From 62b09da641c3b143e00f70a7a7c53716b7524303 Mon Sep 17 00:00:00 2001
From: Andreas Bleuler <andreas.bleuler@sdsc.ethz.ch>
Date: Tue, 22 Sep 2020 23:12:09 +0000
Subject: [PATCH] Auto-saving for ableuler on branch 000-fix-ecdc-conversion
from commit b87442e
---
notebooks/covid-19-us-nyt.ipynb | 189 +++++++++++++++++++++++++++++---
1 file changed, 176 insertions(+), 13 deletions(-)
diff --git a/notebooks/covid-19-us-nyt.ipynb b/notebooks/covid-19-us-nyt.ipynb
index d5f457218..ed699ac47 100644
--- a/notebooks/covid-19-us-nyt.ipynb
+++ b/notebooks/covid-19-us-nyt.ipynb
@@ -11,7 +11,7 @@
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+ "execution_count": 1,
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@@ -21,7 +21,7 @@
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- "execution_count": null,
+ "execution_count": 2,
"metadata": {},
"outputs": [],
"source": [
@@ -36,7 +36,7 @@
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- "execution_count": null,
+ "execution_count": 3,
"metadata": {},
"outputs": [],
"source": [
@@ -52,7 +52,7 @@
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- "execution_count": null,
+ "execution_count": 4,
"metadata": {
"tags": [
"parameters"
@@ -67,7 +67,7 @@
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- "execution_count": null,
+ "execution_count": 5,
"metadata": {},
"outputs": [],
"source": [
@@ -87,7 +87,7 @@
},
{
"cell_type": "code",
- "execution_count": null,
+ "execution_count": 6,
"metadata": {},
"outputs": [],
"source": [
@@ -98,7 +98,7 @@
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{
"cell_type": "code",
- "execution_count": null,
+ "execution_count": 7,
"metadata": {},
"outputs": [],
"source": [
@@ -111,7 +111,7 @@
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{
"cell_type": "code",
- "execution_count": null,
+ "execution_count": 8,
"metadata": {},
"outputs": [],
"source": [
@@ -123,9 +123,87 @@
},
{
"cell_type": "code",
- "execution_count": null,
+ "execution_count": 9,
"metadata": {},
- "outputs": [],
+ "outputs": [
+ {
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+ "</script>"
+ ],
+ "text/plain": [
+ "alt.HConcatChart(...)"
+ ]
+ },
+ "metadata": {},
+ "output_type": "display_data"
+ },
+ {
+ "data": {
+ "text/html": [
+ "\n",
+ "<p style=\"font-size: smaller\">Data Sources: \n",
+ " <a href=\"https://github.com/nytimes/covid-19-data\">New York Times</a>, <a href=\"https://www.census.gov/\">U.S. Census</a>,\n",
+ " <a href=\"https://github.com/pcm-dpc/COVID-19\">Italian Civil Protection</a>, <a href=\"https://wikidata.org\">Wikidata</a> \n",
+ "<br>\n",
+ "Analysis and Visualization:\n",
+ " <a href=\"https://renkulab.io/projects/covid-19/covid-19-public-data\">Covid-19 Public Data Collaboration Project @ renkulab.io</a>\n",
+ "</p>"
+ ],
+ "text/plain": [
+ "<IPython.core.display.HTML object>"
+ ]
+ },
+ "metadata": {},
+ "output_type": "display_data"
+ }
+ ],
"source": [
"base = alt.Chart(top10_df)\n",
"\n",
@@ -170,7 +248,7 @@
},
{
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- "execution_count": null,
+ "execution_count": 10,
"metadata": {},
"outputs": [],
"source": [
@@ -179,9 +257,87 @@
},
{
"cell_type": "code",
- "execution_count": null,
+ "execution_count": 11,
"metadata": {},
- "outputs": [],
+ "outputs": [
+ {
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+ "text/html": [
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+ " function displayChart(vegaEmbed) {\n",
+ " vegaEmbed(outputDiv, spec, embedOpt)\n",
+ " .catch(err => showError(`Javascript Error: ${err.message}<br>This usually means there's a typo in your chart specification. See the javascript console for the full traceback.`));\n",
