diff --git a/.renku/workflow/414e8dd586a446e588db482c4fc88f09_papermill.cwl b/.renku/workflow/414e8dd586a446e588db482c4fc88f09_papermill.cwl
new file mode 100644
index 0000000000000000000000000000000000000000..988afcd830a1f9c81a2ca1b826ac4fbb0f595b33
--- /dev/null
+++ b/.renku/workflow/414e8dd586a446e588db482c4fc88f09_papermill.cwl
@@ -0,0 +1,137 @@
+arguments: []
+baseCommand:
+- papermill
+class: CommandLineTool
+cwlVersion: v1.0
+hints: []
+inputs:
+ input_1:
+ default: ts_folder
+ inputBinding:
+ position: 1
+ prefix: -p
+ separate: true
+ shellQuote: true
+ streamable: false
+ type: string
+ input_10:
+ default: runs/ToRates.run.ipynb
+ inputBinding:
+ position: 10
+ separate: true
+ shellQuote: true
+ streamable: false
+ type: string
+ input_2:
+ default:
+ class: Directory
+ listing: []
+ path: ../../data/covid-19_jhu-csse
+ inputBinding:
+ position: 2
+ separate: true
+ shellQuote: true
+ streamable: false
+ type: Directory
+ input_3:
+ default: wb_path
+ inputBinding:
+ position: 3
+ prefix: -p
+ separate: true
+ shellQuote: true
+ streamable: false
+ type: string
+ input_4:
+ default:
+ class: File
+ path: ../../data/worldbank/SP.POP.TOTL.zip
+ inputBinding:
+ position: 4
+ separate: true
+ shellQuote: true
+ streamable: false
+ type: File
+ input_5:
+ default: geodata_path
+ inputBinding:
+ position: 5
+ prefix: -p
+ separate: true
+ shellQuote: true
+ streamable: false
+ type: string
+ input_6:
+ default:
+ class: File
+ path: ../../data/geodata/geo_data.csv
+ inputBinding:
+ position: 6
+ separate: true
+ shellQuote: true
+ streamable: false
+ type: File
+ input_7:
+ default: out_folder
+ inputBinding:
+ position: 7
+ prefix: -p
+ separate: true
+ shellQuote: true
+ streamable: false
+ type: string
+ input_8:
+ default: data/covid-19_rates
+ inputBinding:
+ position: 8
+ separate: true
+ shellQuote: true
+ streamable: false
+ type: string
+ input_9:
+ default:
+ class: File
+ path: ../../notebooks/process/ToRates.ipynb
+ inputBinding:
+ position: 9
+ prefix: --inject-paths
+ separate: true
+ shellQuote: true
+ streamable: false
+ type: File
+outputs:
+ output_0:
+ outputBinding:
+ glob: $(inputs.input_10)
+ streamable: false
+ type: File
+ output_1:
+ outputBinding:
+ glob: $(inputs.input_8)
+ streamable: false
+ type: Directory
+permanentFailCodes: []
+requirements:
+- class: InlineJavascriptRequirement
+- class: InitialWorkDirRequirement
+ listing:
+ - entry: '$({"listing": [], "class": "Directory"})'
+ entryname: runs
+ writable: true
+ - entry: '$({"listing": [], "class": "Directory"})'
+ entryname: data/covid-19_rates
+ writable: true
+ - entry: $(inputs.input_2)
+ entryname: data/covid-19_jhu-csse
+ writable: false
+ - entry: $(inputs.input_4)
+ entryname: data/worldbank/SP.POP.TOTL.zip
+ writable: false
+ - entry: $(inputs.input_6)
+ entryname: data/geodata/geo_data.csv
+ writable: false
+ - entry: $(inputs.input_9)
+ entryname: notebooks/process/ToRates.ipynb
+ writable: false
+successCodes: []
+temporaryFailCodes: []
diff --git a/data/covid-19_rates/ts_rates_19-covid-confirmed.csv b/data/covid-19_rates/ts_rates_19-covid-confirmed.csv
index 7b5f02fe51aaaf65baebe04bd54484f86561947e..d5f8230902d6edf79202e29cd190de20d0096ef9 100644
--- a/data/covid-19_rates/ts_rates_19-covid-confirmed.csv
+++ b/data/covid-19_rates/ts_rates_19-covid-confirmed.csv
@@ -1,3 +1,3 @@
version https://git-lfs.github.com/spec/v1
