From 22e6f61a591f7cfd43d3f74b8ab272f189b6f760 Mon Sep 17 00:00:00 2001
From: "CR (covid cron)" <cramakri+covid-cron@ethz.ch>
Date: Mon, 20 Apr 2020 09:52:07 +0000
Subject: [PATCH] renku update --with-siblings

---
 .../6ad51de9df5144609b401bd5931723e8.cwl      | 245 ++++++++++++++++++
 figures/switzerland-cases-by-canton.html      |   2 +-
 figures/switzerland-deaths-by-canton.html     |   2 +-
 runs/Dashboard.run.ipynb                      | 168 ++++++------
 runs/covid-19-ecdc.run.ipynb                  | 112 ++++----
 runs/covidtracking.run.ipynb                  | 156 +++++------
 runs/openzh-covid-19.run.ipynb                | 112 ++++----
 7 files changed, 521 insertions(+), 276 deletions(-)
 create mode 100644 .renku/workflow/6ad51de9df5144609b401bd5931723e8.cwl

diff --git a/.renku/workflow/6ad51de9df5144609b401bd5931723e8.cwl b/.renku/workflow/6ad51de9df5144609b401bd5931723e8.cwl
new file mode 100644
index 000000000..6fcaf3b7b
--- /dev/null
+++ b/.renku/workflow/6ad51de9df5144609b401bd5931723e8.cwl
@@ -0,0 +1,245 @@
+class: Workflow
+cwlVersion: v1.0
+hints: []
+inputs:
+  input_1:
+    default:
+      class: File
+      path: ../../notebooks/covid-19-ecdc.ipynb
+    streamable: false
+    type: File
+  input_10:
+    default:
+      class: Directory
+      listing: []
+      path: ../../data/covidtracking
+    streamable: false
+    type: Directory
+  input_11:
+    default: atlas_path
+    streamable: false
+    type: string
+  input_12:
+    default:
+      class: Directory
+      listing: []
+      path: ../../data/atlas
+    streamable: false
+    type: Directory
+  input_13:
+    default:
+      class: File
+      path: ../../notebooks/Dashboard.ipynb
+    streamable: false
+    type: File
+  input_14:
+    default: runs/Dashboard.run.ipynb
+    streamable: false
+    type: string
+  input_15:
+    default: ts_folder
+    streamable: false
+    type: string
+  input_16:
+    default:
+      class: Directory
+      listing: []
+      path: ../../data/covid-19_jhu-csse
+    streamable: false
+    type: Directory
+  input_17:
+    default: rates_folder
+    streamable: false
+    type: string
+  input_18:
+    default:
+      class: Directory
+      listing: []
+      path: ../../data/covid-19_rates
+    streamable: false
+    type: Directory
+  input_19:
+    default: geodata_path
+    streamable: false
+    type: string
+  input_2:
+    default: runs/covid-19-ecdc.run.ipynb
+    streamable: false
+    type: string
+  input_20:
+    default:
+      class: File
+      path: ../../data/geodata/geo_data.csv
+    streamable: false
+    type: File
+  input_21:
+    default: atlas_path
+    streamable: false
+    type: string
+  input_22:
+    default:
+      class: Directory
+      listing: []
+      path: ../../data/atlas
+    streamable: false
+    type: Directory
+  input_23:
+    default:
+      class: File
+      path: ../../notebooks/openzh-covid-19.ipynb
+    streamable: false
+    type: File
+  input_24:
+    default:
+      class: Directory
+      listing: []
+      path: ../../data/atlas
+    streamable: false
+    type: Directory
+  input_25:
+    default: runs/openzh-covid-19.run.ipynb
+    streamable: false
+    type: string
+  input_26:
+    default: save_figures
+    streamable: false
+    type: string
+  input_27:
+    default: 'True'
+    streamable: false
+    type: string
+  input_28:
+    default: data_path
+    streamable: false
+    type: string
+  input_29:
+    default:
+      class: Directory
+      listing: []
+      path: ../../data/openzh-covid-19
+    streamable: false
+    type: Directory
+  input_3:
+    default: data_path
+    streamable: false
+    type: string
+  input_30:
+    default: figures_path
+    streamable: false
+    type: string
+  input_31:
+    default: figures
+    streamable: false
+    type: string
+  input_32:
+    default: atlas_path
+    streamable: false
+    type: string
+  input_4:
+    default:
+      class: Directory
+      listing: []
+      path: ../../data/covid-19-ecdc
+    streamable: false
+    type: Directory
+  input_5:
+    default: atlas_path
