diff --git a/.renku/activity_index.yaml b/.renku/activity_index.yaml index 6060494e0fb0e9cfdba39f5d1c8e9b4dcf541d4e..b086f40b497105b764bd4c9b8f1c27a76e74e2a6 100644 --- a/.renku/activity_index.yaml +++ b/.renku/activity_index.yaml @@ -205,6 +205,8 @@ data/covidtracking: - .renku/workflow/e0e07622ba9e477f9dd8197481b64533_migrated.yaml 50366b9b64638d1b345340e6d5db85e4126b45ce: - .renku/workflow/f64608d09da74e42a1dd9b7cd0eb6216_migrated.yaml + 505b9cb17cc227b14d7598662431baaa8c608fdd: + - .renku/workflow/7e73b72b4fcb4de4ae975d9dadbb458c_migrated.yaml 52ea018dc7961c7aaf7e8d78cbe15577170611ac: - .renku/workflow/854f5444f6f04791b1d9dedb2b5dc157_migrated.yaml 534c218bcb0faa185b38641198f8f6006b6026b7: @@ -561,6 +563,8 @@ data/covidtracking/states-daily.json: - .renku/workflow/e0e07622ba9e477f9dd8197481b64533_migrated.yaml 50366b9b64638d1b345340e6d5db85e4126b45ce: - .renku/workflow/f64608d09da74e42a1dd9b7cd0eb6216_migrated.yaml + 505b9cb17cc227b14d7598662431baaa8c608fdd: + - .renku/workflow/7e73b72b4fcb4de4ae975d9dadbb458c_migrated.yaml 52ea018dc7961c7aaf7e8d78cbe15577170611ac: - .renku/workflow/854f5444f6f04791b1d9dedb2b5dc157_migrated.yaml 534c218bcb0faa185b38641198f8f6006b6026b7: @@ -910,6 +914,8 @@ data/covidtracking/states-metadata.json: - .renku/workflow/e0e07622ba9e477f9dd8197481b64533_migrated.yaml 50366b9b64638d1b345340e6d5db85e4126b45ce: - .renku/workflow/f64608d09da74e42a1dd9b7cd0eb6216_migrated.yaml + 505b9cb17cc227b14d7598662431baaa8c608fdd: + - .renku/workflow/7e73b72b4fcb4de4ae975d9dadbb458c_migrated.yaml 52ea018dc7961c7aaf7e8d78cbe15577170611ac: - .renku/workflow/854f5444f6f04791b1d9dedb2b5dc157_migrated.yaml 534c218bcb0faa185b38641198f8f6006b6026b7: @@ -2136,6 +2142,8 @@ runs/download-covidtracking-data.runs.ipynb: - .renku/workflow/e0e07622ba9e477f9dd8197481b64533_migrated.yaml 50366b9b64638d1b345340e6d5db85e4126b45ce: - .renku/workflow/f64608d09da74e42a1dd9b7cd0eb6216_migrated.yaml + 505b9cb17cc227b14d7598662431baaa8c608fdd: + - .renku/workflow/7e73b72b4fcb4de4ae975d9dadbb458c_migrated.yaml 52ea018dc7961c7aaf7e8d78cbe15577170611ac: - .renku/workflow/854f5444f6f04791b1d9dedb2b5dc157_migrated.yaml 534c218bcb0faa185b38641198f8f6006b6026b7: diff --git a/.renku/workflow/0868b6aae8424befa03924a846b7bb64.cwl b/.renku/workflow/0868b6aae8424befa03924a846b7bb64.cwl deleted file mode 100644 index 8905f313689d7674c0fdc3cb30d7a678a7aee76a..0000000000000000000000000000000000000000 --- a/.renku/workflow/0868b6aae8424befa03924a846b7bb64.cwl +++ /dev/null @@ -1,120 +0,0 @@ -class: Workflow -cwlVersion: v1.0 -hints: [] -inputs: - input_1: - default: out_folder - streamable: false - type: string - input_2: - default: data/covidtracking - streamable: false - type: string - input_3: - default: - class: File - path: ../../notebooks/process/download-covidtracking-data.ipynb - streamable: false - type: File - input_4: - default: runs/download-covidtracking-data.runs.ipynb - streamable: false - type: string - input_5: - default: states-metadata.json - streamable: false - type: string - input_6: - default: states-daily.json - streamable: false - type: string -outputs: - output_1: - outputSource: step_1/output_0 - streamable: false - type: File - output_3: - outputSource: step_1/output_1 - streamable: false - type: Directory -requirements: [] -steps: - step_1: - in: - input_1: input_1 - input_2: input_2 - input_3: input_3 - input_4: input_4 - out: - - output_1 - - output_0 - run: a17d560c41a54f5aa307ce5f3c5effe5_papermill.cwl - step_2: - in: - filename: input_5 - input_directory: step_1/output_1 - out: - - output_file - run: - arguments: [] - baseCommand: - - 'true' - class: CommandLineTool - cwlVersion: v1.0 - hints: [] - inputs: - filename: - default: states-metadata.json - streamable: false - type: string - input_directory: - streamable: false - type: Directory - outputs: - output_file: - outputBinding: - glob: $(inputs.filename) - streamable: false - type: File - permanentFailCodes: [] - requirements: - - &id001 - class: InlineJavascriptRequirement - - &id002 - class: InitialWorkDirRequirement - listing: $(inputs.input_directory.listing) - successCodes: [] - temporaryFailCodes: [] - step_3: - in: - filename: input_6 - input_directory: step_1/output_1 - out: - - output_file - run: - arguments: [] - baseCommand: - - 'true' - class: CommandLineTool - cwlVersion: v1.0 - hints: [] - inputs: - filename: - default: states-daily.json - streamable: false - type: string - input_directory: - streamable: false - type: Directory - outputs: - output_file: - outputBinding: - glob: $(inputs.filename) - streamable: false - type: File - permanentFailCodes: [] - requirements: - - *id001 - - *id002 - successCodes: [] - temporaryFailCodes: [] diff --git a/.renku/workflow/7e73b72b4fcb4de4ae975d9dadbb458c_migrated.yaml b/.renku/workflow/7e73b72b4fcb4de4ae975d9dadbb458c_migrated.yaml new file mode 100644 index 0000000000000000000000000000000000000000..4872621b00fa31066ce09563e78f82eb4f0111c9 --- /dev/null +++ b/.renku/workflow/7e73b72b4fcb4de4ae975d9dadbb458c_migrated.yaml @@ -0,0 +1,434 @@ +- '@id': https://github.com/swissdatasciencecenter/renku-python/tree/v0.10.4 + '@type': + - http://purl.org/wf4ever/wfprov#WorkflowEngine + - http://www.w3.org/ns/prov#SoftwareAgent + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': renku 0.10.4 +- '@id': https://github.com/swissdatasciencecenter/renku-python/tree/v0.15.1 + '@type': + - http://purl.org/wf4ever/wfprov#WorkflowEngine + - http://www.w3.org/ns/prov#SoftwareAgent + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': renku 0.15.1 +- '@id': https://localhost/activities/commit/505b9cb17cc227b14d7598662431baaa8c608fdd + '@type': + - http://purl.org/wf4ever/wfprov#ProcessRun + - http://purl.org/wf4ever/wfprov#WorkflowRun + - http://www.w3.org/ns/prov#Activity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#comment: + - '@value': renku rerun data/covidtracking/states-metadata.json data/covidtracking/states-daily.json + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': .renku/workflow/7e73b72b4fcb4de4ae975d9dadbb458c_migrated.yaml@505b9cb17cc227b14d7598662431baaa8c608fdd + http://www.w3.org/ns/prov#atLocation: + - '@value': .renku/workflow/7e73b72b4fcb4de4ae975d9dadbb458c_migrated.yaml + http://www.w3.org/ns/prov#endedAtTime: + - '@type': http://www.w3.org/2001/XMLSchema#dateTime + '@value': '2020-09-27T07:36:54+00:00' + http://www.w3.org/ns/prov#influenced: [] + http://www.w3.org/ns/prov#qualifiedAssociation: + - '@id': https://localhost/activities/commit/505b9cb17cc227b14d7598662431baaa8c608fdd/association + http://www.w3.org/ns/prov#qualifiedUsage: + - '@id': https://localhost/activities/commit/505b9cb17cc227b14d7598662431baaa8c608fdd/inputs/1 + http://www.w3.org/ns/prov#startedAtTime: + - '@type': http://www.w3.org/2001/XMLSchema#dateTime + '@value': '2020-09-27T07:36:54+00:00' + http://www.w3.org/ns/prov#wasAssociatedWith: + - '@id': mailto:beepbop@example.com + - '@id': https://github.com/swissdatasciencecenter/renku-python/tree/v0.15.1 + http://www.w3.org/ns/prov#wasInformedBy: + - '@id': https://localhost/activities/commit/81fe448465478c020b0c90457ee63b7a3dd5a9db +- '@id': https://localhost/activities/commit/505b9cb17cc227b14d7598662431baaa8c608fdd/association + '@type': + - http://www.w3.org/ns/prov#Association + http://www.w3.org/ns/prov#agent: + - '@id': https://github.com/swissdatasciencecenter/renku-python/tree/v0.10.4 + http://www.w3.org/ns/prov#hadPlan: + - '@id': https://renkulab.io/runs/372e99b5ec3a459ffb5cfb9879e9df809705b2f2 +- '@id': https://localhost/activities/commit/505b9cb17cc227b14d7598662431baaa8c608fdd/inputs/1 + '@type': + - http://www.w3.org/ns/prov#Usage + http://www.w3.org/ns/prov#entity: + - '@id': https://renkulab.io/blob/d754df040a4bf8f7cb7ae6ed4151830f9bb0f520/notebooks/process/download-covidtracking-data.ipynb + http://www.w3.org/ns/prov#hadRole: + - '@value': steps/step_1/inputs/3 +- '@id': https://localhost/activities/commit/505b9cb17cc227b14d7598662431baaa8c608fdd/steps/step_1 + '@type': + - http://purl.org/wf4ever/wfprov#ProcessRun + - http://www.w3.org/ns/prov#Activity + http://purl.org/wf4ever/wfprov#wasPartOfWorkflowRun: + - '@id': https://localhost/activities/commit/505b9cb17cc227b14d7598662431baaa8c608fdd + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#comment: + - '@value': renku rerun data/covidtracking/states-metadata.json data/covidtracking/states-daily.json + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': .renku/workflow/7e73b72b4fcb4de4ae975d9dadbb458c_migrated.yaml@505b9cb17cc227b14d7598662431baaa8c608fdd + http://www.w3.org/ns/prov#atLocation: + - '@value': .renku/workflow/7e73b72b4fcb4de4ae975d9dadbb458c_migrated.yaml + http://www.w3.org/ns/prov#endedAtTime: + - '@type': http://www.w3.org/2001/XMLSchema#dateTime + '@value': '2020-09-27T07:36:54+00:00' + http://www.w3.org/ns/prov#influenced: [] + http://www.w3.org/ns/prov#qualifiedAssociation: + - '@id': https://localhost/activities/commit/505b9cb17cc227b14d7598662431baaa8c608fdd/steps/step_1/association + http://www.w3.org/ns/prov#qualifiedUsage: + - '@id': https://localhost/activities/commit/505b9cb17cc227b14d7598662431baaa8c608fdd/steps/step_1/inputs/3 + http://www.w3.org/ns/prov#startedAtTime: + - '@type': http://www.w3.org/2001/XMLSchema#dateTime + '@value': '2020-09-27T07:36:54+00:00' + http://www.w3.org/ns/prov#wasAssociatedWith: + - '@id': mailto:beepbop@example.com + - '@id': https://github.com/swissdatasciencecenter/renku-python/tree/v0.15.1 + http://www.w3.org/ns/prov#wasInformedBy: + - '@id': https://localhost/activities/commit/81fe448465478c020b0c90457ee63b7a3dd5a9db + https://swissdatasciencecenter.github.io/renku-ontology#hasRunParameter: [] +- '@id': https://localhost/activities/commit/505b9cb17cc227b14d7598662431baaa8c608fdd/steps/step_1/association + '@type': + - http://www.w3.org/ns/prov#Association + http://www.w3.org/ns/prov#agent: + - '@id': https://github.com/swissdatasciencecenter/renku-python/tree/v0.10.4 + http://www.w3.org/ns/prov#hadPlan: + - '@id': https://renkulab.io/runs/8ef9a36d687d9fde7337bd8ed922883c2bcc420d +- '@id': https://localhost/activities/commit/505b9cb17cc227b14d7598662431baaa8c608fdd/steps/step_1/inputs/3 + '@type': + - http://www.w3.org/ns/prov#Usage + http://www.w3.org/ns/prov#entity: + - '@id': https://renkulab.io/blob/d754df040a4bf8f7cb7ae6ed4151830f9bb0f520/notebooks/process/download-covidtracking-data.ipynb + http://www.w3.org/ns/prov#hadRole: + - '@value': inputs/3 +- '@id': https://localhost/activities/commit/505b9cb17cc227b14d7598662431baaa8c608fdd/steps/step_1/outputs/2 + '@type': + - http://www.w3.org/ns/prov#Generation + http://www.w3.org/ns/prov#activity: + - '@id': https://localhost/activities/commit/505b9cb17cc227b14d7598662431baaa8c608fdd/steps/step_1 + - '@id': https://localhost/activities/commit/505b9cb17cc227b14d7598662431baaa8c608fdd + http://www.w3.org/ns/prov#hadRole: + - '@value': outputs/2 +- '@id': https://localhost/activities/commit/505b9cb17cc227b14d7598662431baaa8c608fdd/steps/step_1/outputs/4 + '@type': + - http://www.w3.org/ns/prov#Generation + http://www.w3.org/ns/prov#activity: + - '@id': https://localhost/activities/commit/505b9cb17cc227b14d7598662431baaa8c608fdd/steps/step_1 + - '@id': https://localhost/activities/commit/505b9cb17cc227b14d7598662431baaa8c608fdd + http://www.w3.org/ns/prov#hadRole: + - '@value': outputs/4 +- '@id': https://localhost/activities/commit/505b9cb17cc227b14d7598662431baaa8c608fdd/steps/step_1/tree/data/covidtracking/states-daily.json + '@type': + - http://www.w3.org/ns/prov#Generation + http://www.w3.org/ns/prov#activity: + - '@id': https://localhost/activities/commit/505b9cb17cc227b14d7598662431baaa8c608fdd +- '@id': https://localhost/activities/commit/505b9cb17cc227b14d7598662431baaa8c608fdd/steps/step_1/tree/data/covidtracking/states-metadata.json + '@type': + - http://www.w3.org/ns/prov#Generation + http://www.w3.org/ns/prov#activity: + - '@id': https://localhost/activities/commit/505b9cb17cc227b14d7598662431baaa8c608fdd +- '@id': https://renkulab.io/blob/505b9cb17cc227b14d7598662431baaa8c608fdd/data/covidtracking + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Collection + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': data/covidtracking@505b9cb17cc227b14d7598662431baaa8c608fdd + http://www.w3.org/ns/prov#atLocation: + - '@value': data/covidtracking + http://www.w3.org/ns/prov#hadMember: + - '@id': https://renkulab.io/blob/505b9cb17cc227b14d7598662431baaa8c608fdd/data/covidtracking/states-daily.json + - '@id': https://renkulab.io/blob/505b9cb17cc227b14d7598662431baaa8c608fdd/data/covidtracking/states-metadata.json + http://www.w3.org/ns/prov#qualifiedGeneration: + - '@id': https://localhost/activities/commit/505b9cb17cc227b14d7598662431baaa8c608fdd/steps/step_1/outputs/2 +- '@id': https://renkulab.io/blob/505b9cb17cc227b14d7598662431baaa8c608fdd/data/covidtracking/states-daily.json + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': data/covidtracking/states-daily.json@505b9cb17cc227b14d7598662431baaa8c608fdd + http://www.w3.org/ns/prov#atLocation: + - '@value': data/covidtracking/states-daily.json + http://www.w3.org/ns/prov#qualifiedGeneration: + - '@id': https://localhost/activities/commit/505b9cb17cc227b14d7598662431baaa8c608fdd/steps/step_1/tree/data/covidtracking/states-daily.json +- '@id': https://renkulab.io/blob/505b9cb17cc227b14d7598662431baaa8c608fdd/data/covidtracking/states-metadata.json + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': data/covidtracking/states-metadata.json@505b9cb17cc227b14d7598662431baaa8c608fdd + http://www.w3.org/ns/prov#atLocation: + - '@value': data/covidtracking/states-metadata.json + http://www.w3.org/ns/prov#qualifiedGeneration: + - '@id': https://localhost/activities/commit/505b9cb17cc227b14d7598662431baaa8c608fdd/steps/step_1/tree/data/covidtracking/states-metadata.json +- '@id': https://renkulab.io/blob/505b9cb17cc227b14d7598662431baaa8c608fdd/runs/download-covidtracking-data.runs.ipynb + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': runs/download-covidtracking-data.runs.ipynb@505b9cb17cc227b14d7598662431baaa8c608fdd + http://www.w3.org/ns/prov#atLocation: + - '@value': runs/download-covidtracking-data.runs.ipynb + http://www.w3.org/ns/prov#qualifiedGeneration: + - '@id': https://localhost/activities/commit/505b9cb17cc227b14d7598662431baaa8c608fdd/steps/step_1/outputs/4 +- '@id': https://renkulab.io/blob/ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658/data/covidtracking + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Collection + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': data/covidtracking@ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658 + http://www.w3.org/ns/prov#atLocation: + - '@value': data/covidtracking + http://www.w3.org/ns/prov#hadMember: + - '@id': https://renkulab.io/blob/ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658/data/covidtracking/states-daily.json + - '@id': https://renkulab.io/blob/ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658/data/covidtracking/states-metadata.json +- '@id': https://renkulab.io/blob/ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658/data/covidtracking/states-daily.json + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - 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