diff --git a/.renku/activity_index.yaml b/.renku/activity_index.yaml index 96bd7397e75f55d690da9be014d86b447772ae63..5b559ba4d73ce5e239576ee5978fe574151e99c8 100644 --- a/.renku/activity_index.yaml +++ b/.renku/activity_index.yaml @@ -249,6 +249,8 @@ data/covidtracking: - .renku/workflow/590c9b4ac2dc4118b78d9a3c7357a812_migrated.yaml 611732d5b9d563cd3e9c10ad7683815d040e2874: - .renku/workflow/11c29bf1504b480d9b6f2181e9df4099_migrated.yaml + 6202a506798dd9bb3c296dbfb4ff0e0a70f30f24: + - .renku/workflow/a63d8ec3bd384f45b40d100c558a80e9_migrated.yaml 6266504a51424008921a971022c5b67c6069e1f8: - .renku/workflow/92400ef979f6492db8db801a81b72728_migrated.yaml 63ad4c94d0995952ad2587cdb44d2c7ff836ab25: @@ -645,6 +647,8 @@ data/covidtracking/states-daily.json: - .renku/workflow/590c9b4ac2dc4118b78d9a3c7357a812_migrated.yaml 611732d5b9d563cd3e9c10ad7683815d040e2874: - .renku/workflow/11c29bf1504b480d9b6f2181e9df4099_migrated.yaml + 6202a506798dd9bb3c296dbfb4ff0e0a70f30f24: + - .renku/workflow/a63d8ec3bd384f45b40d100c558a80e9_migrated.yaml 6266504a51424008921a971022c5b67c6069e1f8: - .renku/workflow/92400ef979f6492db8db801a81b72728_migrated.yaml 63ad4c94d0995952ad2587cdb44d2c7ff836ab25: @@ -1032,6 +1036,8 @@ data/covidtracking/states-metadata.json: - .renku/workflow/590c9b4ac2dc4118b78d9a3c7357a812_migrated.yaml 611732d5b9d563cd3e9c10ad7683815d040e2874: - .renku/workflow/11c29bf1504b480d9b6f2181e9df4099_migrated.yaml + 6202a506798dd9bb3c296dbfb4ff0e0a70f30f24: + - .renku/workflow/a63d8ec3bd384f45b40d100c558a80e9_migrated.yaml 6266504a51424008921a971022c5b67c6069e1f8: - .renku/workflow/92400ef979f6492db8db801a81b72728_migrated.yaml 63ad4c94d0995952ad2587cdb44d2c7ff836ab25: @@ -2366,6 +2372,8 @@ runs/download-covidtracking-data.runs.ipynb: - .renku/workflow/590c9b4ac2dc4118b78d9a3c7357a812_migrated.yaml 611732d5b9d563cd3e9c10ad7683815d040e2874: - .renku/workflow/11c29bf1504b480d9b6f2181e9df4099_migrated.yaml + 6202a506798dd9bb3c296dbfb4ff0e0a70f30f24: + - .renku/workflow/a63d8ec3bd384f45b40d100c558a80e9_migrated.yaml 6266504a51424008921a971022c5b67c6069e1f8: - .renku/workflow/92400ef979f6492db8db801a81b72728_migrated.yaml 63ad4c94d0995952ad2587cdb44d2c7ff836ab25: diff --git a/.renku/workflow/79ba694b435f4f70bbaff9062a54efab.cwl b/.renku/workflow/79ba694b435f4f70bbaff9062a54efab.cwl deleted file mode 100644 index 9e05bcc7dee93e4b72bf898cff064da4fd2175eb..0000000000000000000000000000000000000000 --- a/.renku/workflow/79ba694b435f4f70bbaff9062a54efab.cwl +++ /dev/null @@ -1,120 +0,0 @@ -class: Workflow -cwlVersion: v1.0 -hints: [] -inputs: - input_1: - default: states-metadata.json - streamable: false - type: string - input_2: - default: states-daily.json - streamable: false - type: string - input_3: - default: out_folder - streamable: false - type: string - input_4: - default: data/covidtracking - streamable: false - type: string - input_5: - default: - class: File - path: ../../notebooks/process/download-covidtracking-data.ipynb - streamable: false - type: File - input_6: - default: runs/download-covidtracking-data.runs.ipynb - streamable: false - type: string -outputs: - output_2: - outputSource: step_3/output_0 - streamable: false - type: File - output_3: - outputSource: step_3/output_1 - streamable: false - type: Directory -requirements: [] -steps: - step_1: - in: - filename: input_1 - input_directory: step_3/output_1 - out: - - output_file - run: - arguments: [] - baseCommand: - - 'true' - class: CommandLineTool - cwlVersion: v1.0 - hints: [] - inputs: - filename: - default: states-metadata.json - streamable: false - type: string - input_directory: - streamable: false - type: Directory - outputs: - output_file: - outputBinding: - glob: $(inputs.filename) - streamable: false - type: File - permanentFailCodes: [] - requirements: - - &id001 - class: InlineJavascriptRequirement - - &id002 - class: InitialWorkDirRequirement - listing: $(inputs.input_directory.listing) - successCodes: [] - temporaryFailCodes: [] - step_2: - in: - filename: input_2 - input_directory: step_3/output_1 - out: - - output_file - run: - arguments: [] - baseCommand: - - 'true' - class: CommandLineTool - cwlVersion: v1.0 - hints: [] - inputs: - filename: - default: states-daily.json - streamable: false - type: string - input_directory: - streamable: false - type: Directory - outputs: - output_file: - outputBinding: - glob: $(inputs.filename) - streamable: false - type: File - permanentFailCodes: [] - requirements: - - *id001 - - *id002 - successCodes: [] - temporaryFailCodes: [] - step_3: - in: - input_1: input_3 - input_2: input_4 - input_3: input_5 - input_4: input_6 - out: - - output_1 - - output_0 - run: a17d560c41a54f5aa307ce5f3c5effe5_papermill.cwl diff --git a/.renku/workflow/a63d8ec3bd384f45b40d100c558a80e9_migrated.yaml b/.renku/workflow/a63d8ec3bd384f45b40d100c558a80e9_migrated.yaml new file mode 100644 index 0000000000000000000000000000000000000000..79def1ae3862608695e4b3dc01df5e0d9ceb9f30 --- /dev/null +++ b/.renku/workflow/a63d8ec3bd384f45b40d100c558a80e9_migrated.yaml @@ -0,0 +1,434 @@ +- '@id': https://github.com/swissdatasciencecenter/renku-python/tree/v0.10.4 + '@type': + - http://purl.org/wf4ever/wfprov#WorkflowEngine + - http://www.w3.org/ns/prov#SoftwareAgent + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': renku 0.10.4 +- '@id': https://github.com/swissdatasciencecenter/renku-python/tree/v0.15.1 + '@type': + - http://purl.org/wf4ever/wfprov#WorkflowEngine + - http://www.w3.org/ns/prov#SoftwareAgent + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': renku 0.15.1 +- '@id': https://localhost/activities/commit/6202a506798dd9bb3c296dbfb4ff0e0a70f30f24 + '@type': + - http://purl.org/wf4ever/wfprov#ProcessRun + - http://purl.org/wf4ever/wfprov#WorkflowRun + - http://www.w3.org/ns/prov#Activity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#comment: + - '@value': renku rerun data/covidtracking/states-metadata.json data/covidtracking/states-daily.json + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': .renku/workflow/a63d8ec3bd384f45b40d100c558a80e9_migrated.yaml@6202a506798dd9bb3c296dbfb4ff0e0a70f30f24 + http://www.w3.org/ns/prov#atLocation: + - '@value': .renku/workflow/a63d8ec3bd384f45b40d100c558a80e9_migrated.yaml + http://www.w3.org/ns/prov#endedAtTime: + - '@type': http://www.w3.org/2001/XMLSchema#dateTime + '@value': '2020-10-18T07:36:00+00:00' + http://www.w3.org/ns/prov#influenced: [] + http://www.w3.org/ns/prov#qualifiedAssociation: + - '@id': https://localhost/activities/commit/6202a506798dd9bb3c296dbfb4ff0e0a70f30f24/association + http://www.w3.org/ns/prov#qualifiedUsage: + - '@id': https://localhost/activities/commit/6202a506798dd9bb3c296dbfb4ff0e0a70f30f24/inputs/1 + http://www.w3.org/ns/prov#startedAtTime: + - '@type': http://www.w3.org/2001/XMLSchema#dateTime + '@value': '2020-10-18T07:36:00+00:00' + http://www.w3.org/ns/prov#wasAssociatedWith: + - '@id': mailto:beepbop@example.com + - '@id': https://github.com/swissdatasciencecenter/renku-python/tree/v0.15.1 + http://www.w3.org/ns/prov#wasInformedBy: + - '@id': https://localhost/activities/commit/bbe5618cc6d42d9191bf07ad236c303972837a09 +- '@id': https://localhost/activities/commit/6202a506798dd9bb3c296dbfb4ff0e0a70f30f24/association + '@type': + - http://www.w3.org/ns/prov#Association + http://www.w3.org/ns/prov#agent: + - '@id': https://github.com/swissdatasciencecenter/renku-python/tree/v0.10.4 + http://www.w3.org/ns/prov#hadPlan: + - '@id': https://renkulab.io/runs/92bd8a1094978626c2c20a8cbf29f57fbdbc78a3 +- '@id': https://localhost/activities/commit/6202a506798dd9bb3c296dbfb4ff0e0a70f30f24/inputs/1 + '@type': + - http://www.w3.org/ns/prov#Usage + http://www.w3.org/ns/prov#entity: + - '@id': https://renkulab.io/blob/d754df040a4bf8f7cb7ae6ed4151830f9bb0f520/notebooks/process/download-covidtracking-data.ipynb + http://www.w3.org/ns/prov#hadRole: + - '@value': steps/step_1/inputs/3 +- '@id': https://localhost/activities/commit/6202a506798dd9bb3c296dbfb4ff0e0a70f30f24/steps/step_1 + '@type': + - http://purl.org/wf4ever/wfprov#ProcessRun + - http://www.w3.org/ns/prov#Activity + http://purl.org/wf4ever/wfprov#wasPartOfWorkflowRun: + - '@id': https://localhost/activities/commit/6202a506798dd9bb3c296dbfb4ff0e0a70f30f24 + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#comment: + - '@value': renku rerun data/covidtracking/states-metadata.json data/covidtracking/states-daily.json + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': .renku/workflow/a63d8ec3bd384f45b40d100c558a80e9_migrated.yaml@6202a506798dd9bb3c296dbfb4ff0e0a70f30f24 + http://www.w3.org/ns/prov#atLocation: + - '@value': .renku/workflow/a63d8ec3bd384f45b40d100c558a80e9_migrated.yaml + http://www.w3.org/ns/prov#endedAtTime: + - '@type': http://www.w3.org/2001/XMLSchema#dateTime + '@value': '2020-10-18T07:36:00+00:00' + http://www.w3.org/ns/prov#influenced: [] + http://www.w3.org/ns/prov#qualifiedAssociation: + - '@id': https://localhost/activities/commit/6202a506798dd9bb3c296dbfb4ff0e0a70f30f24/steps/step_1/association + http://www.w3.org/ns/prov#qualifiedUsage: + - '@id': https://localhost/activities/commit/6202a506798dd9bb3c296dbfb4ff0e0a70f30f24/steps/step_1/inputs/3 + http://www.w3.org/ns/prov#startedAtTime: + - '@type': http://www.w3.org/2001/XMLSchema#dateTime + '@value': '2020-10-18T07:36:00+00:00' + http://www.w3.org/ns/prov#wasAssociatedWith: + - '@id': mailto:beepbop@example.com + - '@id': https://github.com/swissdatasciencecenter/renku-python/tree/v0.15.1 + http://www.w3.org/ns/prov#wasInformedBy: + - '@id': https://localhost/activities/commit/bbe5618cc6d42d9191bf07ad236c303972837a09 + https://swissdatasciencecenter.github.io/renku-ontology#hasRunParameter: [] +- '@id': https://localhost/activities/commit/6202a506798dd9bb3c296dbfb4ff0e0a70f30f24/steps/step_1/association + '@type': + - http://www.w3.org/ns/prov#Association + http://www.w3.org/ns/prov#agent: + - '@id': https://github.com/swissdatasciencecenter/renku-python/tree/v0.10.4 + http://www.w3.org/ns/prov#hadPlan: + - '@id': https://renkulab.io/runs/06044c0ec034bef4ea7c365fe73843bd54b29a36 +- '@id': https://localhost/activities/commit/6202a506798dd9bb3c296dbfb4ff0e0a70f30f24/steps/step_1/inputs/3 + '@type': + - http://www.w3.org/ns/prov#Usage + http://www.w3.org/ns/prov#entity: + - '@id': https://renkulab.io/blob/d754df040a4bf8f7cb7ae6ed4151830f9bb0f520/notebooks/process/download-covidtracking-data.ipynb + http://www.w3.org/ns/prov#hadRole: + - '@value': inputs/3 +- '@id': https://localhost/activities/commit/6202a506798dd9bb3c296dbfb4ff0e0a70f30f24/steps/step_1/outputs/2 + '@type': + - http://www.w3.org/ns/prov#Generation + http://www.w3.org/ns/prov#activity: + - '@id': https://localhost/activities/commit/6202a506798dd9bb3c296dbfb4ff0e0a70f30f24/steps/step_1 + - '@id': https://localhost/activities/commit/6202a506798dd9bb3c296dbfb4ff0e0a70f30f24 + http://www.w3.org/ns/prov#hadRole: + - '@value': outputs/2 +- '@id': https://localhost/activities/commit/6202a506798dd9bb3c296dbfb4ff0e0a70f30f24/steps/step_1/outputs/4 + '@type': + - http://www.w3.org/ns/prov#Generation + http://www.w3.org/ns/prov#activity: + - '@id': https://localhost/activities/commit/6202a506798dd9bb3c296dbfb4ff0e0a70f30f24/steps/step_1 + - '@id': https://localhost/activities/commit/6202a506798dd9bb3c296dbfb4ff0e0a70f30f24 + http://www.w3.org/ns/prov#hadRole: + - '@value': outputs/4 +- '@id': https://localhost/activities/commit/6202a506798dd9bb3c296dbfb4ff0e0a70f30f24/steps/step_1/tree/data/covidtracking/states-daily.json + '@type': + - http://www.w3.org/ns/prov#Generation + http://www.w3.org/ns/prov#activity: + - '@id': https://localhost/activities/commit/6202a506798dd9bb3c296dbfb4ff0e0a70f30f24 +- '@id': https://localhost/activities/commit/6202a506798dd9bb3c296dbfb4ff0e0a70f30f24/steps/step_1/tree/data/covidtracking/states-metadata.json + '@type': + - http://www.w3.org/ns/prov#Generation + http://www.w3.org/ns/prov#activity: + - '@id': https://localhost/activities/commit/6202a506798dd9bb3c296dbfb4ff0e0a70f30f24 +- '@id': https://renkulab.io/blob/6202a506798dd9bb3c296dbfb4ff0e0a70f30f24/data/covidtracking + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Collection + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': data/covidtracking@6202a506798dd9bb3c296dbfb4ff0e0a70f30f24 + http://www.w3.org/ns/prov#atLocation: + - '@value': data/covidtracking + http://www.w3.org/ns/prov#hadMember: + - '@id': https://renkulab.io/blob/6202a506798dd9bb3c296dbfb4ff0e0a70f30f24/data/covidtracking/states-daily.json + - '@id': https://renkulab.io/blob/6202a506798dd9bb3c296dbfb4ff0e0a70f30f24/data/covidtracking/states-metadata.json + http://www.w3.org/ns/prov#qualifiedGeneration: + - '@id': https://localhost/activities/commit/6202a506798dd9bb3c296dbfb4ff0e0a70f30f24/steps/step_1/outputs/2 +- '@id': https://renkulab.io/blob/6202a506798dd9bb3c296dbfb4ff0e0a70f30f24/data/covidtracking/states-daily.json + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': data/covidtracking/states-daily.json@6202a506798dd9bb3c296dbfb4ff0e0a70f30f24 + http://www.w3.org/ns/prov#atLocation: + - '@value': data/covidtracking/states-daily.json + http://www.w3.org/ns/prov#qualifiedGeneration: + - '@id': https://localhost/activities/commit/6202a506798dd9bb3c296dbfb4ff0e0a70f30f24/steps/step_1/tree/data/covidtracking/states-daily.json +- '@id': https://renkulab.io/blob/6202a506798dd9bb3c296dbfb4ff0e0a70f30f24/data/covidtracking/states-metadata.json + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': data/covidtracking/states-metadata.json@6202a506798dd9bb3c296dbfb4ff0e0a70f30f24 + http://www.w3.org/ns/prov#atLocation: + - '@value': data/covidtracking/states-metadata.json + http://www.w3.org/ns/prov#qualifiedGeneration: + - '@id': https://localhost/activities/commit/6202a506798dd9bb3c296dbfb4ff0e0a70f30f24/steps/step_1/tree/data/covidtracking/states-metadata.json +- '@id': https://renkulab.io/blob/6202a506798dd9bb3c296dbfb4ff0e0a70f30f24/runs/download-covidtracking-data.runs.ipynb + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': runs/download-covidtracking-data.runs.ipynb@6202a506798dd9bb3c296dbfb4ff0e0a70f30f24 + http://www.w3.org/ns/prov#atLocation: + - '@value': runs/download-covidtracking-data.runs.ipynb + http://www.w3.org/ns/prov#qualifiedGeneration: + - '@id': https://localhost/activities/commit/6202a506798dd9bb3c296dbfb4ff0e0a70f30f24/steps/step_1/outputs/4 +- '@id': https://renkulab.io/blob/ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658/data/covidtracking + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Collection + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': data/covidtracking@ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658 + http://www.w3.org/ns/prov#atLocation: + - '@value': data/covidtracking + http://www.w3.org/ns/prov#hadMember: + - '@id': https://renkulab.io/blob/ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658/data/covidtracking/states-daily.json + - '@id': https://renkulab.io/blob/ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658/data/covidtracking/states-metadata.json +- '@id': https://renkulab.io/blob/ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658/data/covidtracking/states-daily.json + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - 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