+    streamable: false
+    type: string
+  input_6:
+    default:
+      class: Directory
+      listing: []
+      path: ../../data/atlas
+    streamable: false
+    type: Directory
+  input_7:
+    default:
+      class: File
+      path: ../../notebooks/covidtracking.ipynb
+    streamable: false
+    type: File
+  input_8:
+    default: runs/covidtracking.run.ipynb
+    streamable: false
+    type: string
+  input_9:
+    default: data_path
+    streamable: false
+    type: string
+outputs:
+  output_0:
+    outputSource: step_4/output_0
+    streamable: false
+    type: File
+  output_1:
+    outputSource: step_2/output_0
+    streamable: false
+    type: File
+  output_2:
+    outputSource: step_3/output_0
+    streamable: false
+    type: File
+  output_3:
+    outputSource: step_4/output_1
+    streamable: false
+    type: Directory
+  output_4:
+    outputSource: step_1/output_0
+    streamable: false
+    type: File
+requirements: []
+steps:
+  step_1:
+    in:
+      input_1: input_1
+      input_2: input_2
+      input_3: input_3
+      input_4: input_4
+      input_5: input_5
+      input_6: input_6
+    out:
+    - output_0
+    run: e64b3ddf5a5d4949a231ca0ba62378d8_papermill.cwl
+  step_2:
+    in:
+      input_1: input_7
+      input_2: input_8
+      input_3: input_9
+      input_4: input_10
+      input_5: input_11
+      input_6: input_12
+    out:
+    - output_0
+    run: 2fba4568d8784fb99872b6c8a35f66b9_papermill.cwl
+  step_3:
+    in:
+      input_10: input_13
+      input_11: input_14
+      input_2: input_15
+      input_3: input_16
+      input_4: input_17
+      input_5: input_18
+      input_6: input_19
+      input_7: input_20
+      input_8: input_21
+      input_9: input_22
+    out:
+    - output_0
+    run: edeae7a3f9bd41579941a5f9b0eaf2aa_papermill.cwl
+  step_4:
+    in:
+      input_1: input_23
+      input_10: input_24
+      input_2: input_25
+      input_3: input_26
+      input_4: input_27
+      input_5: input_28
+      input_6: input_29
+      input_7: input_30
+      input_8: input_31
+      input_9: input_32
+    out:
+    - output_0
+    - output_1
+    run: d03bdcf1bad440d7ad5010cd182358d1_papermill.cwl
diff --git a/figures/switzerland-cases-by-canton.html b/figures/switzerland-cases-by-canton.html
index a2a883fe9..c973ecc8f 100644
--- a/figures/switzerland-cases-by-canton.html
+++ b/figures/switzerland-cases-by-canton.html
@@ -14,7 +14,7 @@
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diff --git a/runs/Dashboard.run.ipynb b/runs/Dashboard.run.ipynb
index 1194a40b8..f2698d3f6 100644
--- a/runs/Dashboard.run.ipynb
+++ b/runs/Dashboard.run.ipynb
@@ -8,10 +8,10 @@
      "source_hidden": true
     },
     "papermill": {
-     "duration": 0.051877,
-     "end_time": "2020-04-19T20:00:46.795170",
+     "duration": 0.048949,
+     "end_time": "2020-04-20T09:51:56.315681",
      "exception": false,
-     "start_time": "2020-04-19T20:00:46.743293",
+     "start_time": "2020-04-20T09:51:56.266732",
      "status": "completed"
     },
     "tags": []
@@ -30,10 +30,10 @@
      "source_hidden": true
     },
     "papermill": {
-     "duration": 0.484134,
-     "end_time": "2020-04-19T20:00:47.298291",
+     "duration": 0.539708,
+     "end_time": "2020-04-20T09:51:56.871398",
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-     "start_time": "2020-04-19T20:00:46.814157",
+     "start_time": "2020-04-20T09:51:56.331690",
      "status": "completed"
     },
     "tags": []
@@ -56,10 +56,10 @@
      "source_hidden": true
     },
     "papermill": {
-     "duration": 0.037138,
-     "end_time": "2020-04-19T20:00:47.351287",
+     "duration": 0.03341,
+     "end_time": "2020-04-20T09:51:56.917165",
      "exception": false,
-     "start_time": "2020-04-19T20:00:47.314149",
+     "start_time": "2020-04-20T09:51:56.883755",
      "status": "completed"
     },
     "tags": [
@@ -84,10 +84,10 @@
      "source_hidden": true
     },
     "papermill": {
-     "duration": 0.035416,
-     "end_time": "2020-04-19T20:00:47.400830",
+     "duration": 0.032358,
