.io/blob/d754df040a4bf8f7cb7ae6ed4151830f9bb0f520/notebooks/process/download-covidtracking-data.ipynb + http://www.w3.org/ns/prov#hadRole: + - '@value': steps/step_1/inputs/3 +- '@id': https://localhost/activities/commit/91ecd5ac3db8a27216d4d47bb333022b1e487de1/steps/step_1 + '@type': + - http://purl.org/wf4ever/wfprov#ProcessRun + - http://www.w3.org/ns/prov#Activity + http://purl.org/wf4ever/wfprov#wasPartOfWorkflowRun: + - '@id': https://localhost/activities/commit/91ecd5ac3db8a27216d4d47bb333022b1e487de1 + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#comment: + - '@value': renku rerun data/covidtracking/states-metadata.json data/covidtracking/states-daily.json + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': .renku/workflow/44dda8fe7f034a078384155680a1a77d_migrated.yaml@91ecd5ac3db8a27216d4d47bb333022b1e487de1 + http://www.w3.org/ns/prov#atLocation: + - '@value': .renku/workflow/44dda8fe7f034a078384155680a1a77d_migrated.yaml + http://www.w3.org/ns/prov#endedAtTime: + - '@type': http://www.w3.org/2001/XMLSchema#dateTime + '@value': '2020-12-06T07:36:46+00:00' + http://www.w3.org/ns/prov#influenced: [] + http://www.w3.org/ns/prov#qualifiedAssociation: + - '@id': https://localhost/activities/commit/91ecd5ac3db8a27216d4d47bb333022b1e487de1/steps/step_1/association + http://www.w3.org/ns/prov#qualifiedUsage: + - '@id': https://localhost/activities/commit/91ecd5ac3db8a27216d4d47bb333022b1e487de1/steps/step_1/inputs/3 + http://www.w3.org/ns/prov#startedAtTime: + - '@type': http://www.w3.org/2001/XMLSchema#dateTime + '@value': '2020-12-06T07:36:46+00:00' + http://www.w3.org/ns/prov#wasAssociatedWith: + - '@id': mailto:beepbop@example.com + - '@id': https://github.com/swissdatasciencecenter/renku-python/tree/v0.15.1 + http://www.w3.org/ns/prov#wasInformedBy: + - '@id': https://localhost/activities/commit/384cfb8e157ec1dd8c04ef89b51f33cb3235a82e + https://swissdatasciencecenter.github.io/renku-ontology#hasRunParameter: [] +- '@id': https://localhost/activities/commit/91ecd5ac3db8a27216d4d47bb333022b1e487de1/steps/step_1/association + '@type': + - http://www.w3.org/ns/prov#Association + http://www.w3.org/ns/prov#agent: + - '@id': https://github.com/swissdatasciencecenter/renku-python/tree/v0.10.4 + http://www.w3.org/ns/prov#hadPlan: + - '@id': https://renkulab.io/runs/d76e5190e16361e657ae1f34ea8c38d77293f546 +- '@id': https://localhost/activities/commit/91ecd5ac3db8a27216d4d47bb333022b1e487de1/steps/step_1/inputs/3 + '@type': + - http://www.w3.org/ns/prov#Usage + http://www.w3.org/ns/prov#entity: + - '@id': https://renkulab.io/blob/d754df040a4bf8f7cb7ae6ed4151830f9bb0f520/notebooks/process/download-covidtracking-data.ipynb + http://www.w3.org/ns/prov#hadRole: + - '@value': inputs/3 +- '@id': https://localhost/activities/commit/91ecd5ac3db8a27216d4d47bb333022b1e487de1/steps/step_1/outputs/2 + '@type': + - http://www.w3.org/ns/prov#Generation + http://www.w3.org/ns/prov#activity: + - '@id': https://localhost/activities/commit/91ecd5ac3db8a27216d4d47bb333022b1e487de1/steps/step_1 + - '@id': https://localhost/activities/commit/91ecd5ac3db8a27216d4d47bb333022b1e487de1 + http://www.w3.org/ns/prov#hadRole: + - '@value': outputs/2 +- '@id': https://localhost/activities/commit/91ecd5ac3db8a27216d4d47bb333022b1e487de1/steps/step_1/outputs/4 + '@type': + - http://www.w3.org/ns/prov#Generation + http://www.w3.org/ns/prov#activity: + - '@id': https://localhost/activities/commit/91ecd5ac3db8a27216d4d47bb333022b1e487de1/steps/step_1 + - '@id': https://localhost/activities/commit/91ecd5ac3db8a27216d4d47bb333022b1e487de1 + http://www.w3.org/ns/prov#hadRole: + - '@value': outputs/4 +- '@id': https://localhost/activities/commit/91ecd5ac3db8a27216d4d47bb333022b1e487de1/steps/step_1/tree/data/covidtracking/states-daily.json + '@type': + - http://www.w3.org/ns/prov#Generation + http://www.w3.org/ns/prov#activity: + - '@id': https://localhost/activities/commit/91ecd5ac3db8a27216d4d47bb333022b1e487de1 +- '@id': https://localhost/activities/commit/91ecd5ac3db8a27216d4d47bb333022b1e487de1/steps/step_1/tree/data/covidtracking/states-metadata.json + '@type': + - http://www.w3.org/ns/prov#Generation + http://www.w3.org/ns/prov#activity: + - '@id': https://localhost/activities/commit/91ecd5ac3db8a27216d4d47bb333022b1e487de1 +- '@id': https://renkulab.io/blob/91ecd5ac3db8a27216d4d47bb333022b1e487de1/data/covidtracking + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Collection + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': data/covidtracking@91ecd5ac3db8a27216d4d47bb333022b1e487de1 + http://www.w3.org/ns/prov#atLocation: + - '@value': data/covidtracking + http://www.w3.org/ns/prov#hadMember: + - '@id': https://renkulab.io/blob/91ecd5ac3db8a27216d4d47bb333022b1e487de1/data/covidtracking/states-daily.json + - '@id': https://renkulab.io/blob/91ecd5ac3db8a27216d4d47bb333022b1e487de1/data/covidtracking/states-metadata.json + http://www.w3.org/ns/prov#qualifiedGeneration: + - '@id': https://localhost/activities/commit/91ecd5ac3db8a27216d4d47bb333022b1e487de1/steps/step_1/outputs/2 +- '@id': https://renkulab.io/blob/91ecd5ac3db8a27216d4d47bb333022b1e487de1/data/covidtracking/states-daily.json + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': data/covidtracking/states-daily.json@91ecd5ac3db8a27216d4d47bb333022b1e487de1 + http://www.w3.org/ns/prov#atLocation: + - '@value': data/covidtracking/states-daily.json + http://www.w3.org/ns/prov#qualifiedGeneration: + - '@id': https://localhost/activities/commit/91ecd5ac3db8a27216d4d47bb333022b1e487de1/steps/step_1/tree/data/covidtracking/states-daily.json +- '@id': https://renkulab.io/blob/91ecd5ac3db8a27216d4d47bb333022b1e487de1/data/covidtracking/states-metadata.json + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': data/covidtracking/states-metadata.json@91ecd5ac3db8a27216d4d47bb333022b1e487de1 + http://www.w3.org/ns/prov#atLocation: + - '@value': data/covidtracking/states-metadata.json + http://www.w3.org/ns/prov#qualifiedGeneration: + - '@id': https://localhost/activities/commit/91ecd5ac3db8a27216d4d47bb333022b1e487de1/steps/step_1/tree/data/covidtracking/states-metadata.json +- '@id': https://renkulab.io/blob/91ecd5ac3db8a27216d4d47bb333022b1e487de1/runs/download-covidtracking-data.runs.ipynb + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': runs/download-covidtracking-data.runs.ipynb@91ecd5ac3db8a27216d4d47bb333022b1e487de1 + http://www.w3.org/ns/prov#atLocation: + - '@value': runs/download-covidtracking-data.runs.ipynb + http://www.w3.org/ns/prov#qualifiedGeneration: + - '@id': https://localhost/activities/commit/91ecd5ac3db8a27216d4d47bb333022b1e487de1/steps/step_1/outputs/4 +- '@id': https://renkulab.io/blob/ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658/data/covidtracking + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Collection + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': data/covidtracking@ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658 + http://www.w3.org/ns/prov#atLocation: + - '@value': data/covidtracking + http://www.w3.org/ns/prov#hadMember: + - '@id': https://renkulab.io/blob/ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658/data/covidtracking/states-daily.json + - '@id': https://renkulab.io/blob/ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658/data/covidtracking/states-metadata.json +- '@id': https://renkulab.io/blob/ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658/data/covidtracking/states-daily.json + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - 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