diff --git a/notebooks/examples/openzh-covid-19-example.ipynb b/notebooks/examples/openzh-covid-19-example.ipynb
index d9ffdff2e70f6f15c5a2a855d0509b582ed6ac18..b56a09054ca71ad8210af223c61b578dd56ca9f2 100644
--- a/notebooks/examples/openzh-covid-19-example.ipynb
+++ b/notebooks/examples/openzh-covid-19-example.ipynb
@@ -2,14 +2,15 @@
"cells": [
{
"cell_type": "code",
- "execution_count": 1,
+ "execution_count": 24,
"metadata": {},
"outputs": [],
"source": [
"from pathlib import Path\n",
"\n",
"import altair as alt\n",
- "import pandas as pd"
+ "import pandas as pd\n",
+ "from IPython.display import display, HTML"
]
},
{
@@ -33,7 +34,7 @@
"\n",
"df = pd.concat(df_list)\n",
"\n",
- "df['Date'] = pd.to_datetime(df['Date'], dayfirst=True)"
+ "df['date'] = pd.to_datetime(df['date'], dayfirst=True)"
]
},
{
@@ -62,28 +63,28 @@
" <thead>\n",
" <tr style=\"text-align: right;\">\n",
" <th></th>\n",
- " <th>Date</th>\n",
- " <th>Area</th>\n",
- " <th>TotalTestedCases</th>\n",
- " <th>TotalConfCases</th>\n",
+ " <th>date</th>\n",
+ " <th>time</th>\n",
+ " <th>abbreviation_canton_and_fl</th>\n",
+ " <th>ncumul_tested</th>\n",
+ " <th>ncumul_conf</th>\n",
+ " <th>ncumul_hosp</th>\n",
+ " <th>ncumul_ICU</th>\n",
+ " <th>ncumul_vent</th>\n",
+ " <th>ncumul_released</th>\n",
+ " <th>ncumul_deceased</th>\n",
+ " <th>source</th>\n",
" <th>TotalPosTests1</th>\n",
" <th>TotalCured</th>\n",
- " <th>TotalDeaths</th>\n",
- " <th>TotalHospitalized</th>\n",
- " <th>Source</th>\n",
- " <th>Source2</th>\n",
- " <th>Source3</th>\n",
- " <th>Unnamed: 11</th>\n",
+ " <th>abbreviation_canton</th>\n",
" </tr>\n",
" </thead>\n",
" <tbody>\n",
" <tr>\n",
" <th>0</th>\n",
- " <td>2020-03-16</td>\n",
- " <td>Canton_BE</td>\n",
- " <td>NaN</td>\n",
- " <td>123</td>\n",
- " <td>131.0</td>\n",
+ " <td>2020-02-28</td>\n",
+ " <td>15:00</td>\n",
+ " <td>AG</td>\n",
" <td>NaN</td>\n",
" <td>1.0</td>\n",
" <td>NaN</td>\n",
@@ -91,88 +92,50 @@
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
- " </tr>\n",
- " <tr>\n",
- " <th>1</th>\n",
- " <td>2020-03-18</td>\n",
- " <td>Canton_BE</td>\n",
- " <td>NaN</td>\n",
- " <td>193</td>\n",
- " <td>NaN</td>\n",
- " <td>NaN</td>\n",
- " <td>1.0</td>\n",
- " <td>NaN</td>\n",
- " <td>NaN</td>\n",
- " <td>NaN</td>\n",
- " <td>NaN</td>\n",
- " <td>NaN</td>\n",
- " </tr>\n",
- " <tr>\n",
- " <th>0</th>\n",
- " <td>2020-02-28</td>\n",
- " <td>Canton_BL</td>\n",
- " <td>NaN</td>\n",
- " <td>1</td>\n",
- " <td>NaN</td>\n",
- " <td>NaN</td>\n",
- " <td>NaN</td>\n",
- " <td>NaN</td>\n",
- " <td>https://www.baselland.ch/politik-und-behorden/...</td>\n",
+ " <td>https://www.ag.ch/media/kanton_aargau/themen_1...</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" </tr>\n",
" <tr>\n",
" <th>1</th>\n",
- " <td>2020-02-29</td>\n",
- " <td>Canton_BL</td>\n",
+ " <td>2020-03-02</td>\n",
+ " <td>18:00</td>\n",
+ " <td>AG</td>\n",
+ " <td>NaN</td>\n",
+ " <td>2.0</td>\n",
" <td>NaN</td>\n",
