diff --git a/.renku/workflow/7b4a2ee9bf9a4696bc4aff37db1fa388.cwl b/.renku/workflow/7b4a2ee9bf9a4696bc4aff37db1fa388.cwl
new file mode 100644
index 0000000000000000000000000000000000000000..9f43ed6f6b25c69f8e50211b951bda3bc60b8a7b
--- /dev/null
+++ b/.renku/workflow/7b4a2ee9bf9a4696bc4aff37db1fa388.cwl
@@ -0,0 +1,120 @@
+class: Workflow
+cwlVersion: v1.0
+hints: []
+inputs:
+ input_1:
+ default: states-daily.json
+ streamable: false
+ type: string
+ input_2:
+ default: states-metadata.json
+ streamable: false
+ type: string
+ input_3:
+ default: out_folder
+ streamable: false
+ type: string
+ input_4:
+ default: data/covidtracking
+ streamable: false
+ type: string
+ input_5:
+ default:
+ class: File
+ path: ../../notebooks/process/download-covidtracking-data.ipynb
+ streamable: false
+ type: File
+ input_6:
+ default: runs/download-covidtracking-data.runs.ipynb
+ streamable: false
+ type: string
+outputs:
+ output_2:
+ outputSource: step_3/output_1
+ streamable: false
+ type: Directory
+ output_3:
+ outputSource: step_3/output_0
+ streamable: false
+ type: File
+requirements: []
+steps:
+ step_1:
+ in:
+ filename: input_1
+ input_directory: step_3/output_1
+ out:
+ - output_file
+ run:
+ arguments: []
+ baseCommand:
+ - 'true'
+ class: CommandLineTool
+ cwlVersion: v1.0
+ hints: []
+ inputs:
+ filename:
+ default: states-daily.json
+ streamable: false
+ type: string
+ input_directory:
+ streamable: false
+ type: Directory
+ outputs:
+ output_file:
+ outputBinding:
+ glob: $(inputs.filename)
+ streamable: false
+ type: File
+ permanentFailCodes: []
+ requirements:
+ - &id001
+ class: InlineJavascriptRequirement
+ - &id002
+ class: InitialWorkDirRequirement
+ listing: $(inputs.input_directory.listing)
+ successCodes: []
+ temporaryFailCodes: []
+ step_2:
+ in:
+ filename: input_2
+ input_directory: step_3/output_1
+ out:
+ - output_file
+ run:
+ arguments: []
+ baseCommand:
+ - 'true'
+ class: CommandLineTool
+ cwlVersion: v1.0
+ hints: []
+ inputs:
+ filename:
+ default: states-metadata.json
+ streamable: false
+ type: string
+ input_directory:
+ streamable: false
+ type: Directory
+ outputs:
+ output_file:
+ outputBinding:
+ glob: $(inputs.filename)
+ streamable: false
+ type: File
+ permanentFailCodes: []
+ requirements:
+ - *id001
+ - *id002
+ successCodes: []
+ temporaryFailCodes: []
+ step_3:
+ in:
+ input_1: input_3
+ input_2: input_4
+ input_3: input_5
+ input_4: input_6
+ out:
+ - output_1
+ - output_0
+ run: a17d560c41a54f5aa307ce5f3c5effe5_papermill.cwl
diff --git a/runs/download-covidtracking-data.runs.ipynb b/runs/download-covidtracking-data.runs.ipynb
index c1ef0273ebf7895b55d94f791aa072208a0695b3..fd35742354f7b282bb64b4447b25ed2c002caae2 100644
--- a/runs/download-covidtracking-data.runs.ipynb
+++ b/runs/download-covidtracking-data.runs.ipynb
@@ -5,10 +5,10 @@
"execution_count": 1,
"metadata": {
"papermill": {
- "duration": 0.506363,
- "end_time": "2020-03-26T12:38:33.422061",
+ "duration": 0.51734,
+ "end_time": "2020-03-26T13:21:56.000330",
"exception": false,
- "start_time": "2020-03-26T12:38:32.915698",
+ "start_time": "2020-03-26T13:21:55.482990",
"status": "completed"
},
"tags": []
@@ -25,10 +25,10 @@
"execution_count": 2,
"metadata": {
"papermill": {
- "duration": 0.020958,
- "end_time": "2020-03-26T12:38:33.458041",
+ "duration": 0.017081,
+ "end_time": "2020-03-26T13:21:56.027414",
"exception": false,
- "start_time": "2020-03-26T12:38:33.437083",
+ "start_time": "2020-03-26T13:21:56.010333",
"status": "completed"
},
"tags": [
@@ -46,10 +46,10 @@
"execution_count": 3,
"metadata": {
"papermill": {
- "duration": 0.023542,
- "end_time": "2020-03-26T12:38:33.490779",
+ "duration": 0.025079,
+ "end_time": "2020-03-26T13:21:56.059563",
"exception": false,
- "start_time": "2020-03-26T12:38:33.467237",
+ "start_time": "2020-03-26T13:21:56.034484",
"status": "completed"
},
"tags": [
@@ -59,19 +59,19 @@
"outputs": [],
"source": [
"# Parameters\n",
- "PAPERMILL_INPUT_PATH = \"notebooks/process/download-covidtracking-data.ipynb\"\n",