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      "exception": false,
-     "start_time": "2020-04-19T20:00:47.365414",
+     "start_time": "2020-04-20T09:51:56.928952",
      "status": "completed"
     },
     "tags": [
@@ -97,12 +97,12 @@
    "outputs": [],
    "source": [
     "# Parameters\n",
-    "PAPERMILL_INPUT_PATH = \"/tmp/084xq9sx/notebooks/Dashboard.ipynb\"\n",
+    "PAPERMILL_INPUT_PATH = \"/tmp/um3oek6w/notebooks/Dashboard.ipynb\"\n",
     "PAPERMILL_OUTPUT_PATH = \"runs/Dashboard.run.ipynb\"\n",
-    "ts_folder = \"/tmp/084xq9sx/data/covid-19_jhu-csse\"\n",
-    "rates_folder = \"/tmp/084xq9sx/data/covid-19_rates\"\n",
-    "geodata_path = \"/tmp/084xq9sx/data/geodata/geo_data.csv\"\n",
-    "atlas_path = \"/tmp/084xq9sx/data/atlas\"\n"
+    "ts_folder = \"/tmp/um3oek6w/data/covid-19_jhu-csse\"\n",
+    "rates_folder = \"/tmp/um3oek6w/data/covid-19_rates\"\n",
+    "geodata_path = \"/tmp/um3oek6w/data/geodata/geo_data.csv\"\n",
+    "atlas_path = \"/tmp/um3oek6w/data/atlas\"\n"
    ]
   },
   {
@@ -113,10 +113,10 @@
      "source_hidden": true
     },
     "papermill": {
-     "duration": 1.647745,
-     "end_time": "2020-04-19T20:00:49.064960",
+     "duration": 1.67788,
+     "end_time": "2020-04-20T09:51:58.650874",
      "exception": false,
-     "start_time": "2020-04-19T20:00:47.417215",
+     "start_time": "2020-04-20T09:51:56.972994",
      "status": "completed"
     },
     "tags": []
@@ -147,10 +147,10 @@
      "source_hidden": true
     },
     "papermill": {
-     "duration": 0.052153,
-     "end_time": "2020-04-19T20:00:49.135617",
+     "duration": 0.055635,
+     "end_time": "2020-04-20T09:51:58.725777",
      "exception": false,
-     "start_time": "2020-04-19T20:00:49.083464",
+     "start_time": "2020-04-20T09:51:58.670142",
      "status": "completed"
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@@ -172,10 +172,10 @@
    "cell_type": "markdown",
    "metadata": {
     "papermill": {
-     "duration": 0.011717,
-     "end_time": "2020-04-19T20:00:49.164446",
+     "duration": 0.012017,
+     "end_time": "2020-04-20T09:51:58.753767",
      "exception": false,
-     "start_time": "2020-04-19T20:00:49.152729",
+     "start_time": "2020-04-20T09:51:58.741750",
      "status": "completed"
     },
     "tags": []
@@ -196,10 +196,10 @@
      "source_hidden": true
     },
     "papermill": {
-     "duration": 0.05203,
-     "end_time": "2020-04-19T20:00:49.228268",
+     "duration": 0.051899,
+     "end_time": "2020-04-20T09:51:58.817729",
      "exception": false,
-     "start_time": "2020-04-19T20:00:49.176238",
+     "start_time": "2020-04-20T09:51:58.765830",
      "status": "completed"
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     "tags": []
@@ -208,7 +208,7 @@
     {
      "data": {
       "text/html": [
-       "<em>Data up to Apr 18 2020; countries with 500 or more confirmed cases.</em>"
+       "<em>Data up to Apr 19 2020; countries with 500 or more confirmed cases.</em>"
       ],
       "text/plain": [
        "<IPython.core.display.HTML object>"
@@ -227,10 +227,10 @@
    "cell_type": "markdown",
    "metadata": {
     "papermill": {
-     "duration": 0.01223,
-     "end_time": "2020-04-19T20:00:49.257085",
+     "duration": 0.012701,
+     "end_time": "2020-04-20T09:51:58.847156",
      "exception": false,
-     "start_time": "2020-04-19T20:00:49.244855",
+     "start_time": "2020-04-20T09:51:58.834455",
      "status": "completed"
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@@ -247,10 +247,10 @@
      "source_hidden": true
     },
     "papermill": {
-     "duration": 0.045393,
-     "end_time": "2020-04-19T20:00:49.314836",
+     "duration": 0.048785,
+     "end_time": "2020-04-20T09:51:58.908724",
      "exception": false,
-     "start_time": "2020-04-19T20:00:49.269443",
+     "start_time": "2020-04-20T09:51:58.859939",
      "status": "completed"
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@@ -268,10 +268,10 @@
      "source_hidden": true
     },
     "papermill": {
-     "duration": 0.038926,
-     "end_time": "2020-04-19T20:00:49.371435",