- " <td>2</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
- " <td>https://www.baselland.ch/politik-und-behorden/...</td>\n",
+ " <td>https://www.ag.ch/media/kanton_aargau/themen_1...</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" </tr>\n",
" <tr>\n",
" <th>2</th>\n",
- " <td>2020-03-01</td>\n",
- " <td>Canton_BL</td>\n",
+ " <td>2020-03-03</td>\n",
+ " <td>15:00</td>\n",
+ " <td>AG</td>\n",
" <td>NaN</td>\n",
- " <td>2</td>\n",
+ " <td>6.0</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
+ " <td>https://www.ag.ch/media/kanton_aargau/themen_1...</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" </tr>\n",
" <tr>\n",
- " <th>...</th>\n",
- " <td>...</td>\n",
- " <td>...</td>\n",
- " <td>...</td>\n",
- " <td>...</td>\n",
- " <td>...</td>\n",
- " <td>...</td>\n",
- " <td>...</td>\n",
- " <td>...</td>\n",
- " <td>...</td>\n",
- " <td>...</td>\n",
- " <td>...</td>\n",
- " <td>...</td>\n",
- " </tr>\n",
- " <tr>\n",
- " <th>11</th>\n",
- " <td>2020-03-12</td>\n",
- " <td>Canton_ZH</td>\n",
- " <td>NaN</td>\n",
- " <td>92</td>\n",
+ " <th>3</th>\n",
+ " <td>2020-03-04</td>\n",
+ " <td>15:00</td>\n",
+ " <td>AG</td>\n",
" <td>NaN</td>\n",
" <td>7.0</td>\n",
" <td>NaN</td>\n",
@@ -180,127 +143,60 @@
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
- " <td>NaN</td>\n",
- " </tr>\n",
- " <tr>\n",
- " <th>12</th>\n",
- " <td>2020-03-13</td>\n",
- " <td>Canton_ZH</td>\n",
- " <td>NaN</td>\n",
- " <td>140</td>\n",
- " <td>NaN</td>\n",
- " <td>11.0</td>\n",
- " <td>NaN</td>\n",
- " <td>NaN</td>\n",
- " <td>NaN</td>\n",
+ " <td>https://www.ag.ch/media/kanton_aargau/themen_1...</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" </tr>\n",
" <tr>\n",
- " <th>13</th>\n",
- " <td>2020-03-16</td>\n",
- " <td>Canton_ZH</td>\n",
+ " <th>4</th>\n",
+ " <td>2020-03-05</td>\n",
+ " <td>15:00</td>\n",
+ " <td>AG</td>\n",
" <td>NaN</td>\n",
- " <td>270</td>\n",
- " <td>NaN</td>\n",
- " <td>NaN</td>\n",
- " <td>1.0</td>\n",
- " <td>NaN</td>\n",
- " <td>NaN</td>\n",
- " <td>NaN</td>\n",
- " <td>NaN</td>\n",
- " <td>NaN</td>\n",
- " </tr>\n",
- " <tr>\n",
- " <th>14</th>\n",
- " <td>2020-03-17</td>\n",
- " <td>Canton_ZH</td>\n",
- " <td>NaN</td>\n",
- " <td>294</td>\n",
- " <td>NaN</td>\n",
- " <td>NaN</td>\n",
- " <td>NaN</td>\n",
- " <td>NaN</td>\n",
- " <td>NaN</td>\n",
- " <td>NaN</td>\n",
- " <td>NaN</td>\n",
- " <td>NaN</td>\n",
- " </tr>\n",
- " <tr>\n",
- " <th>15</th>\n",
- " <td>2020-03-18</td>\n",
- " <td>Canton_ZH</td>\n",
- " <td>NaN</td>\n",
- " <td>424</td>\n",
+ " <td>9.0</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
+ " <td>https://www.ag.ch/media/kanton_aargau/themen_1...</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" <td>NaN</td>\n",
" </tr>\n",
" </tbody>\n",
"</table>\n",
- "<p>75 rows × 12 columns</p>\n",
"</div>"
],
"text/plain": [
- " Date Area TotalTestedCases TotalConfCases TotalPosTests1 \\\n",
- "0 2020-03-16 Canton_BE NaN 123 131.0 \n",