+ "PAPERMILL_INPUT_PATH = \"/tmp/k17s7jwl/notebooks/process/download-covidtracking-data.ipynb\"\n",
"PAPERMILL_OUTPUT_PATH = \"runs/download-covidtracking-data.runs.ipynb\"\n",
- "out_folder = \"./data/covidtracking/\"\n"
+ "out_folder = \"data/covidtracking\"\n"
]
},
{
"cell_type": "markdown",
"metadata": {
"papermill": {
- "duration": 0.007637,
- "end_time": "2020-03-26T12:38:33.508933",
+ "duration": 0.006758,
+ "end_time": "2020-03-26T13:21:56.077082",
"exception": false,
- "start_time": "2020-03-26T12:38:33.501296",
+ "start_time": "2020-03-26T13:21:56.070324",
"status": "completed"
},
"tags": []
@@ -87,10 +87,10 @@
"execution_count": 4,
"metadata": {
"papermill": {
- "duration": 0.211295,
- "end_time": "2020-03-26T12:38:33.726495",
+ "duration": 0.134103,
+ "end_time": "2020-03-26T13:21:56.217501",
"exception": false,
- "start_time": "2020-03-26T12:38:33.515200",
+ "start_time": "2020-03-26T13:21:56.083398",
"status": "completed"
},
"tags": []
@@ -107,10 +107,10 @@
"execution_count": 5,
"metadata": {
"papermill": {
- "duration": 0.025576,
- "end_time": "2020-03-26T12:38:33.768948",
+ "duration": 0.028571,
+ "end_time": "2020-03-26T13:21:56.258997",
"exception": false,
- "start_time": "2020-03-26T12:38:33.743372",
+ "start_time": "2020-03-26T13:21:56.230426",
"status": "completed"
},
"tags": []
@@ -129,10 +129,10 @@
"execution_count": 6,
"metadata": {
"papermill": {
- "duration": 0.073344,
- "end_time": "2020-03-26T12:38:33.849972",
+ "duration": 0.079534,
+ "end_time": "2020-03-26T13:21:56.353888",
"exception": false,
- "start_time": "2020-03-26T12:38:33.776628",
+ "start_time": "2020-03-26T13:21:56.274354",
"status": "completed"
},
"tags": []
@@ -246,10 +246,10 @@
"cell_type": "markdown",
"metadata": {
"papermill": {
- "duration": 0.007572,
- "end_time": "2020-03-26T12:38:33.873621",
+ "duration": 0.008019,
+ "end_time": "2020-03-26T13:21:56.375707",
"exception": false,
- "start_time": "2020-03-26T12:38:33.866049",
+ "start_time": "2020-03-26T13:21:56.367688",
"status": "completed"
},
"tags": []
@@ -263,10 +263,10 @@
"execution_count": 7,
"metadata": {
"papermill": {
- "duration": 0.178588,
- "end_time": "2020-03-26T12:38:34.058549",
+ "duration": 0.228663,
+ "end_time": "2020-03-26T13:21:56.611259",
"exception": false,
- "start_time": "2020-03-26T12:38:33.879961",
+ "start_time": "2020-03-26T13:21:56.382596",
"status": "completed"
},
"tags": []
@@ -283,10 +283,10 @@
"execution_count": 8,
"metadata": {
"papermill": {
- "duration": 0.027495,
- "end_time": "2020-03-26T12:38:34.102339",
+ "duration": 0.031145,
+ "end_time": "2020-03-26T13:21:56.658428",
"exception": false,
- "start_time": "2020-03-26T12:38:34.074844",
+ "start_time": "2020-03-26T13:21:56.627283",
"status": "completed"
},
"tags": []
@@ -305,10 +305,10 @@
"execution_count": 9,
"metadata": {
"papermill": {
- "duration": 0.076898,
- "end_time": "2020-03-26T12:38:34.188602",
+ "duration": 0.074596,
+ "end_time": "2020-03-26T13:21:56.744429",
"exception": false,
- "start_time": "2020-03-26T12:38:34.111704",
+ "start_time": "2020-03-26T13:21:56.669833",
"status": "completed"
},
"tags": []
@@ -449,18 +449,18 @@
"version": "3.7.3"
},
"papermill": {
- "duration": 2.475212,
- "end_time": "2020-03-26T12:38:34.517904",
+ "duration": 2.681112,
+ "end_time": "2020-03-26T13:21:57.202806",
"environment_variables": {},
"exception": null,
- "input_path": "notebooks/process/download-covidtracking-data.ipynb",
+ "input_path": "/tmp/k17s7jwl/notebooks/process/download-covidtracking-data.ipynb",
"output_path": "runs/download-covidtracking-data.runs.ipynb",
"parameters": {
- "PAPERMILL_INPUT_PATH": "notebooks/process/download-covidtracking-data.ipynb",
+ "PAPERMILL_INPUT_PATH": "/tmp/k17s7jwl/notebooks/process/download-covidtracking-data.ipynb",
"PAPERMILL_OUTPUT_PATH": "runs/download-covidtracking-data.runs.ipynb",
- "out_folder": "./data/covidtracking/"
+ "out_folder": "data/covidtracking"
},
- "start_time": "2020-03-26T12:38:32.042692",
+ "start_time": "2020-03-26T13:21:54.521694",
"version": "1.1.0"
}
},