-oid sha256:b8f2140f3579b87a0b898231e4791d3943454507ff79055747aee72ef38cb173
-size 87096
+oid sha256:9ae1fd02112a3f7f1f74c314625a7042c89de2f6df105dc4c13f53b3d00e8cd6
+size 104570
diff --git a/data/covid-19_rates/ts_rates_19-covid-deaths.csv b/data/covid-19_rates/ts_rates_19-covid-deaths.csv
index 14b7534f20ecd8eaf6985bf98fb36eef516fe967..be053acdb2cd682fc71ea08024df5e2d17f7088c 100644
--- a/data/covid-19_rates/ts_rates_19-covid-deaths.csv
+++ b/data/covid-19_rates/ts_rates_19-covid-deaths.csv
@@ -1,3 +1,3 @@
version https://git-lfs.github.com/spec/v1
-oid sha256:101e9885fce5564a2452250eabaca0929e1ebfb00f17d762c1064fdeaae3837a
-size 49944
+oid sha256:905ade4dbd24d54b75fcef4b21b2642b71cac902a4fc314d180880e7a5ebd499
+size 62770
diff --git a/data/covid-19_rates/ts_rates_19-covid-recovered.csv b/data/covid-19_rates/ts_rates_19-covid-recovered.csv
index 3914842abf31a1ea51925eddbb74d7b67e617692..b50338e950ace568358569adedf6a07c934e8141 100644
--- a/data/covid-19_rates/ts_rates_19-covid-recovered.csv
+++ b/data/covid-19_rates/ts_rates_19-covid-recovered.csv
@@ -1,3 +1,3 @@
version https://git-lfs.github.com/spec/v1
-oid sha256:5e501b13b10ffeee0fa4bed91482e1151ab37c8370548c668b1996b0869b5c5a
-size 62472
+oid sha256:9434e8bf57ebee68c6b69c85b78b9d84e2b4c6196fe0869299594c33f205e404
+size 76043
diff --git a/runs/ToRates.run.ipynb b/runs/ToRates.run.ipynb
index 2ab9a8b826121970d18cd31b939dd2810c444131..60c0a454cdc14cb0fc3cc710006fe09f7e88b1b2 100644
--- a/runs/ToRates.run.ipynb
+++ b/runs/ToRates.run.ipynb
@@ -4,10 +4,10 @@
"cell_type": "markdown",
"metadata": {
"papermill": {
- "duration": 0.019737,
- "end_time": "2020-03-20T09:14:21.387138",
+ "duration": 0.032494,
+ "end_time": "2020-03-25T13:55:04.106838",
"exception": false,
- "start_time": "2020-03-20T09:14:21.367401",
+ "start_time": "2020-03-25T13:55:04.074344",
"status": "completed"
},
"tags": []
@@ -21,10 +21,10 @@
"execution_count": 1,
"metadata": {
"papermill": {
- "duration": 0.344425,
- "end_time": "2020-03-20T09:14:21.745752",
+ "duration": 0.307799,
+ "end_time": "2020-03-25T13:55:04.426890",
"exception": false,
- "start_time": "2020-03-20T09:14:21.401327",
+ "start_time": "2020-03-25T13:55:04.119091",
"status": "completed"
},
"tags": []
@@ -40,10 +40,10 @@
"execution_count": 2,
"metadata": {
"papermill": {
- "duration": 0.028,
- "end_time": "2020-03-20T09:14:21.793663",
+ "duration": 0.024997,
+ "end_time": "2020-03-25T13:55:04.473087",
"exception": false,
- "start_time": "2020-03-20T09:14:21.765663",
+ "start_time": "2020-03-25T13:55:04.448090",
"status": "completed"
},
"tags": [
@@ -64,10 +64,10 @@
"execution_count": 3,
"metadata": {
"papermill": {
- "duration": 0.024974,
- "end_time": "2020-03-20T09:14:21.834058",
+ "duration": 0.022661,
+ "end_time": "2020-03-25T13:55:04.509511",
"exception": false,
- "start_time": "2020-03-20T09:14:21.809084",
+ "start_time": "2020-03-25T13:55:04.486850",
"status": "completed"
},
"tags": [
@@ -77,22 +77,22 @@
"outputs": [],
"source": [
"# Parameters\n",
- "PAPERMILL_INPUT_PATH = \"/tmp/99ksj1h9/notebooks/process/ToRates.ipynb\"\n",
+ "PAPERMILL_INPUT_PATH = \"notebooks/process/ToRates.ipynb\"\n",
"PAPERMILL_OUTPUT_PATH = \"runs/ToRates.run.ipynb\"\n",
- "ts_folder = \"/tmp/99ksj1h9/data/covid-19_jhu-csse\"\n",
- "wb_path = \"/tmp/99ksj1h9/data/worldbank/SP.POP.TOTL.zip\"\n",
- "geodata_path = \"/tmp/99ksj1h9/data/geodata/geo_data.csv\"\n",
- "out_folder = \"data/covid-19_rates\"\n"
