diff --git a/.renku/activity_index.yaml b/.renku/activity_index.yaml index dbe35ae139dce91fea65c4f4d0dd6457371506e1..3d9b831faca5b9d0e52a7f18e37303bb321086f8 100644 --- a/.renku/activity_index.yaml +++ b/.renku/activity_index.yaml @@ -105,6 +105,8 @@ data/covidtracking: - .renku/workflow/c70f51d9c328486c8cab59b6069fc33c_migrated.yaml 0718701047bc806c5faa5ac0b5ffb2550f969160: - .renku/workflow/98b30042c5b14df8b1b8131e454ebeb9_migrated.yaml + 0c305ef9368eeb8ab724200be84acd0fb2602628: + - .renku/workflow/77f2124056974c42aa4c11f71485b8ee_migrated.yaml 0d5653f6f7b2cc403c7c46b635f0d12d174ae14f: - .renku/workflow/8da881c51db74c959f4663e38c28ef24_migrated.yaml 0f9d19a78eef08e4a8bd78435a78bc32bcb1ba68: @@ -489,6 +491,8 @@ data/covidtracking/states-daily.json: - .renku/workflow/c70f51d9c328486c8cab59b6069fc33c_migrated.yaml 0718701047bc806c5faa5ac0b5ffb2550f969160: - .renku/workflow/98b30042c5b14df8b1b8131e454ebeb9_migrated.yaml + 0c305ef9368eeb8ab724200be84acd0fb2602628: + - .renku/workflow/77f2124056974c42aa4c11f71485b8ee_migrated.yaml 0d5653f6f7b2cc403c7c46b635f0d12d174ae14f: - .renku/workflow/8da881c51db74c959f4663e38c28ef24_migrated.yaml 0f9d19a78eef08e4a8bd78435a78bc32bcb1ba68: @@ -864,6 +868,8 @@ data/covidtracking/states-metadata.json: - .renku/workflow/c70f51d9c328486c8cab59b6069fc33c_migrated.yaml 0718701047bc806c5faa5ac0b5ffb2550f969160: - .renku/workflow/98b30042c5b14df8b1b8131e454ebeb9_migrated.yaml + 0c305ef9368eeb8ab724200be84acd0fb2602628: + - .renku/workflow/77f2124056974c42aa4c11f71485b8ee_migrated.yaml 0d5653f6f7b2cc403c7c46b635f0d12d174ae14f: - .renku/workflow/8da881c51db74c959f4663e38c28ef24_migrated.yaml 0f9d19a78eef08e4a8bd78435a78bc32bcb1ba68: @@ -2180,6 +2186,8 @@ runs/download-covidtracking-data.runs.ipynb: - .renku/workflow/c70f51d9c328486c8cab59b6069fc33c_migrated.yaml 0718701047bc806c5faa5ac0b5ffb2550f969160: - .renku/workflow/98b30042c5b14df8b1b8131e454ebeb9_migrated.yaml + 0c305ef9368eeb8ab724200be84acd0fb2602628: + - .renku/workflow/77f2124056974c42aa4c11f71485b8ee_migrated.yaml 0d5653f6f7b2cc403c7c46b635f0d12d174ae14f: - .renku/workflow/8da881c51db74c959f4663e38c28ef24_migrated.yaml 0f9d19a78eef08e4a8bd78435a78bc32bcb1ba68: diff --git a/.renku/workflow/6aa5ea2d03b14d689f578036249fe95d.cwl b/.renku/workflow/6aa5ea2d03b14d689f578036249fe95d.cwl deleted file mode 100644 index 0706b4c171457d8aa2cb7321e9e83debe45d2e6a..0000000000000000000000000000000000000000 --- a/.renku/workflow/6aa5ea2d03b14d689f578036249fe95d.cwl +++ /dev/null @@ -1,120 +0,0 @@ -class: Workflow -cwlVersion: v1.0 -hints: [] -inputs: - input_1: - default: out_folder - streamable: false - type: string - input_2: - default: data/covidtracking - streamable: false - type: string - input_3: - default: - class: File - path: ../../notebooks/process/download-covidtracking-data.ipynb - streamable: false - type: File - input_4: - default: runs/download-covidtracking-data.runs.ipynb - streamable: false - type: string - input_5: - default: states-metadata.json - streamable: false - type: string - input_6: - default: states-daily.json - streamable: false - type: string -outputs: - output_1: - outputSource: step_1/output_0 - streamable: false - type: File - output_2: - outputSource: step_1/output_1 - streamable: false - type: Directory -requirements: [] -steps: - step_1: - in: - input_1: input_1 - input_2: input_2 - input_3: input_3 - input_4: input_4 - out: - - output_1 - - output_0 - run: a17d560c41a54f5aa307ce5f3c5effe5_papermill.cwl - step_2: - in: - filename: input_5 - input_directory: step_1/output_1 - out: - - output_file - run: - arguments: [] - baseCommand: - - 'true' - class: CommandLineTool - cwlVersion: v1.0 - hints: [] - inputs: - filename: - default: states-metadata.json - streamable: false - type: string - input_directory: - streamable: false - type: Directory - outputs: - output_file: - outputBinding: - glob: $(inputs.filename) - streamable: false - type: File - permanentFailCodes: [] - requirements: - - &id001 - class: InlineJavascriptRequirement - - &id002 - class: InitialWorkDirRequirement - listing: $(inputs.input_directory.listing) - successCodes: [] - temporaryFailCodes: [] - step_3: - in: - filename: input_6 - input_directory: step_1/output_1 - out: - - output_file - run: - arguments: [] - baseCommand: - - 'true' - class: CommandLineTool - cwlVersion: v1.0 - hints: [] - inputs: - filename: - default: states-daily.json - streamable: false - type: string - input_directory: - streamable: false - type: Directory - outputs: - output_file: - outputBinding: - glob: $(inputs.filename) - streamable: false - type: File - permanentFailCodes: [] - requirements: - - *id001 - - *id002 - successCodes: [] - temporaryFailCodes: [] diff --git a/.renku/workflow/77f2124056974c42aa4c11f71485b8ee_migrated.yaml b/.renku/workflow/77f2124056974c42aa4c11f71485b8ee_migrated.yaml new file mode 100644 index 0000000000000000000000000000000000000000..2c04156c1db0c201b906a601540b1426b58d5e13 --- /dev/null +++ b/.renku/workflow/77f2124056974c42aa4c11f71485b8ee_migrated.yaml @@ -0,0 +1,434 @@ +- '@id': https://github.com/swissdatasciencecenter/renku-python/tree/v0.10.4 + '@type': + - http://purl.org/wf4ever/wfprov#WorkflowEngine + - http://www.w3.org/ns/prov#SoftwareAgent + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': renku 0.10.4 +- '@id': https://github.com/swissdatasciencecenter/renku-python/tree/v0.15.1 + '@type': + - http://purl.org/wf4ever/wfprov#WorkflowEngine + - http://www.w3.org/ns/prov#SoftwareAgent + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': renku 0.15.1 +- '@id': https://localhost/activities/commit/0c305ef9368eeb8ab724200be84acd0fb2602628 + '@type': + - http://purl.org/wf4ever/wfprov#ProcessRun + - http://purl.org/wf4ever/wfprov#WorkflowRun + - http://www.w3.org/ns/prov#Activity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#comment: + - '@value': renku rerun data/covidtracking/states-metadata.json data/covidtracking/states-daily.json + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': .renku/workflow/77f2124056974c42aa4c11f71485b8ee_migrated.yaml@0c305ef9368eeb8ab724200be84acd0fb2602628 + http://www.w3.org/ns/prov#atLocation: + - '@value': .renku/workflow/77f2124056974c42aa4c11f71485b8ee_migrated.yaml + http://www.w3.org/ns/prov#endedAtTime: + - '@type': http://www.w3.org/2001/XMLSchema#dateTime + '@value': '2020-10-10T07:36:44+00:00' + http://www.w3.org/ns/prov#influenced: [] + http://www.w3.org/ns/prov#qualifiedAssociation: + - '@id': https://localhost/activities/commit/0c305ef9368eeb8ab724200be84acd0fb2602628/association + http://www.w3.org/ns/prov#qualifiedUsage: + - '@id': https://localhost/activities/commit/0c305ef9368eeb8ab724200be84acd0fb2602628/inputs/1 + http://www.w3.org/ns/prov#startedAtTime: + - '@type': http://www.w3.org/2001/XMLSchema#dateTime + '@value': '2020-10-10T07:36:44+00:00' + http://www.w3.org/ns/prov#wasAssociatedWith: + - '@id': mailto:beepbop@example.com + - '@id': https://github.com/swissdatasciencecenter/renku-python/tree/v0.15.1 + http://www.w3.org/ns/prov#wasInformedBy: + - '@id': https://localhost/activities/commit/b13558b7a80f00798c31d53edd12967dba580b22 +- '@id': https://localhost/activities/commit/0c305ef9368eeb8ab724200be84acd0fb2602628/association + '@type': + - http://www.w3.org/ns/prov#Association + http://www.w3.org/ns/prov#agent: + - '@id': https://github.com/swissdatasciencecenter/renku-python/tree/v0.10.4 + http://www.w3.org/ns/prov#hadPlan: + - '@id': https://renkulab.io/runs/a3de5b0c391e57f1e650c2b079640d9753c391d1 +- '@id': https://localhost/activities/commit/0c305ef9368eeb8ab724200be84acd0fb2602628/inputs/1 + '@type': + - http://www.w3.org/ns/prov#Usage + http://www.w3.org/ns/prov#entity: + - '@id': https://renkulab.io/blob/d754df040a4bf8f7cb7ae6ed4151830f9bb0f520/notebooks/process/download-covidtracking-data.ipynb + http://www.w3.org/ns/prov#hadRole: + - '@value': steps/step_1/inputs/3 +- '@id': https://localhost/activities/commit/0c305ef9368eeb8ab724200be84acd0fb2602628/steps/step_1 + '@type': + - http://purl.org/wf4ever/wfprov#ProcessRun + - http://www.w3.org/ns/prov#Activity + http://purl.org/wf4ever/wfprov#wasPartOfWorkflowRun: + - '@id': https://localhost/activities/commit/0c305ef9368eeb8ab724200be84acd0fb2602628 + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#comment: + - '@value': renku rerun data/covidtracking/states-metadata.json data/covidtracking/states-daily.json + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': .renku/workflow/77f2124056974c42aa4c11f71485b8ee_migrated.yaml@0c305ef9368eeb8ab724200be84acd0fb2602628 + http://www.w3.org/ns/prov#atLocation: + - '@value': .renku/workflow/77f2124056974c42aa4c11f71485b8ee_migrated.yaml + http://www.w3.org/ns/prov#endedAtTime: + - '@type': http://www.w3.org/2001/XMLSchema#dateTime + '@value': '2020-10-10T07:36:44+00:00' + http://www.w3.org/ns/prov#influenced: [] + http://www.w3.org/ns/prov#qualifiedAssociation: + - '@id': https://localhost/activities/commit/0c305ef9368eeb8ab724200be84acd0fb2602628/steps/step_1/association + http://www.w3.org/ns/prov#qualifiedUsage: + - '@id': https://localhost/activities/commit/0c305ef9368eeb8ab724200be84acd0fb2602628/steps/step_1/inputs/3 + http://www.w3.org/ns/prov#startedAtTime: + - '@type': http://www.w3.org/2001/XMLSchema#dateTime + '@value': '2020-10-10T07:36:44+00:00' + http://www.w3.org/ns/prov#wasAssociatedWith: + - '@id': mailto:beepbop@example.com + - '@id': https://github.com/swissdatasciencecenter/renku-python/tree/v0.15.1 + http://www.w3.org/ns/prov#wasInformedBy: + - '@id': https://localhost/activities/commit/b13558b7a80f00798c31d53edd12967dba580b22 + https://swissdatasciencecenter.github.io/renku-ontology#hasRunParameter: [] +- '@id': https://localhost/activities/commit/0c305ef9368eeb8ab724200be84acd0fb2602628/steps/step_1/association + '@type': + - http://www.w3.org/ns/prov#Association + http://www.w3.org/ns/prov#agent: + - '@id': https://github.com/swissdatasciencecenter/renku-python/tree/v0.10.4 + http://www.w3.org/ns/prov#hadPlan: + - '@id': https://renkulab.io/runs/e0a8bd7f61c638f96a962ceb6566645043104852 +- '@id': https://localhost/activities/commit/0c305ef9368eeb8ab724200be84acd0fb2602628/steps/step_1/inputs/3 + '@type': + - http://www.w3.org/ns/prov#Usage + http://www.w3.org/ns/prov#entity: + - '@id': https://renkulab.io/blob/d754df040a4bf8f7cb7ae6ed4151830f9bb0f520/notebooks/process/download-covidtracking-data.ipynb + http://www.w3.org/ns/prov#hadRole: + - '@value': inputs/3 +- '@id': https://localhost/activities/commit/0c305ef9368eeb8ab724200be84acd0fb2602628/steps/step_1/outputs/2 + '@type': + - http://www.w3.org/ns/prov#Generation + http://www.w3.org/ns/prov#activity: + - '@id': https://localhost/activities/commit/0c305ef9368eeb8ab724200be84acd0fb2602628/steps/step_1 + - '@id': https://localhost/activities/commit/0c305ef9368eeb8ab724200be84acd0fb2602628 + http://www.w3.org/ns/prov#hadRole: + - '@value': outputs/2 +- '@id': https://localhost/activities/commit/0c305ef9368eeb8ab724200be84acd0fb2602628/steps/step_1/outputs/4 + '@type': + - http://www.w3.org/ns/prov#Generation + http://www.w3.org/ns/prov#activity: + - '@id': https://localhost/activities/commit/0c305ef9368eeb8ab724200be84acd0fb2602628/steps/step_1 + - '@id': https://localhost/activities/commit/0c305ef9368eeb8ab724200be84acd0fb2602628 + http://www.w3.org/ns/prov#hadRole: + - '@value': outputs/4 +- '@id': https://localhost/activities/commit/0c305ef9368eeb8ab724200be84acd0fb2602628/steps/step_1/tree/data/covidtracking/states-daily.json + '@type': + - http://www.w3.org/ns/prov#Generation + http://www.w3.org/ns/prov#activity: + - '@id': https://localhost/activities/commit/0c305ef9368eeb8ab724200be84acd0fb2602628 +- '@id': https://localhost/activities/commit/0c305ef9368eeb8ab724200be84acd0fb2602628/steps/step_1/tree/data/covidtracking/states-metadata.json + '@type': + - http://www.w3.org/ns/prov#Generation + http://www.w3.org/ns/prov#activity: + - '@id': https://localhost/activities/commit/0c305ef9368eeb8ab724200be84acd0fb2602628 +- '@id': https://renkulab.io/blob/0c305ef9368eeb8ab724200be84acd0fb2602628/data/covidtracking + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Collection + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': data/covidtracking@0c305ef9368eeb8ab724200be84acd0fb2602628 + http://www.w3.org/ns/prov#atLocation: + - '@value': data/covidtracking + http://www.w3.org/ns/prov#hadMember: + - '@id': https://renkulab.io/blob/0c305ef9368eeb8ab724200be84acd0fb2602628/data/covidtracking/states-daily.json + - '@id': https://renkulab.io/blob/0c305ef9368eeb8ab724200be84acd0fb2602628/data/covidtracking/states-metadata.json + http://www.w3.org/ns/prov#qualifiedGeneration: + - '@id': https://localhost/activities/commit/0c305ef9368eeb8ab724200be84acd0fb2602628/steps/step_1/outputs/2 +- '@id': https://renkulab.io/blob/0c305ef9368eeb8ab724200be84acd0fb2602628/data/covidtracking/states-daily.json + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': data/covidtracking/states-daily.json@0c305ef9368eeb8ab724200be84acd0fb2602628 + http://www.w3.org/ns/prov#atLocation: + - '@value': data/covidtracking/states-daily.json + http://www.w3.org/ns/prov#qualifiedGeneration: + - '@id': https://localhost/activities/commit/0c305ef9368eeb8ab724200be84acd0fb2602628/steps/step_1/tree/data/covidtracking/states-daily.json +- '@id': https://renkulab.io/blob/0c305ef9368eeb8ab724200be84acd0fb2602628/data/covidtracking/states-metadata.json + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': data/covidtracking/states-metadata.json@0c305ef9368eeb8ab724200be84acd0fb2602628 + http://www.w3.org/ns/prov#atLocation: + - '@value': data/covidtracking/states-metadata.json + http://www.w3.org/ns/prov#qualifiedGeneration: + - '@id': https://localhost/activities/commit/0c305ef9368eeb8ab724200be84acd0fb2602628/steps/step_1/tree/data/covidtracking/states-metadata.json +- '@id': https://renkulab.io/blob/0c305ef9368eeb8ab724200be84acd0fb2602628/runs/download-covidtracking-data.runs.ipynb + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': runs/download-covidtracking-data.runs.ipynb@0c305ef9368eeb8ab724200be84acd0fb2602628 + http://www.w3.org/ns/prov#atLocation: + - '@value': runs/download-covidtracking-data.runs.ipynb + http://www.w3.org/ns/prov#qualifiedGeneration: + - '@id': https://localhost/activities/commit/0c305ef9368eeb8ab724200be84acd0fb2602628/steps/step_1/outputs/4 +- '@id': https://renkulab.io/blob/ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658/data/covidtracking + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Collection + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': data/covidtracking@ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658 + http://www.w3.org/ns/prov#atLocation: + - '@value': data/covidtracking + http://www.w3.org/ns/prov#hadMember: + - '@id': https://renkulab.io/blob/ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658/data/covidtracking/states-daily.json + - '@id': https://renkulab.io/blob/ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658/data/covidtracking/states-metadata.json +- '@id': https://renkulab.io/blob/ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658/data/covidtracking/states-daily.json + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - 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