From 36d24ee4bace9dc9986fc1735531a9d0db2c60b9 Mon Sep 17 00:00:00 2001 From: Rok Roskar <rok.roskar@sdsc.ethz.ch> Date: Thu, 27 May 2021 18:31:24 +0200 Subject: [PATCH] renku migrate: committing migrated workflow --- .renku/activity_index.yaml | 8 + ...dc93d1094a6e8c0467df2423ffba_migrated.yaml | 434 ++++++++++++++++++ .../4999a116583346fc8f64f137bece2787.cwl | 120 ----- 3 files changed, 442 insertions(+), 120 deletions(-) create mode 100644 .renku/workflow/3adbdc93d1094a6e8c0467df2423ffba_migrated.yaml delete mode 100644 .renku/workflow/4999a116583346fc8f64f137bece2787.cwl diff --git a/.renku/activity_index.yaml b/.renku/activity_index.yaml index e3dfd6a7e..820cd07c9 100644 --- a/.renku/activity_index.yaml +++ b/.renku/activity_index.yaml @@ -383,6 +383,8 @@ data/covidtracking: - .renku/workflow/c1f8efc7d0c04dee8b8771c3f0c5bbd6_migrated.yaml 96c70b3350fc96218bb496de652e6e8457bd9bb5: - .renku/workflow/cdadb507cf6447558387130f9d193565_migrated.yaml + 98200174e0d54a29fc3f7d3ffe756f86be9e50b1: + - .renku/workflow/3adbdc93d1094a6e8c0467df2423ffba_migrated.yaml 991e81a0e912e04d726939596e099dfee68896f3: - .renku/workflow/d2aefee62df2496887b570dda80350a0_migrated.yaml 9a18ef0a0158f136d9c7ad21816da42625797714: @@ -853,6 +855,8 @@ data/covidtracking/states-daily.json: - .renku/workflow/c1f8efc7d0c04dee8b8771c3f0c5bbd6_migrated.yaml 96c70b3350fc96218bb496de652e6e8457bd9bb5: - .renku/workflow/cdadb507cf6447558387130f9d193565_migrated.yaml + 98200174e0d54a29fc3f7d3ffe756f86be9e50b1: + - .renku/workflow/3adbdc93d1094a6e8c0467df2423ffba_migrated.yaml 991e81a0e912e04d726939596e099dfee68896f3: - .renku/workflow/d2aefee62df2496887b570dda80350a0_migrated.yaml 9a18ef0a0158f136d9c7ad21816da42625797714: @@ -1322,6 +1326,8 @@ data/covidtracking/states-metadata.json: - .renku/workflow/c1f8efc7d0c04dee8b8771c3f0c5bbd6_migrated.yaml 96c70b3350fc96218bb496de652e6e8457bd9bb5: - .renku/workflow/cdadb507cf6447558387130f9d193565_migrated.yaml + 98200174e0d54a29fc3f7d3ffe756f86be9e50b1: + - .renku/workflow/3adbdc93d1094a6e8c0467df2423ffba_migrated.yaml 991e81a0e912e04d726939596e099dfee68896f3: - .renku/workflow/d2aefee62df2496887b570dda80350a0_migrated.yaml 9a18ef0a0158f136d9c7ad21816da42625797714: @@ -2788,6 +2794,8 @@ runs/download-covidtracking-data.runs.ipynb: - .renku/workflow/c1f8efc7d0c04dee8b8771c3f0c5bbd6_migrated.yaml 96c70b3350fc96218bb496de652e6e8457bd9bb5: - .renku/workflow/cdadb507cf6447558387130f9d193565_migrated.yaml + 98200174e0d54a29fc3f7d3ffe756f86be9e50b1: + - .renku/workflow/3adbdc93d1094a6e8c0467df2423ffba_migrated.yaml 991e81a0e912e04d726939596e099dfee68896f3: - .renku/workflow/d2aefee62df2496887b570dda80350a0_migrated.yaml 9a18ef0a0158f136d9c7ad21816da42625797714: diff --git a/.renku/workflow/3adbdc93d1094a6e8c0467df2423ffba_migrated.yaml b/.renku/workflow/3adbdc93d1094a6e8c0467df2423ffba_migrated.yaml new file mode 100644 index 000000000..548f973a7 --- /dev/null +++ b/.renku/workflow/3adbdc93d1094a6e8c0467df2423ffba_migrated.yaml @@ -0,0 +1,434 @@ +- '@id': https://github.com/swissdatasciencecenter/renku-python/tree/v0.10.4 + '@type': + - http://purl.org/wf4ever/wfprov#WorkflowEngine + - http://www.w3.org/ns/prov#SoftwareAgent + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': renku 0.10.4 +- '@id': https://github.com/swissdatasciencecenter/renku-python/tree/v0.15.1 + '@type': + - http://purl.org/wf4ever/wfprov#WorkflowEngine + - http://www.w3.org/ns/prov#SoftwareAgent + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': renku 0.15.1 +- '@id': https://localhost/activities/commit/98200174e0d54a29fc3f7d3ffe756f86be9e50b1 + '@type': + - http://purl.org/wf4ever/wfprov#ProcessRun + - http://purl.org/wf4ever/wfprov#WorkflowRun + - http://www.w3.org/ns/prov#Activity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#comment: + - '@value': renku rerun data/covidtracking/states-metadata.json data/covidtracking/states-daily.json + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': .renku/workflow/3adbdc93d1094a6e8c0467df2423ffba_migrated.yaml@98200174e0d54a29fc3f7d3ffe756f86be9e50b1 + http://www.w3.org/ns/prov#atLocation: + - '@value': .renku/workflow/3adbdc93d1094a6e8c0467df2423ffba_migrated.yaml + http://www.w3.org/ns/prov#endedAtTime: + - '@type': http://www.w3.org/2001/XMLSchema#dateTime + '@value': '2020-11-27T07:36:50+00:00' + http://www.w3.org/ns/prov#influenced: [] + http://www.w3.org/ns/prov#qualifiedAssociation: + - '@id': https://localhost/activities/commit/98200174e0d54a29fc3f7d3ffe756f86be9e50b1/association + http://www.w3.org/ns/prov#qualifiedUsage: + - '@id': https://localhost/activities/commit/98200174e0d54a29fc3f7d3ffe756f86be9e50b1/inputs/1 + http://www.w3.org/ns/prov#startedAtTime: + - '@type': http://www.w3.org/2001/XMLSchema#dateTime + '@value': '2020-11-27T07:36:50+00:00' + http://www.w3.org/ns/prov#wasAssociatedWith: + - '@id': mailto:beepbop@example.com + - '@id': https://github.com/swissdatasciencecenter/renku-python/tree/v0.15.1 + http://www.w3.org/ns/prov#wasInformedBy: + - '@id': https://localhost/activities/commit/4eb5e98a4f5c60b145590607efa810daab60bca3 +- '@id': https://localhost/activities/commit/98200174e0d54a29fc3f7d3ffe756f86be9e50b1/association + '@type': + - http://www.w3.org/ns/prov#Association + http://www.w3.org/ns/prov#agent: + - '@id': https://github.com/swissdatasciencecenter/renku-python/tree/v0.10.4 + http://www.w3.org/ns/prov#hadPlan: + - '@id': https://renkulab.io/runs/6ec274b6740c40dfca8a4703437ef53438eebc77 +- '@id': https://localhost/activities/commit/98200174e0d54a29fc3f7d3ffe756f86be9e50b1/inputs/1 + '@type': + - http://www.w3.org/ns/prov#Usage + http://www.w3.org/ns/prov#entity: + - '@id': https://renkulab.io/blob/d754df040a4bf8f7cb7ae6ed4151830f9bb0f520/notebooks/process/download-covidtracking-data.ipynb + http://www.w3.org/ns/prov#hadRole: + - '@value': steps/step_1/inputs/3 +- '@id': https://localhost/activities/commit/98200174e0d54a29fc3f7d3ffe756f86be9e50b1/steps/step_1 + '@type': + - http://purl.org/wf4ever/wfprov#ProcessRun + - http://www.w3.org/ns/prov#Activity + http://purl.org/wf4ever/wfprov#wasPartOfWorkflowRun: + - '@id': https://localhost/activities/commit/98200174e0d54a29fc3f7d3ffe756f86be9e50b1 + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#comment: + - '@value': renku rerun data/covidtracking/states-metadata.json data/covidtracking/states-daily.json + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': .renku/workflow/3adbdc93d1094a6e8c0467df2423ffba_migrated.yaml@98200174e0d54a29fc3f7d3ffe756f86be9e50b1 + http://www.w3.org/ns/prov#atLocation: + - '@value': .renku/workflow/3adbdc93d1094a6e8c0467df2423ffba_migrated.yaml + http://www.w3.org/ns/prov#endedAtTime: + - '@type': http://www.w3.org/2001/XMLSchema#dateTime + '@value': '2020-11-27T07:36:50+00:00' + http://www.w3.org/ns/prov#influenced: [] + http://www.w3.org/ns/prov#qualifiedAssociation: + - '@id': https://localhost/activities/commit/98200174e0d54a29fc3f7d3ffe756f86be9e50b1/steps/step_1/association + http://www.w3.org/ns/prov#qualifiedUsage: + - '@id': https://localhost/activities/commit/98200174e0d54a29fc3f7d3ffe756f86be9e50b1/steps/step_1/inputs/3 + http://www.w3.org/ns/prov#startedAtTime: + - '@type': http://www.w3.org/2001/XMLSchema#dateTime + '@value': '2020-11-27T07:36:50+00:00' + http://www.w3.org/ns/prov#wasAssociatedWith: + - '@id': mailto:beepbop@example.com + - '@id': https://github.com/swissdatasciencecenter/renku-python/tree/v0.15.1 + http://www.w3.org/ns/prov#wasInformedBy: + - '@id': https://localhost/activities/commit/4eb5e98a4f5c60b145590607efa810daab60bca3 + https://swissdatasciencecenter.github.io/renku-ontology#hasRunParameter: [] +- '@id': https://localhost/activities/commit/98200174e0d54a29fc3f7d3ffe756f86be9e50b1/steps/step_1/association + '@type': + - http://www.w3.org/ns/prov#Association + http://www.w3.org/ns/prov#agent: + - '@id': https://github.com/swissdatasciencecenter/renku-python/tree/v0.10.4 + http://www.w3.org/ns/prov#hadPlan: + - '@id': https://renkulab.io/runs/9f33e2b60c8d512704f34373e996a93efd3ac44f +- '@id': https://localhost/activities/commit/98200174e0d54a29fc3f7d3ffe756f86be9e50b1/steps/step_1/inputs/3 + '@type': + - http://www.w3.org/ns/prov#Usage + http://www.w3.org/ns/prov#entity: + - '@id': https://renkulab.io/blob/d754df040a4bf8f7cb7ae6ed4151830f9bb0f520/notebooks/process/download-covidtracking-data.ipynb + http://www.w3.org/ns/prov#hadRole: + - '@value': inputs/3 +- '@id': https://localhost/activities/commit/98200174e0d54a29fc3f7d3ffe756f86be9e50b1/steps/step_1/outputs/2 + '@type': + - http://www.w3.org/ns/prov#Generation + http://www.w3.org/ns/prov#activity: + - '@id': https://localhost/activities/commit/98200174e0d54a29fc3f7d3ffe756f86be9e50b1/steps/step_1 + - '@id': https://localhost/activities/commit/98200174e0d54a29fc3f7d3ffe756f86be9e50b1 + http://www.w3.org/ns/prov#hadRole: + - '@value': outputs/2 +- '@id': https://localhost/activities/commit/98200174e0d54a29fc3f7d3ffe756f86be9e50b1/steps/step_1/outputs/4 + '@type': + - http://www.w3.org/ns/prov#Generation + http://www.w3.org/ns/prov#activity: + - '@id': https://localhost/activities/commit/98200174e0d54a29fc3f7d3ffe756f86be9e50b1/steps/step_1 + - '@id': https://localhost/activities/commit/98200174e0d54a29fc3f7d3ffe756f86be9e50b1 + http://www.w3.org/ns/prov#hadRole: + - '@value': outputs/4 +- '@id': https://localhost/activities/commit/98200174e0d54a29fc3f7d3ffe756f86be9e50b1/steps/step_1/tree/data/covidtracking/states-daily.json + '@type': + - http://www.w3.org/ns/prov#Generation + http://www.w3.org/ns/prov#activity: + - '@id': https://localhost/activities/commit/98200174e0d54a29fc3f7d3ffe756f86be9e50b1 +- '@id': https://localhost/activities/commit/98200174e0d54a29fc3f7d3ffe756f86be9e50b1/steps/step_1/tree/data/covidtracking/states-metadata.json + '@type': + - http://www.w3.org/ns/prov#Generation + http://www.w3.org/ns/prov#activity: + - '@id': https://localhost/activities/commit/98200174e0d54a29fc3f7d3ffe756f86be9e50b1 +- '@id': https://renkulab.io/blob/98200174e0d54a29fc3f7d3ffe756f86be9e50b1/data/covidtracking + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Collection + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': data/covidtracking@98200174e0d54a29fc3f7d3ffe756f86be9e50b1 + http://www.w3.org/ns/prov#atLocation: + - '@value': data/covidtracking + http://www.w3.org/ns/prov#hadMember: + - '@id': https://renkulab.io/blob/98200174e0d54a29fc3f7d3ffe756f86be9e50b1/data/covidtracking/states-daily.json + - '@id': https://renkulab.io/blob/98200174e0d54a29fc3f7d3ffe756f86be9e50b1/data/covidtracking/states-metadata.json + http://www.w3.org/ns/prov#qualifiedGeneration: + - '@id': https://localhost/activities/commit/98200174e0d54a29fc3f7d3ffe756f86be9e50b1/steps/step_1/outputs/2 +- '@id': https://renkulab.io/blob/98200174e0d54a29fc3f7d3ffe756f86be9e50b1/data/covidtracking/states-daily.json + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': data/covidtracking/states-daily.json@98200174e0d54a29fc3f7d3ffe756f86be9e50b1 + http://www.w3.org/ns/prov#atLocation: + - '@value': data/covidtracking/states-daily.json + http://www.w3.org/ns/prov#qualifiedGeneration: + - '@id': https://localhost/activities/commit/98200174e0d54a29fc3f7d3ffe756f86be9e50b1/steps/step_1/tree/data/covidtracking/states-daily.json +- '@id': https://renkulab.io/blob/98200174e0d54a29fc3f7d3ffe756f86be9e50b1/data/covidtracking/states-metadata.json + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': data/covidtracking/states-metadata.json@98200174e0d54a29fc3f7d3ffe756f86be9e50b1 + http://www.w3.org/ns/prov#atLocation: + - '@value': data/covidtracking/states-metadata.json + http://www.w3.org/ns/prov#qualifiedGeneration: + - '@id': https://localhost/activities/commit/98200174e0d54a29fc3f7d3ffe756f86be9e50b1/steps/step_1/tree/data/covidtracking/states-metadata.json +- '@id': https://renkulab.io/blob/98200174e0d54a29fc3f7d3ffe756f86be9e50b1/runs/download-covidtracking-data.runs.ipynb + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': runs/download-covidtracking-data.runs.ipynb@98200174e0d54a29fc3f7d3ffe756f86be9e50b1 + http://www.w3.org/ns/prov#atLocation: + - '@value': runs/download-covidtracking-data.runs.ipynb + http://www.w3.org/ns/prov#qualifiedGeneration: + - '@id': https://localhost/activities/commit/98200174e0d54a29fc3f7d3ffe756f86be9e50b1/steps/step_1/outputs/4 +- '@id': https://renkulab.io/blob/ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658/data/covidtracking + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Collection + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': data/covidtracking@ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658 + http://www.w3.org/ns/prov#atLocation: + - '@value': data/covidtracking + http://www.w3.org/ns/prov#hadMember: + - '@id': https://renkulab.io/blob/ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658/data/covidtracking/states-daily.json + - '@id': https://renkulab.io/blob/ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658/data/covidtracking/states-metadata.json +- '@id': https://renkulab.io/blob/ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658/data/covidtracking/states-daily.json + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': data/covidtracking/states-daily.json@ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658 + http://www.w3.org/ns/prov#atLocation: + - '@value': data/covidtracking/states-daily.json +- '@id': https://renkulab.io/blob/ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658/data/covidtracking/states-metadata.json + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': data/covidtracking/states-metadata.json@ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658 + http://www.w3.org/ns/prov#atLocation: + - '@value': data/covidtracking/states-metadata.json +- '@id': https://renkulab.io/blob/ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658/runs/download-covidtracking-data.runs.ipynb + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': runs/download-covidtracking-data.runs.ipynb@ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658 + http://www.w3.org/ns/prov#atLocation: + - '@value': runs/download-covidtracking-data.runs.ipynb +- '@id': https://renkulab.io/blob/d754df040a4bf8f7cb7ae6ed4151830f9bb0f520/notebooks/process/download-covidtracking-data.ipynb + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': notebooks/process/download-covidtracking-data.ipynb@d754df040a4bf8f7cb7ae6ed4151830f9bb0f520 + http://www.w3.org/ns/prov#atLocation: + - '@value': notebooks/process/download-covidtracking-data.ipynb +- '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + '@type': + - http://schema.org/Project + - http://www.w3.org/ns/prov#Location + http://schema.org/agent: + - '@value': pre-0.11.0 + http://schema.org/creator: + - '@id': mailto:cramakri@ethz.ch + http://schema.org/dateCreated: + - '@value': '2020-03-11T21:43:12.736000+00:00' + http://schema.org/name: + - '@value': covid-19-dashboard + http://schema.org/schemaVersion: + - '@value': '4' + https://swissdatasciencecenter.github.io/renku-ontology#automatedTemplateUpdate: + - '@value': false + https://swissdatasciencecenter.github.io/renku-ontology#immutableTemplateFiles: [] +- '@id': https://renkulab.io/runs/6ec274b6740c40dfca8a4703437ef53438eebc77 + '@type': + - http://www.w3.org/ns/prov#Entity + - http://www.w3.org/ns/prov#Plan + - https://swissdatasciencecenter.github.io/renku-ontology#Run + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://schema.org/keywords: [] + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': .renku/workflow/4999a116583346fc8f64f137bece2787.cwl@98200174e0d54a29fc3f7d3ffe756f86be9e50b1 + http://www.w3.org/ns/prov#atLocation: + - '@value': .renku/workflow/3adbdc93d1094a6e8c0467df2423ffba_migrated.yaml + https://swissdatasciencecenter.github.io/renku-ontology#hasArguments: [] + https://swissdatasciencecenter.github.io/renku-ontology#hasInputs: + - '@id': https://renkulab.io/runs/6ec274b6740c40dfca8a4703437ef53438eebc77/steps/step_1/inputs/3 + https://swissdatasciencecenter.github.io/renku-ontology#hasOutputs: + - '@id': https://renkulab.io/runs/6ec274b6740c40dfca8a4703437ef53438eebc77/steps/step_1/outputs/4 + - '@id': https://renkulab.io/runs/6ec274b6740c40dfca8a4703437ef53438eebc77/steps/step_1/outputs/2 + https://swissdatasciencecenter.github.io/renku-ontology#hasRunParameters: [] + https://swissdatasciencecenter.github.io/renku-ontology#hasSubprocess: + - 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'@value': Command Output "None" + https://swissdatasciencecenter.github.io/renku-ontology#createFolder: + - '@value': true + https://swissdatasciencecenter.github.io/renku-ontology#position: + - '@value': 4 + https://swissdatasciencecenter.github.io/renku-ontology#produces: + - '@id': https://renkulab.io/blob/ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658/runs/download-covidtracking-data.runs.ipynb +- '@id': mailto:beepbop@example.com + '@type': + - http://schema.org/Person + - http://www.w3.org/ns/prov#Person + http://schema.org/email: + - '@value': beepbop@example.com + http://schema.org/name: + - '@value': CR (covid cron) + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': CR (covid cron) +- '@id': mailto:cramakri@ethz.ch + '@type': + - http://schema.org/Person + - http://www.w3.org/ns/prov#Person + http://schema.org/email: + - '@value': cramakri@ethz.ch + http://schema.org/name: + - '@value': Chandrasekhar Ramakrishnan + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': Chandrasekhar Ramakrishnan diff --git a/.renku/workflow/4999a116583346fc8f64f137bece2787.cwl b/.renku/workflow/4999a116583346fc8f64f137bece2787.cwl deleted file mode 100644 index fe39d4a62..000000000 --- a/.renku/workflow/4999a116583346fc8f64f137bece2787.cwl +++ /dev/null @@ -1,120 +0,0 @@ -class: Workflow -cwlVersion: v1.0 -hints: [] -inputs: - input_1: - default: out_folder - streamable: false - type: string - input_2: - default: data/covidtracking - streamable: false - type: string - input_3: - default: - class: File - path: ../../notebooks/process/download-covidtracking-data.ipynb - streamable: false - type: File - input_4: - default: runs/download-covidtracking-data.runs.ipynb - streamable: false - type: string - input_5: - default: states-daily.json - streamable: false - type: string - input_6: - default: states-metadata.json - streamable: false - type: string -outputs: - output_0: - outputSource: step_1/output_0 - streamable: false - type: File - output_1: - outputSource: step_1/output_1 - streamable: false - type: Directory -requirements: [] -steps: - step_1: - in: - input_1: input_1 - input_2: input_2 - input_3: input_3 - input_4: input_4 - out: - - output_1 - - output_0 - run: a17d560c41a54f5aa307ce5f3c5effe5_papermill.cwl - step_2: - in: - filename: input_5 - input_directory: step_1/output_1 - out: - - output_file - run: - arguments: [] - baseCommand: - - 'true' - class: CommandLineTool - cwlVersion: v1.0 - hints: [] - inputs: - filename: - default: states-daily.json - streamable: false - type: string - input_directory: - streamable: false - type: Directory - outputs: - output_file: - outputBinding: - glob: $(inputs.filename) - streamable: false - type: File - permanentFailCodes: [] - requirements: - - &id001 - class: InlineJavascriptRequirement - - &id002 - class: InitialWorkDirRequirement - listing: $(inputs.input_directory.listing) - successCodes: [] - temporaryFailCodes: [] - step_3: - in: - filename: input_6 - input_directory: step_1/output_1 - out: - - output_file - run: - arguments: [] - baseCommand: - - 'true' - class: CommandLineTool - cwlVersion: v1.0 - hints: [] - inputs: - filename: - default: states-metadata.json - streamable: false - type: string - input_directory: - streamable: false - type: Directory - outputs: - output_file: - outputBinding: - glob: $(inputs.filename) - streamable: false - type: File - permanentFailCodes: [] - requirements: - - *id001 - - *id002 - successCodes: [] - temporaryFailCodes: [] -- GitLab