+     "duration": 0.045365,
+     "end_time": "2020-04-20T09:51:58.971480",
      "exception": false,
-     "start_time": "2020-04-19T20:00:49.332509",
+     "start_time": "2020-04-20T09:51:58.926115",
      "status": "completed"
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     "tags": []
@@ -289,10 +289,10 @@
      "source_hidden": true
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     "papermill": {
-     "duration": 0.135055,
-     "end_time": "2020-04-19T20:00:49.523233",
+     "duration": 0.159874,
+     "end_time": "2020-04-20T09:51:59.146280",
      "exception": false,
-     "start_time": "2020-04-19T20:00:49.388178",
+     "start_time": "2020-04-20T09:51:58.986406",
      "status": "completed"
     },
     "tags": []
@@ -302,10 +302,10 @@
      "data": {
       "text/html": [
        "\n",
-       "<div id=\"altair-viz-b4ff427d775b427b989b4b794aab7ac0\"></div>\n",
+       "<div id=\"altair-viz-f916548611754b4087bb8dd37a104933\"></div>\n",
        "<script type=\"text/javascript\">\n",
        "  (function(spec, embedOpt){\n",
-       "    const outputDiv = document.getElementById(\"altair-viz-b4ff427d775b427b989b4b794aab7ac0\");\n",
+       "    const outputDiv = document.getElementById(\"altair-viz-f916548611754b4087bb8dd37a104933\");\n",
        "    const paths = {\n",
        "      \"vega\": \"https://cdn.jsdelivr.net/npm//vega@5?noext\",\n",
        "      \"vega-lib\": \"https://cdn.jsdelivr.net/npm//vega-lib?noext\",\n",
@@ -346,7 +346,7 @@
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        "    }\n",
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@@ -942,21 +942,21 @@
    "version": "3.7.3"
   },
   "papermill": {
-   "duration": 6.606042,
-   "end_time": "2020-04-19T20:00:52.511902",
+   "duration": 6.787767,
+   "end_time": "2020-04-20T09:52:02.216075",
    "environment_variables": {},
    "exception": null,
-   "input_path": "/tmp/084xq9sx/notebooks/Dashboard.ipynb",
+   "input_path": "/tmp/um3oek6w/notebooks/Dashboard.ipynb",
    "output_path": "runs/Dashboard.run.ipynb",
    "parameters": {
-    "PAPERMILL_INPUT_PATH": "/tmp/084xq9sx/notebooks/Dashboard.ipynb",
+    "PAPERMILL_INPUT_PATH": "/tmp/um3oek6w/notebooks/Dashboard.ipynb",
     "PAPERMILL_OUTPUT_PATH": "runs/Dashboard.run.ipynb",
-    "atlas_path": "/tmp/084xq9sx/data/atlas",
-    "geodata_path": "/tmp/084xq9sx/data/geodata/geo_data.csv",
-    "rates_folder": "/tmp/084xq9sx/data/covid-19_rates",
-    "ts_folder": "/tmp/084xq9sx/data/covid-19_jhu-csse"
+    "atlas_path": "/tmp/um3oek6w/data/atlas",
+    "geodata_path": "/tmp/um3oek6w/data/geodata/geo_data.csv",
+    "rates_folder": "/tmp/um3oek6w/data/covid-19_rates",
+    "ts_folder": "/tmp/um3oek6w/data/covid-19_jhu-csse"
    },
-   "start_time": "2020-04-19T20:00:45.905860",
+   "start_time": "2020-04-20T09:51:55.428308",
    "version": "1.1.0"
   }
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diff --git a/runs/covid-19-ecdc.run.ipynb b/runs/covid-19-ecdc.run.ipynb
index c30b77bf6..4dc6d5f45 100644
--- a/runs/covid-19-ecdc.run.ipynb
+++ b/runs/covid-19-ecdc.run.ipynb
@@ -8,10 +8,10 @@
      "source_hidden": true
     },
     "papermill": {
-     "duration": 0.048655,
-     "end_time": "2020-04-19T20:00:54.464948",
+     "duration": 0.048336,
+     "end_time": "2020-04-20T09:51:52.441847",
      "exception": false,
-     "start_time": "2020-04-19T20:00:54.416293",
+     "start_time": "2020-04-20T09:51:52.393511",
      "status": "completed"
     },
     "tags": []
@@ -30,10 +30,10 @@
      "source_hidden": true
     },
     "papermill": {
-     "duration": 0.521412,
-     "end_time": "2020-04-19T20:00:54.999233",
+     "duration": 0.552686,
+     "end_time": "2020-04-20T09:51:53.008290",
      "exception": false,
-     "start_time": "2020-04-19T20:00:54.477821",
+     "start_time": "2020-04-20T09:51:52.455604",
      "status": "completed"
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     "tags": []
@@ -55,10 +55,10 @@
    "cell_type": "markdown",
    "metadata": {
     "papermill": {
-     "duration": 0.008935,
