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+ input_15: + default: atlas_path + streamable: false + type: string + input_16: + default: + class: Directory + listing: [] + path: ../../data/atlas + streamable: false + type: Directory + input_17: + default: + class: File + path: ../../notebooks/openzh-covid-19.ipynb + streamable: false + type: File + input_18: + default: + class: Directory + listing: [] + path: ../../data/atlas + streamable: false + type: Directory + input_19: + default: runs/openzh-covid-19.run.ipynb + streamable: false + type: string + input_2: + default: runs/Dashboard.run.ipynb + streamable: false + type: string + input_20: + default: save_figures + streamable: false + type: string + input_21: + default: 'True' + streamable: false + type: string + input_22: + default: data_path + streamable: false + type: string + input_23: + default: + class: Directory + listing: [] + path: ../../data/openzh-covid-19 + streamable: false + type: Directory + input_24: + default: figures_path + streamable: false + type: string + input_25: + default: figures + streamable: false + type: string + input_26: + default: atlas_path + streamable: false + type: string + input_3: + default: ts_folder + streamable: false + type: string + input_4: + default: + class: Directory + listing: [] + path: ../../data/covid-19_jhu-csse + streamable: false + type: Directory + input_5: + default: rates_folder + streamable: false + type: string + input_6: + default: + class: Directory + listing: [] + path: ../../data/covid-19_rates + streamable: false + type: Directory + input_7: + default: geodata_path + streamable: false + type: string + input_8: + default: + class: File + path: ../../data/geodata/geo_data.csv + streamable: false + type: File + input_9: + default: atlas_path + streamable: false + type: string +outputs: + output_0: + outputSource: step_3/output_0 + streamable: false + type: File + output_1: + outputSource: step_3/output_1 + streamable: false + type: Directory + output_2: + outputSource: step_2/output_0 + streamable: false + type: File + output_3: + outputSource: step_1/output_0 + streamable: false + type: File +requirements: [] +steps: + step_1: + in: + input_10: input_1 + input_11: input_2 + input_2: input_3 + input_3: input_4 + input_4: input_5 + input_5: input_6 + input_6: input_7 + input_7: input_8 + input_8: input_9 + input_9: input_10 + out: + - output_0 + run: edeae7a3f9bd41579941a5f9b0eaf2aa_papermill.cwl + step_2: + in: + input_1: input_11 + input_2: input_12 + input_3: input_13 + input_4: input_14 + input_5: input_15 + input_6: input_16 + out: + - output_0 + run: 2fba4568d8784fb99872b6c8a35f66b9_papermill.cwl + step_3: + in: + input_1: input_17 + input_10: input_18 + input_2: input_19 + input_3: input_20 + input_4: input_21 + input_5: input_22 + input_6: input_23 + input_7: input_24 + input_8: input_25 + input_9: input_26 + out: + - output_0 + - output_1 + run: d03bdcf1bad440d7ad5010cd182358d1_papermill.cwl diff --git a/figures/switzerland-cases-by-canton.html 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[], "source": [ "# Parameters\n", - "PAPERMILL_INPUT_PATH = \"/tmp/9y8cpqtj/notebooks/Dashboard.ipynb\"\n", + "PAPERMILL_INPUT_PATH = \"/tmp/jipc4njv/notebooks/Dashboard.ipynb\"\n", "PAPERMILL_OUTPUT_PATH = \"runs/Dashboard.run.ipynb\"\n", - "ts_folder = \"/tmp/9y8cpqtj/data/covid-19_jhu-csse\"\n", - "rates_folder = \"/tmp/9y8cpqtj/data/covid-19_rates\"\n", - "geodata_path = \"/tmp/9y8cpqtj/data/geodata/geo_data.csv\"\n", - "atlas_path = \"/tmp/9y8cpqtj/data/atlas\"\n" + "ts_folder = \"/tmp/jipc4njv/data/covid-19_jhu-csse\"\n", + "rates_folder = \"/tmp/jipc4njv/data/covid-19_rates\"\n", + "geodata_path = \"/tmp/jipc4njv/data/geodata/geo_data.csv\"\n", + "atlas_path = \"/tmp/jipc4njv/data/atlas\"\n" ] }, { @@ -113,10 +113,10 @@ "source_hidden": true }, "papermill": { - "duration": 1.67308, - "end_time": "2020-04-28T21:22:45.508535", + "duration": 1.429818, + "end_time": "2020-04-29T07:34:58.226660", "exception": false, - "start_time": "2020-04-28T21:22:43.835455", + "start_time": 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