- "1 2020-03-18 Canton_BE NaN 193 NaN \n",
- "0 2020-02-28 Canton_BL NaN 1 NaN \n",
- "1 2020-02-29 Canton_BL NaN 2 NaN \n",
- "2 2020-03-01 Canton_BL NaN 2 NaN \n",
- ".. ... ... ... ... ... \n",
- "11 2020-03-12 Canton_ZH NaN 92 NaN \n",
- "12 2020-03-13 Canton_ZH NaN 140 NaN \n",
- "13 2020-03-16 Canton_ZH NaN 270 NaN \n",
- "14 2020-03-17 Canton_ZH NaN 294 NaN \n",
- "15 2020-03-18 Canton_ZH NaN 424 NaN \n",
- "\n",
- " TotalCured TotalDeaths TotalHospitalized \\\n",
- "0 NaN 1.0 NaN \n",
- "1 NaN 1.0 NaN \n",
- "0 NaN NaN NaN \n",
- "1 NaN NaN NaN \n",
- "2 NaN NaN NaN \n",
- ".. ... ... ... \n",
- "11 7.0 NaN NaN \n",
- "12 11.0 NaN NaN \n",
- "13 NaN 1.0 NaN \n",
- "14 NaN NaN NaN \n",
- "15 NaN NaN NaN \n",
+ " date time abbreviation_canton_and_fl ncumul_tested ncumul_conf \\\n",
+ "0 2020-02-28 15:00 AG NaN 1.0 \n",
+ "1 2020-03-02 18:00 AG NaN 2.0 \n",
+ "2 2020-03-03 15:00 AG NaN 6.0 \n",
+ "3 2020-03-04 15:00 AG NaN 7.0 \n",
+ "4 2020-03-05 15:00 AG NaN 9.0 \n",
"\n",
- " Source Source2 Source3 \\\n",
- "0 NaN NaN NaN \n",
- "1 NaN NaN NaN \n",
- "0 https://www.baselland.ch/politik-und-behorden/... NaN NaN \n",
- "1 https://www.baselland.ch/politik-und-behorden/... NaN NaN \n",
- "2 NaN NaN NaN \n",
- ".. ... ... ... \n",
- "11 NaN NaN NaN \n",
- "12 NaN NaN NaN \n",
- "13 NaN NaN NaN \n",
- "14 NaN NaN NaN \n",
- "15 NaN NaN NaN \n",
+ " ncumul_hosp ncumul_ICU ncumul_vent ncumul_released ncumul_deceased \\\n",
+ "0 NaN NaN NaN NaN NaN \n",
+ "1 NaN NaN NaN NaN NaN \n",
+ "2 NaN NaN NaN NaN NaN \n",
+ "3 NaN NaN NaN NaN NaN \n",
+ "4 NaN NaN NaN NaN NaN \n",
"\n",
- " Unnamed: 11 \n",
- "0 NaN \n",
- "1 NaN \n",
- "0 NaN \n",
- "1 NaN \n",
- "2 NaN \n",
- ".. ... \n",
- "11 NaN \n",
- "12 NaN \n",
- "13 NaN \n",
- "14 NaN \n",
- "15 NaN \n",
+ " source TotalPosTests1 \\\n",
+ "0 https://www.ag.ch/media/kanton_aargau/themen_1... NaN \n",
+ "1 https://www.ag.ch/media/kanton_aargau/themen_1... NaN \n",
+ "2 https://www.ag.ch/media/kanton_aargau/themen_1... NaN \n",
+ "3 https://www.ag.ch/media/kanton_aargau/themen_1... NaN \n",
+ "4 https://www.ag.ch/media/kanton_aargau/themen_1... NaN \n",
"\n",
- "[75 rows x 12 columns]"
+ " TotalCured abbreviation_canton \n",
+ "0 NaN NaN \n",
+ "1 NaN NaN \n",
+ "2 NaN NaN \n",
+ "3 NaN NaN \n",
+ "4 NaN NaN "
]
},
"execution_count": 3,
@@ -310,7 +206,7 @@
],
"source": [
"# display the dataframe\n",
- "df"
+ "df.head()"
]
},
{
@@ -322,17 +218,17 @@
},
{
"cell_type": "code",
- "execution_count": 4,
+ "execution_count": 28,
"metadata": {},
"outputs": [
{
"data": {
"text/html": [
"\n",
- "<div id=\"altair-viz-0dc4f9b9fee5403e9ce1b7e9c219a9f0\"></div>\n",
+ "<div id=\"altair-viz-b73c04dd691f4e5586b0a9f0dd39f35e\"></div>\n",
"<script type=\"text/javascript\">\n",
" (function(spec, embedOpt){\n",
- " const outputDiv = document.getElementById(\"altair-viz-0dc4f9b9fee5403e9ce1b7e9c219a9f0\");\n",