-     "end_time": "2020-04-19T20:00:55.022940",
+     "duration": 0.008982,
+     "end_time": "2020-04-20T09:51:53.033077",
      "exception": false,
-     "start_time": "2020-04-19T20:00:55.014005",
+     "start_time": "2020-04-20T09:51:53.024095",
      "status": "completed"
     },
     "tags": []
@@ -77,10 +77,10 @@
      "source_hidden": true
     },
     "papermill": {
-     "duration": 0.035936,
-     "end_time": "2020-04-19T20:00:55.068093",
+     "duration": 0.038089,
+     "end_time": "2020-04-20T09:51:53.080877",
      "exception": false,
-     "start_time": "2020-04-19T20:00:55.032157",
+     "start_time": "2020-04-20T09:51:53.042788",
      "status": "completed"
     },
     "tags": []
@@ -104,10 +104,10 @@
      "source_hidden": true
     },
     "papermill": {
-     "duration": 0.035427,
-     "end_time": "2020-04-19T20:00:55.119796",
+     "duration": 0.033332,
+     "end_time": "2020-04-20T09:51:53.126641",
      "exception": false,
-     "start_time": "2020-04-19T20:00:55.084369",
+     "start_time": "2020-04-20T09:51:53.093309",
      "status": "completed"
     },
     "tags": [
@@ -128,10 +128,10 @@
      "source_hidden": true
     },
     "papermill": {
-     "duration": 0.032898,
-     "end_time": "2020-04-19T20:00:55.165143",
+     "duration": 0.034026,
+     "end_time": "2020-04-20T09:51:53.172937",
      "exception": false,
-     "start_time": "2020-04-19T20:00:55.132245",
+     "start_time": "2020-04-20T09:51:53.138911",
      "status": "completed"
     },
     "tags": [
@@ -141,8 +141,8 @@
    "outputs": [],
    "source": [
     "# Parameters\n",
-    "data_path = \"/tmp/dd6gxpa1/data/covid-19-ecdc\"\n",
-    "atlas_path = \"/tmp/dd6gxpa1/data/atlas\"\n"
+    "data_path = \"/tmp/an0rzquz/data/covid-19-ecdc\"\n",
+    "atlas_path = \"/tmp/an0rzquz/data/atlas\"\n"
    ]
   },
   {
@@ -153,10 +153,10 @@
      "source_hidden": true
     },
     "papermill": {
-     "duration": 0.359639,
-     "end_time": "2020-04-19T20:00:55.538771",
+     "duration": 0.406464,
+     "end_time": "2020-04-20T09:51:53.593127",
      "exception": false,
-     "start_time": "2020-04-19T20:00:55.179132",
+     "start_time": "2020-04-20T09:51:53.186663",
      "status": "completed"
     },
     "tags": []
@@ -175,10 +175,10 @@
      "source_hidden": true
     },
     "papermill": {
-     "duration": 0.049482,
-     "end_time": "2020-04-19T20:00:55.599368",
+     "duration": 0.05214,
+     "end_time": "2020-04-20T09:51:53.661823",
      "exception": false,
-     "start_time": "2020-04-19T20:00:55.549886",
+     "start_time": "2020-04-20T09:51:53.609683",
      "status": "completed"
     },
     "tags": []
@@ -198,10 +198,10 @@
    "cell_type": "markdown",
    "metadata": {
     "papermill": {
-     "duration": 0.008868,
-     "end_time": "2020-04-19T20:00:55.621337",
+     "duration": 0.010135,
+     "end_time": "2020-04-20T09:51:53.682536",
      "exception": false,
-     "start_time": "2020-04-19T20:00:55.612469",
+     "start_time": "2020-04-20T09:51:53.672401",
      "status": "completed"
     },
     "tags": []
@@ -214,10 +214,10 @@
    "cell_type": "markdown",
    "metadata": {
     "papermill": {
-     "duration": 0.008896,
-     "end_time": "2020-04-19T20:00:55.639612",
+     "duration": 0.007964,
+     "end_time": "2020-04-20T09:51:53.699056",
      "exception": false,
-     "start_time": "2020-04-19T20:00:55.630716",
+     "start_time": "2020-04-20T09:51:53.691092",
      "status": "completed"
     },
     "tags": []
@@ -234,10 +234,10 @@
      "source_hidden": true
     },
     "papermill": {
-     "duration": 0.072655,
-     "end_time": "2020-04-19T20:00:55.721402",
+     "duration": 0.071323,
+     "end_time": "2020-04-20T09:51:53.778508",
      "exception": false,
-     "start_time": "2020-04-19T20:00:55.648747",
+     "start_time": "2020-04-20T09:51:53.707185",
      "status": "completed"
     },
     "tags": []
@@ -247,10 +247,10 @@
      "data": {
       "text/html": [
        "\n",
-       "<div id=\"altair-viz-5b7b786cd6154071bb21ab7ae59aab71\"></div>\n",
+       "<div id=\"altair-viz-2ddf8beba4984594989c6fbc2a61b9f1\"></div>\n",
