diff --git a/notebooks/covid-19-us-nyt.ipynb b/notebooks/covid-19-us-nyt.ipynb
index 41a7002ffd462a870c1760ae77bafb716e153540..d5f45721879b5cf9ce571de23abf9a38e363672f 100644
--- a/notebooks/covid-19-us-nyt.ipynb
+++ b/notebooks/covid-19-us-nyt.ipynb
@@ -11,7 +11,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 1,
+   "execution_count": null,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -21,7 +21,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 2,
+   "execution_count": null,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -36,7 +36,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 3,
+   "execution_count": null,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -46,19 +46,33 @@
     "  <a href=\"https://github.com/pcm-dpc/COVID-19\">Italian Civil Protection</a>, <a href=\"https://wikidata.org\">Wikidata</a> \n",
     "<br>\n",
     "Analysis and Visualization:\n",
-    "  <a href=\"https://renkulab.io/projects/covid-19/covid-19-public-data\">Covid-19 Public Data Collaboration Project</a>\n",
+    "  <a href=\"https://renkulab.io/projects/covid-19/covid-19-public-data\">Covid-19 Public Data Collaboration Project @ renkulab.io</a>\n",
     "</p>''')"
    ]
   },
   {
    "cell_type": "code",
-   "execution_count": 4,
+   "execution_count": null,
+   "metadata": {
+    "tags": [
+     "parameters"
+    ]
+   },
+   "outputs": [],
+   "source": [
+    "data_path = '../data/covid-19-us-nyt'\n",
+    "italy_data_path = '../data/covid-19-italy/dpc-covid19-ita-regioni.csv'\n",
+    "atlas_path = '../data/atlas'"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
    "metadata": {},
    "outputs": [],
    "source": [
-    "data_folder = \"../../data/covid-19-us-nyt/\"\n",
-    "converter = CaseConverter('../../data/atlas')\n",
-    "df = converter.read_convert(data_folder).rename(columns={'region_label':'state', 'admin2_label': 'county'})\n",
+    "converter = CaseConverter(atlas_path)\n",
+    "df = converter.read_convert(data_path).rename(columns={'region_label':'state', 'admin2_label': 'county'})\n",
     "df['county_state'] = df.apply(lambda row: f\"{row['county']}, {row['state']}\", axis=1)"
    ]
   },
@@ -73,7 +87,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 5,
+   "execution_count": null,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -84,12 +98,12 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 6,
+   "execution_count": null,
    "metadata": {},
    "outputs": [],
    "source": [
     "# We will use Lombardy, Italy for comparison\n",
-    "df_ita = converter.read_convert('../../data/covid-19-italy/dpc-covid19-ita-regioni.csv')\n",
+    "df_ita = converter.read_convert(italy_data_path)\n",
     "df_lombardy = df_ita.loc[df_ita.region_label=='Lombardy'].copy()\n",
     "df_lombardy['county_state'] = df_lombardy.apply(lambda row: f'{row[\"region_label\"]}, Italy', axis=1)\n",
     "df_lombardy.date = pd.to_datetime(df_lombardy.date)"
@@ -97,7 +111,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 7,
+   "execution_count": null,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -109,87 +123,9 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 8,
+   "execution_count": null,
    "metadata": {},
-   "outputs": [
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\"Italy\", \"region_iso\": \"IT-25\", \"state\": null, \"admin2\": \"\", \"county\": null, \"tested\": 159331.0, \"positive\": 52325, \"deceased\": 9484, \"positive_100k\": 519.7420529875658, \"deceased_100k\": 94.20417831885473, \"tested_100k\": 1582.6282091650614, \"county_state\": \"Lombardy, Italy\", \"region_label\": \"Lombardy\", \"admin2_label\": \"\"}, {\"date\": \"2020-04-08T17:00:00\", \"country\": \"ITA\", \"country_label\": \"Italy\", \"region_iso\": \"IT-25\", \"state\": null, \"admin2\": \"\", \"county\": null, \"tested\": 167557.0, \"positive\": 53414, \"deceased\": 9722, \"positive_100k\": 530.5590447831406, \"deceased_100k\": 96.56822243946706, \"tested_100k\": 1664.3367257035363, \"county_state\": \"Lombardy, Italy\", \"region_label\": \"Lombardy\", \"admin2_label\": \"\"}]}}, {\"mode\": \"vega-lite\"});\n",
-       "</script>"
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-      "text/plain": [
-       "alt.HConcatChart(...)"
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-     "metadata": {},
-     "output_type": "display_data"
-    },
-    {
-     "data": {
-      "text/html": [
-       "\n",
-       "<p style=\"font-size: smaller\">Data Sources: \n",
-       "  <a href=\"https://github.com/nytimes/covid-19-data\">New York Times</a>, <a href=\"https://www.census.gov/\">U.S. Census</a>,\n",
-       "  <a href=\"https://github.com/pcm-dpc/COVID-19\">Italian Civil Protection</a>, <a href=\"https://wikidata.org\">Wikidata</a> \n",
-       "<br>\n",
-       "Analysis and Visualization:\n",
-       "  <a href=\"https://renkulab.io/projects/covid-19/covid-19-public-data\">Covid-19 Public Data Collaboration Project</a>\n",
-       "</p>"
-      ],
-      "text/plain": [
-       "<IPython.core.display.HTML object>"
-      ]
-     },
-     "metadata": {},
-     "output_type": "display_data"
-    }
-   ],
+   "outputs": [],
    "source": [
     "base = alt.Chart(top10_df)\n",
     "\n",
@@ -234,7 +170,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 9,
+   "execution_count": null,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -243,87 +179,9 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 15,
+   "execution_count": null,
    "metadata": {},
-   "outputs": [
-    {
-     "data": {
-      "text/html": [
-       "\n",
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-       "\n",
-       "    function showError(err) {\n",
-       "      outputDiv.innerHTML = `<div class=\"error\" style=\"color:red;\">${err}</div>`;\n",
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-       "        .catch(err => showError(`Javascript Error: ${err.message}<br>This usually means there's a typo in your chart specification. See the javascript console for the full traceback.`));\n",
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-       "      displayChart(vegaEmbed);\n",
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-       "</script>"
-      ],
-      "text/plain": [
-       "alt.HConcatChart(...)"
-      ]
-     },
-     "metadata": {},
-     "output_type": "display_data"
-    },
-    {
-     "data": {
-      "text/html": [
-       "\n",
-       "<p style=\"font-size: smaller\">Data Sources: \n",
-       "  <a href=\"https://github.com/nytimes/covid-19-data\">New York Times</a>, <a href=\"https://www.census.gov/\">U.S. Census</a>,\n",
-       "  <a href=\"https://github.com/pcm-dpc/COVID-19\">Italian Civil Protection</a>, <a href=\"https://wikidata.org\">Wikidata</a> \n",
-       "<br>\n",
-       "Analysis and Visualization:\n",
-       "  <a href=\"https://renkulab.io/projects/covid-19/covid-19-public-data\">Covid-19 Public Data Collaboration Project</a>\n",
-       "</p>"
-      ],
-      "text/plain": [
-       "<IPython.core.display.HTML object>"
-      ]
-     },
-     "metadata": {},
-     "output_type": "display_data"
-    }
-   ],
+   "outputs": [],
    "source": [
     "chart = plotting.make_region_since_chart(\n",
     "    alt.Chart(since_df), \n",