+ " const outputDiv = document.getElementById(\"altair-viz-b73c04dd691f4e5586b0a9f0dd39f35e\");\n",
" const paths = {\n",
" \"vega\": \"https://cdn.jsdelivr.net/npm//vega@5?noext\",\n",
" \"vega-lib\": \"https://cdn.jsdelivr.net/npm//vega-lib?noext\",\n",
@@ -373,28 +269,53 @@
" .catch(showError)\n",
" .then(() => displayChart(vegaEmbed));\n",
" }\n",
- " })({\"config\": {\"view\": {\"continuousWidth\": 400, \"continuousHeight\": 300}}, \"data\": {\"name\": \"data-a1f62021ac6cee94dbfc4af2257f04ca\"}, \"mark\": \"line\", \"encoding\": {\"color\": {\"type\": \"nominal\", \"field\": \"Area\"}, \"x\": {\"type\": \"temporal\", \"field\": \"Date\"}, \"y\": {\"type\": \"quantitative\", \"field\": \"TotalConfCases\"}}, \"$schema\": \"https://vega.github.io/schema/vega-lite/v4.0.2.json\", \"datasets\": {\"data-a1f62021ac6cee94dbfc4af2257f04ca\": [{\"Date\": \"2020-03-16T00:00:00\", \"Area\": \"Canton_BE\", \"TotalTestedCases\": null, \"TotalConfCases\": 123, \"TotalPosTests1\": 131.0, \"TotalCured\": null, \"TotalDeaths\": 1.0, \"TotalHospitalized\": null, \"Source\": null, \"Source2\": null, \"Source3\": null, \"Unnamed: 11\": null}, {\"Date\": \"2020-03-18T00:00:00\", \"Area\": \"Canton_BE\", \"TotalTestedCases\": null, \"TotalConfCases\": 193, \"TotalPosTests1\": null, \"TotalCured\": null, \"TotalDeaths\": 1.0, \"TotalHospitalized\": null, \"Source\": null, \"Source2\": null, \"Source3\": null, \"Unnamed: 11\": null}, {\"Date\": \"2020-02-28T00:00:00\", \"Area\": \"Canton_BL\", \"TotalTestedCases\": null, \"TotalConfCases\": 1, \"TotalPosTests1\": null, \"TotalCured\": null, \"TotalDeaths\": null, \"TotalHospitalized\": null, \"Source\": \"https://www.baselland.ch/politik-und-behorden/direktionen/volkswirtschafts-und-gesundheitsdirektion/medienmitteilungen/neuer-coronavirus-covid-19-erster-bestaetigter-fall-aus-dem-kanton-basel-landschaft\", \"Source2\": null, \"Source3\": null, \"Unnamed: 11\": null}, {\"Date\": \"2020-02-29T00:00:00\", \"Area\": \"Canton_BL\", \"TotalTestedCases\": null, \"TotalConfCases\": 2, \"TotalPosTests1\": null, \"TotalCured\": null, \"TotalDeaths\": null, \"TotalHospitalized\": null, \"Source\": \"https://www.baselland.ch/politik-und-behorden/direktionen/volkswirtschafts-und-gesundheitsdirektion/medienmitteilungen/weiterer-bestaetigter-fall-aus-dem-kanton-basel-landschaft\", \"Source2\": null, \"Source3\": null, \"Unnamed: 11\": null}, {\"Date\": \"2020-03-01T00:00:00\", \"Area\": \"Canton_BL\", \"TotalTestedCases\": null, \"TotalConfCases\": 2, \"TotalPosTests1\": null, \"TotalCured\": null, \"TotalDeaths\": null, \"TotalHospitalized\": null, \"Source\": null, \"Source2\": null, \"Source3\": null, \"Unnamed: 11\": null}, {\"Date\": \"2020-03-02T00:00:00\", \"Area\": \"Canton_BL\", \"TotalTestedCases\": null, \"TotalConfCases\": 2, \"TotalPosTests1\": null, \"TotalCured\": null, \"TotalDeaths\": null, \"TotalHospitalized\": null, \"Source\": null, \"Source2\": null, \"Source3\": null, \"Unnamed: 