        "<script type=\"text/javascript\">\n",
        "  (function(spec, embedOpt){\n",
-       "    const outputDiv = document.getElementById(\"altair-viz-5b7b786cd6154071bb21ab7ae59aab71\");\n",
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        "      \"vega-lib\": \"https://cdn.jsdelivr.net/npm//vega-lib?noext\",\n",
@@ -291,7 +291,7 @@
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\"admin2\": \"\", \"country_label\": \"United States of America\", \"country\": \"USA\", \"date\": \"2020-04-03T00:00:00\", \"deceased_100k\": 1.8501230168281357, \"deceased_daily\": 915, \"deceased\": 6053, \"positive_100k\": 75.05025698859747, \"positive_daily\": 28819, \"positive\": 245540, \"region_iso\": \"\", \"region_label\": \"\", \"tested_100k\": \"\", \"tested\": \"\"}, {\"admin2_label\": \"\", \"admin2\": \"\", \"country_label\": \"United States of America\", \"country\": \"USA\", \"date\": \"2020-04-04T00:00:00\", \"deceased_100k\": 2.1875649151559506, \"deceased_daily\": 1104, \"deceased\": 7157, \"positive_100k\": 84.96108448250995, \"positive_daily\": 32425, \"positive\": 277965, \"region_iso\": \"\", \"region_label\": \"\", \"tested_100k\": \"\", \"tested\": \"\"}, {\"admin2_label\": \"\", \"admin2\": \"\", \"country_label\": \"United States of America\", \"country\": \"USA\", \"date\": \"2020-04-05T00:00:00\", \"deceased_100k\": 2.598363747902855, \"deceased_daily\": 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\"deceased_100k\": 5.101363481060893, \"deceased_daily\": 1873, \"deceased\": 16690, \"positive_100k\": 142.44480090888263, \"positive_daily\": 33901, \"positive\": 466033, \"region_iso\": \"\", \"region_label\": \"\", \"tested_100k\": \"\", \"tested\": \"\"}, {\"admin2_label\": \"\", \"admin2\": \"\", \"country_label\": \"United States of America\", \"country\": \"USA\", \"date\": \"2020-04-11T00:00:00\", \"deceased_100k\": 5.739263156613564, \"deceased_daily\": 2087, \"deceased\": 18777, \"positive_100k\": 153.30376678016185, \"positive_daily\": 35527, \"positive\": 501560, \"region_iso\": \"\", \"region_label\": \"\", \"tested_100k\": \"\", \"tested\": \"\"}, {\"admin2_label\": \"\", \"admin2\": \"\", \"country_label\": \"United States of America\", \"country\": \"USA\", \"date\": \"2020-04-12T00:00:00\", \"deceased_100k\": 6.298915435452539, \"deceased_daily\": 1831, \"deceased\": 20608, \"positive_100k\": 161.98158646804683, \"positive_daily\": 28391, \"positive\": 529951, 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\"positive_daily\": 31667, \"positive\": 671331, \"region_iso\": \"\", \"region_label\": \"\", \"tested_100k\": \"\", \"tested\": \"\"}, {\"admin2_label\": \"\", \"admin2\": \"\", \"country_label\": \"United States of America\", \"country\": \"USA\", \"date\": \"2020-04-18T00:00:00\", \"deceased_100k\": 11.325699366520691, \"deceased_daily\": 3770, \"deceased\": 37054, \"positive_100k\": 214.61916041435836, \"positive_daily\": 30833, \"positive\": 702164, \"region_iso\": \"\", \"region_label\": \"\", \"tested_100k\": \"\", \"tested\": \"\"}, {\"admin2_label\": \"\", \"admin2\": \"\", \"country_label\": \"United States of America\", \"country\": \"USA\", \"date\": \"2020-04-19T00:00:00\", \"deceased_100k\": 11.892992992694989, \"deceased_daily\": 1856, \"deceased\": 38910, \"positive_100k\": 224.68189789329705, \"positive_daily\": 32922, \"positive\": 735086, \"region_iso\": \"\", \"region_label\": \"\", \"tested_100k\": \"\", \"tested\": \"\"}, {\"admin2_label\": \"\", \"admin2\": \"\", \"country_label\": \"United States of America\", \"country\": \"USA\", \"date\": \"2020-04-20T00:00:00\", \"deceased_100k\": 12.434611691822603, \"deceased_daily\": 1772, \"deceased\": 40682, \"positive_100k\": 232.2012893251472, \"positive_daily\": 24601, \"positive\": 759687, \"region_iso\": \"\", \"region_label\": \"\", \"tested_100k\": \"\", \"tested\": \"\"}]}}, {\"mode\": \"vega-lite\"});\n",
        "</script>"
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       "text/plain": [
@@ -465,10 +465,10 @@
      "source_hidden": true
     },