+ "ts_folder = \"./data/covid-19_jhu-csse/\"\n",
+ "wb_path = \"./data/worldbank/SP.POP.TOTL.zip\"\n",
+ "geodata_path = \"./data/geodata/geo_data.csv\"\n",
+ "out_folder = \"./data/covid-19_rates/\"\n"
]
},
{
"cell_type": "markdown",
"metadata": {
"papermill": {
- "duration": 0.013897,
- "end_time": "2020-03-20T09:14:21.861189",
+ "duration": 0.010324,
+ "end_time": "2020-03-25T13:55:04.532118",
"exception": false,
- "start_time": "2020-03-20T09:14:21.847292",
+ "start_time": "2020-03-25T13:55:04.521794",
"status": "completed"
},
"tags": [
@@ -110,10 +110,10 @@
"execution_count": 4,
"metadata": {
"papermill": {
- "duration": 0.037703,
- "end_time": "2020-03-20T09:14:21.914653",
+ "duration": 0.029616,
+ "end_time": "2020-03-25T13:55:04.571972",
"exception": false,
- "start_time": "2020-03-20T09:14:21.876950",
+ "start_time": "2020-03-25T13:55:04.542356",
"status": "completed"
},
"tags": []
@@ -135,10 +135,10 @@
"execution_count": 5,
"metadata": {
"papermill": {
- "duration": 0.160725,
- "end_time": "2020-03-20T09:14:22.091386",
+ "duration": 0.139315,
+ "end_time": "2020-03-25T13:55:04.724324",
"exception": false,
- "start_time": "2020-03-20T09:14:21.930661",
+ "start_time": "2020-03-25T13:55:04.585009",
"status": "completed"
},
"tags": []
@@ -156,10 +156,10 @@
"cell_type": "markdown",
"metadata": {
"papermill": {
- "duration": 0.013485,
- "end_time": "2020-03-20T09:14:22.121911",
+ "duration": 0.011298,
+ "end_time": "2020-03-25T13:55:04.758899",
"exception": false,
- "start_time": "2020-03-20T09:14:22.108426",
+ "start_time": "2020-03-25T13:55:04.747601",
"status": "completed"
},
"tags": []
@@ -173,10 +173,10 @@
"execution_count": 6,
"metadata": {
"papermill": {
- "duration": 0.045236,
- "end_time": "2020-03-20T09:14:22.179994",
+ "duration": 0.046291,
+ "end_time": "2020-03-25T13:55:04.814885",
"exception": false,
- "start_time": "2020-03-20T09:14:22.134758",
+ "start_time": "2020-03-25T13:55:04.768594",
"status": "completed"
},
"tags": []
@@ -192,10 +192,10 @@
"cell_type": "markdown",
"metadata": {
"papermill": {
- "duration": 0.01244,
- "end_time": "2020-03-20T09:14:22.208872",
+ "duration": 0.011042,
+ "end_time": "2020-03-25T13:55:04.848202",
"exception": false,
- "start_time": "2020-03-20T09:14:22.196432",
+ "start_time": "2020-03-25T13:55:04.837160",
"status": "completed"
},
"tags": []
@@ -209,10 +209,10 @@
"execution_count": 7,
"metadata": {
"papermill": {
- "duration": 0.066727,
- "end_time": "2020-03-20T09:14:22.288534",
+ "duration": 0.070582,
+ "end_time": "2020-03-25T13:55:04.929280",
"exception": false,
- "start_time": "2020-03-20T09:14:22.221807",
+ "start_time": "2020-03-25T13:55:04.858698",
"status": "completed"
},
"tags": []
@@ -345,10 +345,10 @@
"cell_type": "markdown",
"metadata": {
"papermill": {
- "duration": 0.017214,
- "end_time": "2020-03-20T09:14:22.323770",
+ "duration": 0.011058,
+ "end_time": "2020-03-25T13:55:04.961018",
"exception": false,
- "start_time": "2020-03-20T09:14:22.306556",
+ "start_time": "2020-03-25T13:55:04.949960",
"status": "completed"
},
"tags": []
@@ -362,10 +362,10 @@
"execution_count": 8,
"metadata": {
"papermill": {
- "duration": 0.039771,
- "end_time": "2020-03-20T09:14:22.376854",
+ "duration": 0.045924,
+ "end_time": "2020-03-25T13:55:05.017994",
"exception": false,
- "start_time": "2020-03-20T09:14:22.337083",
+ "start_time": "2020-03-25T13:55:04.972070",
"status": "completed"
},