11\": null}, {\"Date\": \"2020-03-03T00:00:00\", \"Area\": \"Canton_BL\", \"TotalTestedCases\": null, \"TotalConfCases\": 2, \"TotalPosTests1\": null, \"TotalCured\": null, \"TotalDeaths\": null, \"TotalHospitalized\": null, \"Source\": null, \"Source2\": null, \"Source3\": null, \"Unnamed: 11\": null}, {\"Date\": \"2020-03-04T00:00:00\", \"Area\": \"Canton_BL\", \"TotalTestedCases\": null, \"TotalConfCases\": 2, \"TotalPosTests1\": null, \"TotalCured\": null, \"TotalDeaths\": null, \"TotalHospitalized\": null, \"Source\": null, \"Source2\": null, \"Source3\": null, \"Unnamed: 11\": null}, {\"Date\": \"2020-03-05T00:00:00\", \"Area\": \"Canton_BL\", \"TotalTestedCases\": null, \"TotalConfCases\": 6, \"TotalPosTests1\": null, \"TotalCured\": null, \"TotalDeaths\": null, \"TotalHospitalized\": null, \"Source\": \"https://www.baselland.ch/politik-und-behorden/direktionen/volkswirtschafts-und-gesundheitsdirektion/medienmitteilungen/neuer-coronavirus-covid-19-sechs-bestaetigte-faelle-im-kanton-basel-landschaft\", \"Source2\": null, \"Source3\": null, \"Unnamed: 11\": null}, {\"Date\": \"2020-03-06T00:00:00\", \"Area\": \"Canton_BL\", \"TotalTestedCases\": null, \"TotalConfCases\": 6, \"TotalPosTests1\": null, \"TotalCured\": null, \"TotalDeaths\": null, \"TotalHospitalized\": null, \"Source\": null, \"Source2\": null, \"Source3\": null, \"Unnamed: 11\": null}, {\"Date\": \"2020-03-07T00:00:00\", \"Area\": \"Canton_BL\", \"TotalTestedCases\": null, \"TotalConfCases\": 15, \"TotalPosTests1\": null, \"TotalCured\": null, \"TotalDeaths\": null, \"TotalHospitalized\": null, \"Source\": \"https://www.baselland.ch/politik-und-behorden/direktionen/volkswirtschafts-und-gesundheitsdirektion/medienmitteilungen/update-15-bestaetigte-faelle-in-basel-landschaft\", \"Source2\": null, \"Source3\": null, \"Unnamed: 11\": null}, {\"Date\": \"2020-03-08T00:00:00\", \"Area\": \"Canton_BL\", \"TotalTestedCases\": null, \"TotalConfCases\": 19, \"TotalPosTests1\": null, \"TotalCured\": null, \"TotalDeaths\": 1.0, \"TotalHospitalized\": null, \"Source\": \"https://www.baselland.ch/politik-und-behorden/direktionen/volkswirtschafts-und-gesundheitsdirektion/medienmitteilungen/patient-im-kantonsspital-baselland-stirbt-an-den-folgen-einer-coronavirus-infektion\", \"Source2\": null, \"Source3\": null, \"Unnamed: 11\": null}, {\"Date\": \"2020-03-09T00:00:00\", \"Area\": \"Canton_BL\", \"TotalTestedCases\": null, \"TotalConfCases\": 20, \"TotalPosTests1\": null, \"TotalCured\": null, \"TotalDeaths\": 1.0, \"TotalHospitalized\": null, \"Source\": \"https://www.baselland.ch/politik-und-behorden/direktionen/volkswirtschafts-und-gesundheitsdirektion/medienmitteilungen/update-xx-bestaetigte-faelle-in-basel-landschaft\", \"Source2\": null, \"Source3\": null, \"Unnamed: 11\": null}, {\"Date\": \"2020-03-10T00:00:00\", \"Area\": \"Canton_BL\", \"TotalTestedCases\": null, \"TotalConfCases\": 22, \"TotalPosTests1\": null, \"TotalCured\": null, \"TotalDeaths\": 