     "papermill": {
-     "duration": 0.024643,
-     "end_time": "2020-04-19T20:00:55.994113",
+     "duration": 0.025731,
+     "end_time": "2020-04-20T09:51:54.081227",
      "exception": false,
-     "start_time": "2020-04-19T20:00:55.969470",
+     "start_time": "2020-04-20T09:51:54.055496",
      "status": "completed"
     },
     "tags": []
@@ -501,17 +501,17 @@
   "name": "python",
   "npconvert_exporter": "python",
   "papermill": {
-   "duration": 2.747158,
-   "end_time": "2020-04-19T20:00:56.329840",
+   "duration": 2.865596,
+   "end_time": "2020-04-20T09:51:54.418523",
    "environment_variables": {},
    "exception": null,
-   "input_path": "/tmp/dd6gxpa1/notebooks/covid-19-ecdc.ipynb",
+   "input_path": "/tmp/an0rzquz/notebooks/covid-19-ecdc.ipynb",
    "output_path": "runs/covid-19-ecdc.run.ipynb",
    "parameters": {
-    "atlas_path": "/tmp/dd6gxpa1/data/atlas",
-    "data_path": "/tmp/dd6gxpa1/data/covid-19-ecdc"
+    "atlas_path": "/tmp/an0rzquz/data/atlas",
+    "data_path": "/tmp/an0rzquz/data/covid-19-ecdc"
    },
-   "start_time": "2020-04-19T20:00:53.582682",
+   "start_time": "2020-04-20T09:51:51.552927",
    "version": "1.1.0"
   },
   "pygments_lexer": "ipython3",
diff --git a/runs/covidtracking.run.ipynb b/runs/covidtracking.run.ipynb
index cced7f82b..1f4de333d 100644
--- a/runs/covidtracking.run.ipynb
+++ b/runs/covidtracking.run.ipynb
@@ -5,10 +5,10 @@
    "execution_count": 1,
    "metadata": {
     "papermill": {
-     "duration": 0.508153,
-     "end_time": "2020-04-19T20:00:58.646082",
+     "duration": 0.597873,
+     "end_time": "2020-04-20T09:51:47.142220",
      "exception": false,
-     "start_time": "2020-04-19T20:00:58.137929",
+     "start_time": "2020-04-20T09:51:46.544347",
      "status": "completed"
     },
     "tags": []
@@ -29,10 +29,10 @@
    "execution_count": 2,
    "metadata": {
     "papermill": {
-     "duration": 0.02172,
-     "end_time": "2020-04-19T20:00:58.681191",
+     "duration": 0.024862,
+     "end_time": "2020-04-20T09:51:47.184129",
      "exception": false,
-     "start_time": "2020-04-19T20:00:58.659471",
+     "start_time": "2020-04-20T09:51:47.159267",
      "status": "completed"
     },
     "tags": []
@@ -53,10 +53,10 @@
    "execution_count": 3,
    "metadata": {
     "papermill": {
-     "duration": 0.024953,
-     "end_time": "2020-04-19T20:00:58.717704",
+     "duration": 0.024958,
+     "end_time": "2020-04-20T09:51:47.222873",
      "exception": false,
-     "start_time": "2020-04-19T20:00:58.692751",
+     "start_time": "2020-04-20T09:51:47.197915",
      "status": "completed"
     },
     "tags": [
@@ -74,10 +74,10 @@
    "execution_count": 4,
    "metadata": {
     "papermill": {
-     "duration": 0.021568,
-     "end_time": "2020-04-19T20:00:58.752606",
+     "duration": 0.021662,
+     "end_time": "2020-04-20T09:51:47.256507",
      "exception": false,
-     "start_time": "2020-04-19T20:00:58.731038",
+     "start_time": "2020-04-20T09:51:47.234845",
      "status": "completed"
     },
     "tags": [
@@ -87,8 +87,8 @@
    "outputs": [],
    "source": [
     "# Parameters\n",
-    "data_path = \"/tmp/9gf7285g/data/covidtracking\"\n",
-    "atlas_path = \"/tmp/9gf7285g/data/atlas\"\n"
+    "data_path = \"/tmp/xcjeyspy/data/covidtracking\"\n",
+    "atlas_path = \"/tmp/xcjeyspy/data/atlas\"\n"
    ]
   },
   {
@@ -96,10 +96,10 @@
    "execution_count": 5,
    "metadata": {
     "papermill": {
-     "duration": 0.219313,
-     "end_time": "2020-04-19T20:00:58.983404",
+     "duration": 0.240299,
+     "end_time": "2020-04-20T09:51:47.510175",
      "exception": false,
-     "start_time": "2020-04-19T20:00:58.764091",
+     "start_time": "2020-04-20T09:51:47.269876",
      "status": "completed"
     },
     "tags": []
@@ -119,10 +119,10 @@
    "execution_count": 6,
    "metadata": {
     "papermill": {
-     "duration": 0.111903,
-     "end_time": "2020-04-19T20:00:59.109791",
+     "duration": 0.124272,
+     "end_time": "2020-04-20T09:51:47.648041",
      "exception": false,
-     "start_time": "2020-04-19T20:00:58.997888",
