diff --git a/.renku/activity_index.yaml b/.renku/activity_index.yaml index 559089d0a7159f75cd068b7d431f5e673476af6d..7ae97dd949e7351eb9d97568fe6775b6cad9a035 100644 --- a/.renku/activity_index.yaml +++ b/.renku/activity_index.yaml @@ -193,6 +193,8 @@ data/covidtracking: - .renku/workflow/56d135852acb407d89d0f097543acbdd_migrated.yaml 487ddcbff2122ea0731d7030a53a30e1f8253c64: - .renku/workflow/d5f69f348e92403189337f8e3dde3d96_migrated.yaml + 497f9df1194c0c5a07e6b1bdbaa66a96a4dd3549: + - .renku/workflow/f3e43a91e1304201b79358454d22d983_migrated.yaml 4d58c6eb9619b341ad4e12a054c43f3f75b18358: - .renku/workflow/ef17607a5086476b986ed0147df884fa_migrated.yaml 4e022f79115a23ca203eed3926e6ee9fbe1e0c21: @@ -545,6 +547,8 @@ data/covidtracking/states-daily.json: - .renku/workflow/56d135852acb407d89d0f097543acbdd_migrated.yaml 487ddcbff2122ea0731d7030a53a30e1f8253c64: - .renku/workflow/d5f69f348e92403189337f8e3dde3d96_migrated.yaml + 497f9df1194c0c5a07e6b1bdbaa66a96a4dd3549: + - .renku/workflow/f3e43a91e1304201b79358454d22d983_migrated.yaml 4d58c6eb9619b341ad4e12a054c43f3f75b18358: - .renku/workflow/ef17607a5086476b986ed0147df884fa_migrated.yaml 4e022f79115a23ca203eed3926e6ee9fbe1e0c21: @@ -890,6 +894,8 @@ data/covidtracking/states-metadata.json: - .renku/workflow/db21913cec114a52ad19fab1b37aa483_migrated.yaml 487ddcbff2122ea0731d7030a53a30e1f8253c64: - .renku/workflow/d5f69f348e92403189337f8e3dde3d96_migrated.yaml + 497f9df1194c0c5a07e6b1bdbaa66a96a4dd3549: + - .renku/workflow/f3e43a91e1304201b79358454d22d983_migrated.yaml 4d58c6eb9619b341ad4e12a054c43f3f75b18358: - .renku/workflow/ef17607a5086476b986ed0147df884fa_migrated.yaml 4e022f79115a23ca203eed3926e6ee9fbe1e0c21: @@ -2112,6 +2118,8 @@ runs/download-covidtracking-data.runs.ipynb: - .renku/workflow/56d135852acb407d89d0f097543acbdd_migrated.yaml 487ddcbff2122ea0731d7030a53a30e1f8253c64: - .renku/workflow/d5f69f348e92403189337f8e3dde3d96_migrated.yaml + 497f9df1194c0c5a07e6b1bdbaa66a96a4dd3549: + - .renku/workflow/f3e43a91e1304201b79358454d22d983_migrated.yaml 4d58c6eb9619b341ad4e12a054c43f3f75b18358: - .renku/workflow/ef17607a5086476b986ed0147df884fa_migrated.yaml 4e022f79115a23ca203eed3926e6ee9fbe1e0c21: diff --git a/.renku/workflow/a284096f6ad445dea29235cc8380d1bd.cwl b/.renku/workflow/a284096f6ad445dea29235cc8380d1bd.cwl deleted file mode 100644 index 3e1c0278af0680e92eb03adcd381585981dd97c6..0000000000000000000000000000000000000000 --- a/.renku/workflow/a284096f6ad445dea29235cc8380d1bd.cwl +++ /dev/null @@ -1,120 +0,0 @@ -class: Workflow -cwlVersion: v1.0 -hints: [] -inputs: - input_1: - default: states-metadata.json - streamable: false - type: string - input_2: - default: states-daily.json - streamable: false - type: string - input_3: - default: out_folder - streamable: false - type: string - input_4: - default: data/covidtracking - streamable: false - type: string - input_5: - default: - class: File - path: ../../notebooks/process/download-covidtracking-data.ipynb - streamable: false - type: File - input_6: - default: runs/download-covidtracking-data.runs.ipynb - streamable: false - type: string -outputs: - output_1: - outputSource: step_3/output_0 - streamable: false - type: File - output_3: - outputSource: step_3/output_1 - streamable: false - type: Directory -requirements: [] -steps: - step_1: - in: - filename: input_1 - input_directory: step_3/output_1 - out: - - output_file - run: - arguments: [] - baseCommand: - - 'true' - class: CommandLineTool - cwlVersion: v1.0 - hints: [] - inputs: - filename: - default: states-metadata.json - streamable: false - type: string - input_directory: - streamable: false - type: Directory - outputs: - output_file: - outputBinding: - glob: $(inputs.filename) - streamable: false - type: File - permanentFailCodes: [] - requirements: - - &id001 - class: InlineJavascriptRequirement - - &id002 - class: InitialWorkDirRequirement - listing: $(inputs.input_directory.listing) - successCodes: [] - temporaryFailCodes: [] - step_2: - in: - filename: input_2 - input_directory: step_3/output_1 - out: - - output_file - run: - arguments: [] - baseCommand: - - 'true' - class: CommandLineTool - cwlVersion: v1.0 - hints: [] - inputs: - filename: - default: states-daily.json - streamable: false - type: string - input_directory: - streamable: false - type: Directory - outputs: - output_file: - outputBinding: - glob: $(inputs.filename) - streamable: false - type: File - permanentFailCodes: [] - requirements: - - *id001 - - *id002 - successCodes: [] - temporaryFailCodes: [] - step_3: - in: - input_1: input_3 - input_2: input_4 - input_3: input_5 - input_4: input_6 - out: - - output_0 - - output_1 - run: a17d560c41a54f5aa307ce5f3c5effe5_papermill.cwl diff --git a/.renku/workflow/f3e43a91e1304201b79358454d22d983_migrated.yaml b/.renku/workflow/f3e43a91e1304201b79358454d22d983_migrated.yaml new file mode 100644 index 0000000000000000000000000000000000000000..9d4ab7447e2e4f65a2e52863d63749566da84a53 --- /dev/null +++ b/.renku/workflow/f3e43a91e1304201b79358454d22d983_migrated.yaml @@ -0,0 +1,434 @@ +- '@id': https://github.com/swissdatasciencecenter/renku-python/tree/v0.10.4 + '@type': + - http://purl.org/wf4ever/wfprov#WorkflowEngine + - http://www.w3.org/ns/prov#SoftwareAgent + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': renku 0.10.4 +- '@id': https://github.com/swissdatasciencecenter/renku-python/tree/v0.15.1 + '@type': + - http://purl.org/wf4ever/wfprov#WorkflowEngine + - http://www.w3.org/ns/prov#SoftwareAgent + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': renku 0.15.1 +- '@id': https://localhost/activities/commit/497f9df1194c0c5a07e6b1bdbaa66a96a4dd3549 + '@type': + - http://purl.org/wf4ever/wfprov#ProcessRun + - http://purl.org/wf4ever/wfprov#WorkflowRun + - http://www.w3.org/ns/prov#Activity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#comment: + - '@value': renku rerun data/covidtracking/states-metadata.json data/covidtracking/states-daily.json + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': .renku/workflow/f3e43a91e1304201b79358454d22d983_migrated.yaml@497f9df1194c0c5a07e6b1bdbaa66a96a4dd3549 + http://www.w3.org/ns/prov#atLocation: + - '@value': .renku/workflow/f3e43a91e1304201b79358454d22d983_migrated.yaml + http://www.w3.org/ns/prov#endedAtTime: + - '@type': http://www.w3.org/2001/XMLSchema#dateTime + '@value': '2020-09-25T07:34:47+00:00' + http://www.w3.org/ns/prov#influenced: [] + http://www.w3.org/ns/prov#qualifiedAssociation: + - '@id': https://localhost/activities/commit/497f9df1194c0c5a07e6b1bdbaa66a96a4dd3549/association + http://www.w3.org/ns/prov#qualifiedUsage: + - '@id': https://localhost/activities/commit/497f9df1194c0c5a07e6b1bdbaa66a96a4dd3549/inputs/1 + http://www.w3.org/ns/prov#startedAtTime: + - '@type': http://www.w3.org/2001/XMLSchema#dateTime + '@value': '2020-09-25T07:34:47+00:00' + http://www.w3.org/ns/prov#wasAssociatedWith: + - '@id': mailto:beepbop@example.com + - '@id': https://github.com/swissdatasciencecenter/renku-python/tree/v0.15.1 + http://www.w3.org/ns/prov#wasInformedBy: + - '@id': https://localhost/activities/commit/36f83e47d6067e830f3ece1cbc22c2b013b27a89 +- '@id': https://localhost/activities/commit/497f9df1194c0c5a07e6b1bdbaa66a96a4dd3549/association + '@type': + - http://www.w3.org/ns/prov#Association + http://www.w3.org/ns/prov#agent: + - '@id': https://github.com/swissdatasciencecenter/renku-python/tree/v0.10.4 + http://www.w3.org/ns/prov#hadPlan: + - '@id': https://renkulab.io/runs/67d6c2205081f2e038d23e3b3cc57a2d9f96389b +- '@id': https://localhost/activities/commit/497f9df1194c0c5a07e6b1bdbaa66a96a4dd3549/inputs/1 + '@type': + - http://www.w3.org/ns/prov#Usage + http://www.w3.org/ns/prov#entity: + - '@id': https://renkulab.io/blob/d754df040a4bf8f7cb7ae6ed4151830f9bb0f520/notebooks/process/download-covidtracking-data.ipynb + http://www.w3.org/ns/prov#hadRole: + - '@value': steps/step_1/inputs/3 +- '@id': https://localhost/activities/commit/497f9df1194c0c5a07e6b1bdbaa66a96a4dd3549/steps/step_1 + '@type': + - http://purl.org/wf4ever/wfprov#ProcessRun + - http://www.w3.org/ns/prov#Activity + http://purl.org/wf4ever/wfprov#wasPartOfWorkflowRun: + - '@id': https://localhost/activities/commit/497f9df1194c0c5a07e6b1bdbaa66a96a4dd3549 + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#comment: + - '@value': renku rerun data/covidtracking/states-metadata.json data/covidtracking/states-daily.json + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': .renku/workflow/f3e43a91e1304201b79358454d22d983_migrated.yaml@497f9df1194c0c5a07e6b1bdbaa66a96a4dd3549 + http://www.w3.org/ns/prov#atLocation: + - '@value': .renku/workflow/f3e43a91e1304201b79358454d22d983_migrated.yaml + http://www.w3.org/ns/prov#endedAtTime: + - '@type': http://www.w3.org/2001/XMLSchema#dateTime + '@value': '2020-09-25T07:34:47+00:00' + http://www.w3.org/ns/prov#influenced: [] + http://www.w3.org/ns/prov#qualifiedAssociation: + - '@id': https://localhost/activities/commit/497f9df1194c0c5a07e6b1bdbaa66a96a4dd3549/steps/step_1/association + http://www.w3.org/ns/prov#qualifiedUsage: + - '@id': https://localhost/activities/commit/497f9df1194c0c5a07e6b1bdbaa66a96a4dd3549/steps/step_1/inputs/3 + http://www.w3.org/ns/prov#startedAtTime: + - '@type': http://www.w3.org/2001/XMLSchema#dateTime + '@value': '2020-09-25T07:34:47+00:00' + http://www.w3.org/ns/prov#wasAssociatedWith: + - '@id': mailto:beepbop@example.com + - '@id': https://github.com/swissdatasciencecenter/renku-python/tree/v0.15.1 + http://www.w3.org/ns/prov#wasInformedBy: + - '@id': https://localhost/activities/commit/36f83e47d6067e830f3ece1cbc22c2b013b27a89 + https://swissdatasciencecenter.github.io/renku-ontology#hasRunParameter: [] +- '@id': https://localhost/activities/commit/497f9df1194c0c5a07e6b1bdbaa66a96a4dd3549/steps/step_1/association + '@type': + - http://www.w3.org/ns/prov#Association + http://www.w3.org/ns/prov#agent: + - '@id': https://github.com/swissdatasciencecenter/renku-python/tree/v0.10.4 + http://www.w3.org/ns/prov#hadPlan: + - '@id': https://renkulab.io/runs/766ad29650872ca4e5a0b4c1d37f5b7ea8761623 +- '@id': https://localhost/activities/commit/497f9df1194c0c5a07e6b1bdbaa66a96a4dd3549/steps/step_1/inputs/3 + '@type': + - http://www.w3.org/ns/prov#Usage + http://www.w3.org/ns/prov#entity: + - '@id': https://renkulab.io/blob/d754df040a4bf8f7cb7ae6ed4151830f9bb0f520/notebooks/process/download-covidtracking-data.ipynb + http://www.w3.org/ns/prov#hadRole: + - '@value': inputs/3 +- '@id': https://localhost/activities/commit/497f9df1194c0c5a07e6b1bdbaa66a96a4dd3549/steps/step_1/outputs/2 + '@type': + - http://www.w3.org/ns/prov#Generation + http://www.w3.org/ns/prov#activity: + - '@id': https://localhost/activities/commit/497f9df1194c0c5a07e6b1bdbaa66a96a4dd3549/steps/step_1 + - '@id': https://localhost/activities/commit/497f9df1194c0c5a07e6b1bdbaa66a96a4dd3549 + http://www.w3.org/ns/prov#hadRole: + - '@value': outputs/2 +- '@id': https://localhost/activities/commit/497f9df1194c0c5a07e6b1bdbaa66a96a4dd3549/steps/step_1/outputs/4 + '@type': + - http://www.w3.org/ns/prov#Generation + http://www.w3.org/ns/prov#activity: + - '@id': https://localhost/activities/commit/497f9df1194c0c5a07e6b1bdbaa66a96a4dd3549/steps/step_1 + - '@id': https://localhost/activities/commit/497f9df1194c0c5a07e6b1bdbaa66a96a4dd3549 + http://www.w3.org/ns/prov#hadRole: + - '@value': outputs/4 +- '@id': https://localhost/activities/commit/497f9df1194c0c5a07e6b1bdbaa66a96a4dd3549/steps/step_1/tree/data/covidtracking/states-daily.json + '@type': + - http://www.w3.org/ns/prov#Generation + http://www.w3.org/ns/prov#activity: + - '@id': https://localhost/activities/commit/497f9df1194c0c5a07e6b1bdbaa66a96a4dd3549 +- '@id': https://localhost/activities/commit/497f9df1194c0c5a07e6b1bdbaa66a96a4dd3549/steps/step_1/tree/data/covidtracking/states-metadata.json + '@type': + - http://www.w3.org/ns/prov#Generation + http://www.w3.org/ns/prov#activity: + - '@id': https://localhost/activities/commit/497f9df1194c0c5a07e6b1bdbaa66a96a4dd3549 +- '@id': https://renkulab.io/blob/497f9df1194c0c5a07e6b1bdbaa66a96a4dd3549/data/covidtracking + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Collection + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': data/covidtracking@497f9df1194c0c5a07e6b1bdbaa66a96a4dd3549 + http://www.w3.org/ns/prov#atLocation: + - '@value': data/covidtracking + http://www.w3.org/ns/prov#hadMember: + - '@id': https://renkulab.io/blob/497f9df1194c0c5a07e6b1bdbaa66a96a4dd3549/data/covidtracking/states-daily.json + - '@id': https://renkulab.io/blob/497f9df1194c0c5a07e6b1bdbaa66a96a4dd3549/data/covidtracking/states-metadata.json + http://www.w3.org/ns/prov#qualifiedGeneration: + - '@id': https://localhost/activities/commit/497f9df1194c0c5a07e6b1bdbaa66a96a4dd3549/steps/step_1/outputs/2 +- '@id': https://renkulab.io/blob/497f9df1194c0c5a07e6b1bdbaa66a96a4dd3549/data/covidtracking/states-daily.json + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': data/covidtracking/states-daily.json@497f9df1194c0c5a07e6b1bdbaa66a96a4dd3549 + http://www.w3.org/ns/prov#atLocation: + - '@value': data/covidtracking/states-daily.json + http://www.w3.org/ns/prov#qualifiedGeneration: + - '@id': https://localhost/activities/commit/497f9df1194c0c5a07e6b1bdbaa66a96a4dd3549/steps/step_1/tree/data/covidtracking/states-daily.json +- '@id': https://renkulab.io/blob/497f9df1194c0c5a07e6b1bdbaa66a96a4dd3549/data/covidtracking/states-metadata.json + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': data/covidtracking/states-metadata.json@497f9df1194c0c5a07e6b1bdbaa66a96a4dd3549 + http://www.w3.org/ns/prov#atLocation: + - '@value': data/covidtracking/states-metadata.json + http://www.w3.org/ns/prov#qualifiedGeneration: + - '@id': https://localhost/activities/commit/497f9df1194c0c5a07e6b1bdbaa66a96a4dd3549/steps/step_1/tree/data/covidtracking/states-metadata.json +- '@id': https://renkulab.io/blob/497f9df1194c0c5a07e6b1bdbaa66a96a4dd3549/runs/download-covidtracking-data.runs.ipynb + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': runs/download-covidtracking-data.runs.ipynb@497f9df1194c0c5a07e6b1bdbaa66a96a4dd3549 + http://www.w3.org/ns/prov#atLocation: + - '@value': runs/download-covidtracking-data.runs.ipynb + http://www.w3.org/ns/prov#qualifiedGeneration: + - '@id': https://localhost/activities/commit/497f9df1194c0c5a07e6b1bdbaa66a96a4dd3549/steps/step_1/outputs/4 +- '@id': https://renkulab.io/blob/ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658/data/covidtracking + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Collection + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': data/covidtracking@ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658 + http://www.w3.org/ns/prov#atLocation: + - '@value': data/covidtracking + http://www.w3.org/ns/prov#hadMember: + - '@id': https://renkulab.io/blob/ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658/data/covidtracking/states-daily.json + - '@id': https://renkulab.io/blob/ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658/data/covidtracking/states-metadata.json +- '@id': https://renkulab.io/blob/ccc37edffe6d9ca8ea4b8a229d1d20c42bc4b658/data/covidtracking/states-daily.json + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/covid-19/covid-19-public-data + http://www.w3.org/2000/01/rdf-schema#label: + - 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