1.0, \"TotalHospitalized\": null, \"Source\": \"https://www.baselland.ch/politik-und-behorden/direktionen/volkswirtschafts-und-gesundheitsdirektion/medienmitteilungen/update\", \"Source2\": null, \"Source3\": null, \"Unnamed: 11\": null}, {\"Date\": \"2020-03-11T00:00:00\", \"Area\": \"Canton_BL\", \"TotalTestedCases\": null, \"TotalConfCases\": 26, \"TotalPosTests1\": null, \"TotalCured\": null, \"TotalDeaths\": 2.0, \"TotalHospitalized\": null, \"Source\": \"https://www.baselland.ch/politik-und-behorden/direktionen/volkswirtschafts-und-gesundheitsdirektion/medienmitteilungen/update-26-bestaetigte-faelle-in-basel-landschaft-1\", \"Source2\": \"https://www.baselland.ch/politik-und-behorden/direktionen/volkswirtschafts-und-gesundheitsdirektion/medienmitteilungen/zweiter-baselbieter-patient-stirbt-an-den-folgen-einer-covid-19-infektion\", \"Source3\": null, \"Unnamed: 11\": null}, {\"Date\": \"2020-03-12T00:00:00\", \"Area\": \"Canton_BL\", \"TotalTestedCases\": null, \"TotalConfCases\": 26, \"TotalPosTests1\": null, \"TotalCured\": null, \"TotalDeaths\": 2.0, \"TotalHospitalized\": null, \"Source\": null, \"Source2\": null, \"Source3\": null, \"Unnamed: 11\": null}, {\"Date\": \"2020-03-13T00:00:00\", \"Area\": \"Canton_BL\", \"TotalTestedCases\": null, \"TotalConfCases\": 42, \"TotalPosTests1\": null, \"TotalCured\": null, \"TotalDeaths\": 2.0, 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\"https://www.baselland.ch/politik-und-behorden/direktionen/volkswirtschafts-und-gesundheitsdirektion/medienmitteilungen/patient-im-kantonsspital-baselland-stirbt-an-den-folgen-einer-coronavirus-infektion\", \"TotalPosTests1\": null, \"TotalCured\": null, \"abbreviation_canton\": null}, {\"date\": \"2020-03-09T00:00:00\", \"time\": null, \"abbreviation_canton_and_fl\": \"BL\", \"ncumul_tested\": null, \"ncumul_conf\": 20.0, \"ncumul_hosp\": null, \"ncumul_ICU\": null, \"ncumul_vent\": null, \"ncumul_released\": null, \"ncumul_deceased\": 1.0, \"source\": \"https://www.baselland.ch/politik-und-behorden/direktionen/volkswirtschafts-und-gesundheitsdirektion/medienmitteilungen/update-xx-bestaetigte-faelle-in-basel-landschaft\", \"TotalPosTests1\": null, \"TotalCured\": null, \"abbreviation_canton\": null}, {\"date\": \"2020-03-10T00:00:00\", \"time\": null, \"abbreviation_canton_and_fl\": \"BL\", \"ncumul_tested\": null, \"ncumul_conf\": 22.0, \"ncumul_hosp\": null, \"ncumul_ICU\": null, \"ncumul_vent\": null, \"ncumul_released\": null, \"ncumul_deceased\": 1.0, \"source\": \"https://www.baselland.ch/politik-und-behorden/direktionen/volkswirtschafts-und-gesundheitsdirektion/medienmitteilungen/update\", \"TotalPosTests1\": null, \"TotalCured\": null, \"abbreviation_canton\": null}, {\"date\": \"2020-03-11T00:00:00\", \"time\": null, \"abbreviation_canton_and_fl\": \"BL\", \"ncumul_tested\": null, \"ncumul_conf\": 