+     "start_time": "2020-04-20T09:51:47.523769",
      "status": "completed"
     },
     "tags": []
@@ -151,10 +151,10 @@
    "cell_type": "markdown",
    "metadata": {
     "papermill": {
-     "duration": 0.012204,
-     "end_time": "2020-04-19T20:00:59.136919",
+     "duration": 0.013064,
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@@ -1005,10 +1005,10 @@
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@@ -1037,17 +1037,17 @@
    "version": "3.7.3"
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    "environment_variables": {},
    "exception": null,
-   "input_path": "/tmp/9gf7285g/notebooks/covidtracking.ipynb",
+   "input_path": "/tmp/xcjeyspy/notebooks/covidtracking.ipynb",
    "output_path": "runs/covidtracking.run.ipynb",
    "parameters": {
-    "atlas_path": "/tmp/9gf7285g/data/atlas",
-    "data_path": "/tmp/9gf7285g/data/covidtracking"
+    "atlas_path": "/tmp/xcjeyspy/data/atlas",
+    "data_path": "/tmp/xcjeyspy/data/covidtracking"
    },
-   "start_time": "2020-04-19T20:00:57.296206",
+   "start_time": "2020-04-20T09:51:45.677940",
    "version": "1.1.0"
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diff --git a/runs/openzh-covid-19.run.ipynb b/runs/openzh-covid-19.run.ipynb
index e8f1f3bea..678b7151f 100644
--- a/runs/openzh-covid-19.run.ipynb
+++ b/runs/openzh-covid-19.run.ipynb
@@ -8,10 +8,10 @@
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@@ -30,10 +30,10 @@
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-     "start_time": "2020-04-19T20:01:03.693496",
+     "start_time": "2020-04-20T09:52:04.240159",
      "status": "completed"
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@@ -58,10 +58,10 @@
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-     "start_time": "2020-04-19T20:01:04.225433",
+     "start_time": "2020-04-20T09:52:04.764690",
      "status": "completed"
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@@ -83,10 +83,10 @@
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-     "duration": 0.033004,
-     "end_time": "2020-04-19T20:01:04.302572",
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      "exception": false,
-     "start_time": "2020-04-19T20:01:04.269568",
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      "status": "completed"
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@@ -97,9 +97,9 @@
    "source": [
     "# Parameters\n",
     "save_figures = True\n",
-    "data_path = \"/tmp/7lr67xnd/data/openzh-covid-19\"\n",
+    "data_path = \"/tmp/3hp3ff9h/data/openzh-covid-19\"\n",
     "figures_path = \"figures\"\n",
-    "atlas_path = \"/tmp/7lr67xnd/data/atlas\"\n"
+    "atlas_path = \"/tmp/3hp3ff9h/data/atlas\"\n"
    ]
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   {
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@@ -134,10 +134,10 @@
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+     "start_time": "2020-04-20T09:52:04.912630",
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      "exception": false,
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+     "start_time": "2020-04-20T09:52:04.930517",
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@@ -178,10 +178,10 @@
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-     "end_time": "2020-04-19T20:01:05.482059",
+     "duration": 0.008988,
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      "exception": false,
-     "start_time": "2020-04-19T20:01:05.473039",
+     "start_time": "2020-04-20T09:52:05.927191",
      "status": "completed"
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@@ -198,10 +198,10 @@
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-     "duration": 0.302139,
-     "end_time": "2020-04-19T20:01:05.793157",
+     "duration": 0.286407,
+     "end_time": "2020-04-20T09:52:06.231609",
      "exception": false,
-     "start_time": "2020-04-19T20:01:05.491018",
+     "start_time": "2020-04-20T09:52:05.945202",
      "status": "completed"
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@@ -211,10 +211,10 @@
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-- 
GitLab