diff --git a/notebooks/Dashboard.ipynb b/notebooks/Dashboard.ipynb index 102054769eb5f7a858d9f159184a874f777e8129..72c5d7c250752ac47bff41d84238aa17041a6e87 100644 --- a/notebooks/Dashboard.ipynb +++ b/notebooks/Dashboard.ipynb @@ -188,7 +188,7 @@ "outputs": [], "source": [ "# select countries over a certain per capita case threshold\n", - "per_capita_thresh = 300\n", + "per_capita_thresh = 500\n", "countries_over_thresh_per_capita = latest_df[latest_df.positive_100k > per_capita_thresh].country_label\n", "countries_over_thresh_per_capita = [c for c in countries_over_thresh_per_capita if c not in set(['Andorra', 'Iceland', 'San Marino'])]\n", "\n", @@ -243,10 +243,10 @@ "metadata": {}, "outputs": [], "source": [ - "since_df = helper.make_since_df(\n", - " jhu_df[jhu_df.country_label.isin(countries_over_thresh_per_capita)], \n", - " region_column='country_label'\n", - ")" + "# since_df = helper.make_since_df(\n", + "# jhu_df[jhu_df.country_label.isin(countries_over_thresh_per_capita)], \n", + "# region_column='country_label'\n", + "# )" ] }, { @@ -255,28 +255,28 @@ "metadata": {}, "outputs": [], "source": [ - "sort_order = since_df.groupby(\n", - " 'country_label').max().sort_values(\n", - " 'positive', ascending=False).index.tolist()\n", - "# Exclude China in this plot because its numbers are far greater then everywhere else\n", - "sort_order = [o for o in sort_order if o != 'China']\n", - "chart = helper.facetted_growth_plot(\n", - " since_df[since_df['country_label'] != 'China'], \n", - " 'sinceDay0',\n", - " 'positive_100k',\n", - " sort_order,\n", - " 'Italy',\n", - " \"Growth of cases per 100k population from case 100, compared to Italy\",\n", - " \"Cases/100k\"\n", - ")\n", - "display(chart)\n", - "display(HTML('''\n", - "<p style=\"font-size: smaller\">Data Sources: \n", - " <a href=\"https://github.com/CSSEGISandData/COVID-19\">JHU CSSE</a>,\n", - " <a href=\"https://data.worldbank.org/indicator/SP.POP.TOTL\">World Bank</a>,\n", - " <a href=\"https://worldmap.harvard.edu/data/geonode:country_centroids_az8\">Harvard Worldmap</a>\n", - "</p>\n", - "<p style=\"font-size: smaller\">Inspired by <a href=\"https://covid19dashboards.com/growth-analysis/\">Thomas Wiecki</a>'''))" + "# sort_order = since_df.groupby(\n", + "# 'country_label').max().sort_values(\n", + "# 'positive', ascending=False).index.tolist()\n", + "# # Exclude China in this plot because its numbers are far greater then everywhere else\n", + "# sort_order = [o for o in sort_order if o != 'China']\n", + "# chart = helper.facetted_growth_plot(\n", + "# since_df[since_df['country_label'] != 'China'], \n", + "# 'sinceDay0',\n", + "# 'positive_100k',\n", + "# sort_order,\n", + "# 'Italy',\n", + "# \"Growth of cases per 100k population from case 100, compared to Italy\",\n", + "# \"Cases/100k\"\n", + "# )\n", + "# display(chart)\n", + "# display(HTML('''\n", + "# <p style=\"font-size: smaller\">Data Sources: \n", + "# <a href=\"https://github.com/CSSEGISandData/COVID-19\">JHU CSSE</a>,\n", + "# <a href=\"https://data.worldbank.org/indicator/SP.POP.TOTL\">World Bank</a>,\n", + "# <a href=\"https://worldmap.harvard.edu/data/geonode:country_centroids_az8\">Harvard Worldmap</a>\n", + "# </p>\n", + "# <p style=\"font-size: smaller\">Inspired by <a href=\"https://covid19dashboards.com/growth-analysis/\">Thomas Wiecki</a>'''))" ] }, { @@ -286,23 +286,23 @@ "outputs": [], "source": [ "# Same with log scale\n", - "chart = helper.facetted_growth_plot(\n", - " since_df, \n", - " 'sinceDay0',\n", - " 'positive_100k',\n", - " sort_order,\n", - " 'Italy',\n", - " \"Growth of cases per 100k population from case 100, compared to Italy (log scale)\",\n", - " \"Cases/100k\",\n", - " 'log'\n", - ")\n", - "display(chart)\n", - "display(HTML('''\n", - "<p style=\"font-size: smaller\">Data Sources: \n", - " <a href=\"https://github.com/CSSEGISandData/COVID-19\">JHU CSSE</a>,\n", - " <a href=\"https://data.worldbank.org/indicator/SP.POP.TOTL\">World Bank</a>,\n", - " <a href=\"https://worldmap.harvard.edu/data/geonode:country_centroids_az8\">Harvard Worldmap</a>\n", - "</p>'''))" + "# chart = helper.facetted_growth_plot(\n", + "# since_df, \n", + "# 'sinceDay0',\n", + "# 'positive_100k',\n", + "# sort_order,\n", + "# 'Italy',\n", + "# \"Growth of cases per 100k population from case 100, compared to Italy (log scale)\",\n", + "# \"Cases/100k\",\n", + "# 'log'\n", + "# )\n", + "# display(chart)\n", + "# display(HTML('''\n", + "# <p style=\"font-size: smaller\">Data Sources: \n", + "# <a href=\"https://github.com/CSSEGISandData/COVID-19\">JHU CSSE</a>,\n", + "# <a href=\"https://data.worldbank.org/indicator/SP.POP.TOTL\">World Bank</a>,\n", + "# <a href=\"https://worldmap.harvard.edu/data/geonode:country_centroids_az8\">Harvard Worldmap</a>\n", + "# </p>'''))" ] }, {