26.0, \"ncumul_hosp\": null, \"ncumul_ICU\": null, \"ncumul_vent\": null, \"ncumul_released\": null, \"ncumul_deceased\": 2.0, \"source\": \"https://www.baselland.ch/politik-und-behorden/direktionen/volkswirtschafts-und-gesundheitsdirektion/medienmitteilungen/update-26-bestaetigte-faelle-in-basel-landschaft-1\", \"TotalPosTests1\": null, \"TotalCured\": null, \"abbreviation_canton\": null}, {\"date\": \"2020-03-12T00:00:00\", \"time\": null, \"abbreviation_canton_and_fl\": \"BL\", \"ncumul_tested\": null, \"ncumul_conf\": 26.0, \"ncumul_hosp\": null, 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\"ncumul_released\": null, \"ncumul_deceased\": 2.0, \"source\": \"https://www.baselland.ch/politik-und-behorden/direktionen/volkswirtschafts-und-gesundheitsdirektion/medienmitteilungen/update-67-bestaetigte-faelle-in-basel-landschaft\", \"TotalPosTests1\": null, \"TotalCured\": null, \"abbreviation_canton\": null}, {\"date\": \"2020-03-17T00:00:00\", \"time\": null, \"abbreviation_canton_and_fl\": \"BL\", \"ncumul_tested\": null, \"ncumul_conf\": 89.0, \"ncumul_hosp\": null, \"ncumul_ICU\": null, \"ncumul_vent\": null, \"ncumul_released\": null, \"ncumul_deceased\": 2.0, \"source\": \"https://www.baselland.ch/politik-und-behorden/direktionen/volkswirtschafts-und-gesundheitsdirektion/medienmitteilungen/update-89-bestaetigte-faelle-in-basel-landschaft\", \"TotalPosTests1\": null, \"TotalCured\": null, \"abbreviation_canton\": null}, {\"date\": \"2020-03-18T00:00:00\", \"time\": null, \"abbreviation_canton_and_fl\": \"BL\", \"ncumul_tested\": null, \"ncumul_conf\": 116.0, 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\"BL\", \"ncumul_tested\": null, \"ncumul_conf\": 184.0, \"ncumul_hosp\": null, \"ncumul_ICU\": null, \"ncumul_vent\": null, \"ncumul_released\": null, \"ncumul_deceased\": 2.0, \"source\": \"https://www.baselland.ch/politik-und-behorden/direktionen/volkswirtschafts-und-gesundheitsdirektion/medienmitteilungen/update-170-bestaetigte-faelle-in-basel-landschaft\", \"TotalPosTests1\": null, \"TotalCured\": null, \"abbreviation_canton\": null}, {\"date\": \"2020-03-18T00:00:00\", \"time\": null, \"abbreviation_canton_and_fl\": \"GR\", \"ncumul_tested\": null, \"ncumul_conf\": 116.0, \"ncumul_hosp\": 13.0, \"ncumul_ICU\": null, \"ncumul_vent\": null, \"ncumul_released\": null, \"ncumul_deceased\": 1.0, \"source\": \"https://www.gr.ch/DE/institutionen/verwaltung/djsg/ga/coronavirus/info/Seiten/Start.aspx\", \"TotalPosTests1\": null, \"TotalCured\": null, \"abbreviation_canton\": null}, {\"date\": \"2020-03-19T00:00:00\", \"time\": null, \"abbreviation_canton_and_fl\": \"GR\", \"ncumul_tested\": null, \"ncumul_conf\": 145.0, \"ncumul_hosp\": 18.0, \"ncumul_ICU\": null, \"ncumul_vent\": null, \"ncumul_released\": null, \"ncumul_deceased\": 1.0, \"source\": \"https://www.gr.ch/DE/institutionen/verwaltung/djsg/ga/coronavirus/info/Seiten/Start.aspx\", \"TotalPosTests1\": null, \"TotalCured\": null, \"abbreviation_canton\": null}, {\"date\": \"2020-03-20T00:00:00\", \"time\": null, \"abbreviation_canton_and_fl\": \"GR\", \"ncumul_tested\": null, \"ncumul_conf\": 