+ " }\n",
+ "\n",
+ " if(typeof define === \"function\" && define.amd) {\n",
+ " requirejs.config({paths});\n",
+ " require([\"vega-embed\"], displayChart, err => showError(`Error loading script: ${err.message}`));\n",
+ " } else if (typeof vegaEmbed === \"function\") {\n",
+ " displayChart(vegaEmbed);\n",
+ " } else {\n",
+ " loadScript(\"vega\")\n",
+ " .then(() => loadScript(\"vega-lite\"))\n",
+ " .then(() => loadScript(\"vega-embed\"))\n",
+ " .catch(showError)\n",
+ " .then(() => displayChart(vegaEmbed));\n",
+ " }\n",
+ " })({\"config\": {\"view\": {\"continuousWidth\": 400, \"continuousHeight\": 300}}, \"hconcat\": [{\"layer\": [{\"data\": {\"name\": \"data-3d23337f1553931cc03bf392b520222c\"}, \"mark\": \"line\", \"encoding\": {\"color\": {\"type\": \"nominal\", \"field\": \"county_state\", \"legend\": {\"title\": \"County\"}}, \"opacity\": {\"condition\": {\"value\": 1, \"selection\": \"selector003\"}, \"value\": 0.2}, \"tooltip\": [{\"type\": \"nominal\", \"field\": \"county_state\", \"title\": \"County\"}, {\"type\": \"quantitative\", \"field\": \"deceased\", \"title\": \"Total deaths\"}, {\"type\": \"temporal\", \"field\": \"date\", \"title\": \"Date\"}], \"x\": {\"type\": \"quantitative\", \"axis\": {\"title\": \"Days since 10th death\"}, \"field\": \"sinceDay0\"}, \"y\": {\"type\": \"quantitative\", \"axis\": {\"title\": \"Total deaths\"}, \"field\": \"deceased\", \"scale\": {\"type\": \"log\"}}}, \"height\": 400, \"selection\": {\"selector003\": {\"type\": \"multi\", \"fields\": [\"county_state\"], \"bind\": \"legend\"}}, \"width\": 600}, {\"layer\": [{\"data\": {\"name\": \"data-02f490927219e918d098f12d36dde759\"}, \"mark\": {\"type\": \"line\", \"clip\": true, \"opacity\": 0.2}, \"encoding\": {\"color\": {\"type\": \"nominal\", \"field\": \"doubling period\"}, \"x\": {\"type\": \"quantitative\", \"field\": \"day\", \"scale\": {\"domain\": [1, 45]}}, \"y\": {\"type\": \"quantitative\", \"field\": \"case\", \"scale\": {\"domain\": [10, 50000]}}}}, {\"data\": {\"name\": \"data-e7d73625036c4936262b95431995cba4\"}, \"mark\": {\"type\": \"text\", \"align\": \"right\", \"baseline\": \"bottom\", \"dx\": 0, \"opacity\": 0.5, \"size\": 15}, \"encoding\": {\"text\": {\"type\": \"nominal\", \"field\": \"labelText\"}, \"x\": {\"type\": \"quantitative\", \"field\": \"labelX\"}, \"y\": {\"type\": \"quantitative\", \"field\": \"labelY\"}}}]}]}], \"title\": \"Deaths in top 10 most affected U.S. counties\", \"$schema\": \"https://vega.github.io/schema/vega-lite/v4.0.2.json\", 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+ "</script>"
+ ],
+ "text/plain": [
+ "alt.HConcatChart(...)"
+ ]
+ },
+ "metadata": {},
+ "output_type": "display_data"
+ },
+ {
+ "data": {
+ "text/html": [
+ "\n",
+ "<p style=\"font-size: smaller\">Data Sources: \n",
+ " <a href=\"https://github.com/nytimes/covid-19-data\">New York Times</a>, <a href=\"https://www.census.gov/\">U.S. Census</a>,\n",
+ " <a href=\"https://github.com/pcm-dpc/COVID-19\">Italian Civil Protection</a>, <a href=\"https://wikidata.org\">Wikidata</a> \n",
+ "<br>\n",
+ "Analysis and Visualization:\n",
+ " <a href=\"https://renkulab.io/projects/covid-19/covid-19-public-data\">Covid-19 Public Data Collaboration Project @ renkulab.io</a>\n",
+ "</p>"
+ ],
+ "text/plain": [
+ "<IPython.core.display.HTML object>"
+ ]
+ },
+ "metadata": {},
+ "output_type": "display_data"
+ }
+ ],
"source": [
"chart = plotting.make_region_since_chart(\n",
" alt.Chart(since_df), \n",
@@ -209,6 +365,13 @@
"display(html_credits)"
]
},
+ {
+ "cell_type": "code",
+ "execution_count": null,
+ "metadata": {},
+ "outputs": [],
+ "source": []
+ },
{
"cell_type": "code",
"execution_count": null,
--
GitLab