213.0, \"ncumul_hosp\": 24.0, \"ncumul_ICU\": null, \"ncumul_vent\": null, \"ncumul_released\": null, \"ncumul_deceased\": 3.0, \"source\": \"https://www.gr.ch/DE/institutionen/verwaltung/djsg/ga/coronavirus/info/Seiten/Start.aspx\", \"TotalPosTests1\": null, \"TotalCured\": null, \"abbreviation_canton\": null}, {\"date\": \"2020-03-14T00:00:00\", \"time\": null, \"abbreviation_canton_and_fl\": \"AI\", \"ncumul_tested\": null, \"ncumul_conf\": 2.0, \"ncumul_hosp\": null, \"ncumul_ICU\": null, \"ncumul_vent\": null, \"ncumul_released\": null, \"ncumul_deceased\": null, \"source\": \"https://www.ai.ch/themen/gesundheit-alter-und-soziales/gesundheitsfoerderung-und-praevention/aktuelles/erste-bestaetigte-coronavirus-faelle-auch-in-innerrhoden\", \"TotalPosTests1\": null, \"TotalCured\": null, \"abbreviation_canton\": null}]}}, {\"mode\": \"vega-lite\"});\n",
"</script>"
],
"text/plain": [
"alt.Chart(...)"
]
},
- "execution_count": 4,
"metadata": {},
- "output_type": "execute_result"
+ "output_type": "display_data"
+ },
+ {
+ "data": {
+ "text/html": [
+ "\n",
+ "<p style=\"font-size: smaller\">Data Source: \n",
+ " <a href=\"https://github.com/openZH/covid_19.git\">OpenData Zuerich</a>,\n",
+ " <a href=\"https://renkulab.io/projects/covid-19/covid-19-public-data\">Covid-19 Public Data Collaboration Project</a>\n",
+ "</p>"
+ ],
+ "text/plain": [
+ "<IPython.core.display.HTML object>"
+ ]
+ },
+ "metadata": {},
+ "output_type": "display_data"
}
],
"source": [
- "alt.Chart(df).mark_line().encode(x='Date', y='TotalConfCases', color='Area')"
+ "chart = alt.Chart(\n",
+ " df.where(df.ncumul_conf>0).dropna(subset=['abbreviation_canton_and_fl']), title='Covid-19 cases in Switzerland by Canton'\n",
+ ").mark_line().encode(\n",
+ " alt.X('date', title='Date'), \n",
+ " alt.Y('ncumul_conf', \n",
+ " title='Cases', scale=alt.Scale(type='log')),\n",
+ " color=alt.Color('abbreviation_canton_and_fl', legend=alt.Legend(title=\"Canton\")),\n",
+ " tooltip=[alt.Tooltip('abbreviation_canton_and_fl',title='Canton'),\n",
+ " alt.Tooltip('ncumul_conf',title='Cumulative')]\n",
+ ")\n",
+ "chart.configure_header(titleFontSize=25)\n",
+ "chart.configure_axis(labelFontSize=15, titleFontSize=15)\n",
+ "display(chart)\n",
+ "display(HTML('''\n",
+ "<p style=\"font-size: smaller\">Data Source: \n",
+ " <a href=\"https://github.com/openZH/covid_19.git\">OpenData Zuerich</a>,\n",
+ " <a href=\"https://renkulab.io/projects/covid-19/covid-19-public-data\">Covid-19 Public Data Collaboration Project</a>\n",
+ "</p>'''))"
]
- },
- {
- "cell_type": "code",
- "execution_count": null,
- "metadata": {},
- "outputs": [],
- "source": []
}
],
"metadata": {
@@ -413,7 +334,7 @@
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
- "version": "3.7.6"
+ "version": "3.7.7"
}
},
"nbformat": 4,