"tags": []
@@ -394,10 +394,10 @@
"execution_count": 9,
"metadata": {
"papermill": {
- "duration": 0.030032,
- "end_time": "2020-03-20T09:14:22.426341",
+ "duration": 0.024519,
+ "end_time": "2020-03-25T13:55:05.063028",
"exception": false,
- "start_time": "2020-03-20T09:14:22.396309",
+ "start_time": "2020-03-25T13:55:05.038509",
"status": "completed"
},
"tags": []
@@ -412,10 +412,10 @@
"cell_type": "markdown",
"metadata": {
"papermill": {
- "duration": 0.015764,
- "end_time": "2020-03-20T09:14:22.459526",
+ "duration": 0.013202,
+ "end_time": "2020-03-25T13:55:05.094653",
"exception": false,
- "start_time": "2020-03-20T09:14:22.443762",
+ "start_time": "2020-03-25T13:55:05.081451",
"status": "completed"
},
"tags": []
@@ -429,10 +429,10 @@
"execution_count": 10,
"metadata": {
"papermill": {
- "duration": 0.046845,
- "end_time": "2020-03-20T09:14:22.521782",
+ "duration": 0.057047,
+ "end_time": "2020-03-25T13:55:05.164566",
"exception": false,
- "start_time": "2020-03-20T09:14:22.474937",
+ "start_time": "2020-03-25T13:55:05.107519",
"status": "completed"
},
"tags": []
@@ -461,8 +461,8 @@
" <th></th>\n",
" <th></th>\n",
" <th></th>\n",
- " <th>2020-03-18 00:00:00</th>\n",
- " <th>2020-03-19 00:00:00</th>\n",
+ " <th>2020-03-22 00:00:00</th>\n",
+ " <th>2020-03-23 00:00:00</th>\n",
" </tr>\n",
" <tr>\n",
" <th>Country/Region</th>\n",
@@ -474,105 +474,213 @@
" </thead>\n",
" <tbody>\n",
" <tr>\n",
+ " <th>Cape Verde</th>\n",
+ " <th>-23.6167</th>\n",
+ " <th>15.1111</th>\n",
+ " <td>1</td>\n",
+ " <td>0.0</td>\n",
+ " </tr>\n",
+ " <tr>\n",
" <th>Congo (Brazzaville)</th>\n",
" <th>21.7587</th>\n",
" <th>-4.0383</th>\n",
- " <td>1</td>\n",
" <td>3</td>\n",
+ " <td>3.0</td>\n",
" </tr>\n",
" <tr>\n",
" <th>Congo (Kinshasa)</th>\n",
" <th>21.7587</th>\n",
" <th>-4.0383</th>\n",
- " <td>4</td>\n",
- " <td>14</td>\n",
+ " <td>30</td>\n",
+ " <td>30.0</td>\n",
" </tr>\n",
" <tr>\n",
" <th>Cruise Ship</th>\n",
" <th>139.6380</th>\n",
" <th>35.4437</th>\n",
" <td>712</td>\n",
- " <td>712</td>\n",
+ " <td>712.0</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>East Timor</th>\n",
+ " <th>125.5600</th>\n",
+ " <th>-8.5500</th>\n",
+ " <td>1</td>\n",
+ " <td>0.0</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>French Guiana</th>\n",
+ " <th>-53.1258</th>\n",
+ " <th>3.9339</th>\n",
+ " <td>0</td>\n",
+ " <td>18.0</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>Guadeloupe</th>\n",
+ " <th>-61.5510</th>\n",
+ " <th>16.2650</th>\n",
+ " <td>0</td>\n",
+ " <td>56.0</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>Guernsey</th>\n",
+ " <th>-2.5800</th>\n",
+ " <th>49.4500</th>\n",
+ " <td>0</td>\n",
+ " <td>0.0</td>\n",
" </tr>\n",
" <tr>\n",
" <th>Holy See</th>\n",
" <th>12.4534</th>\n",
" <th>41.9029</th>\n",
" <td>1</td>\n",
- " <td>1</td>\n",
+ " <td>1.0</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>Jersey</th>\n",
+ " <th>-2.1100</th>\n",
+ " <th>49.1900</th>\n",
+ " <td>0</td>\n",
+ " <td>0.0</td>\n",
" </tr>\n",
" <tr>\n",
" <th>Kyrgyzstan</th>\n",
" <th>74.7661</th>\n",
" <th>41.2044</th>\n",
- " <td>3</td>\n",
- " <td>3</td>\n",
+ " <td>14</td>\n",
+ " <td>14.0</td>\n",
" </tr>\n",
" <tr>\n",
" <th>Martinique</th>\n",
" <th>-61.0242</th>\n",
" <th>14.6415</th>\n",
- " <td>19</td>\n",
- " <td>23</td>\n",
+ " <td>37</td>\n",
+ " <td>37.0</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>Mayotte</th>\n",
+ " <th>45.1662</th>\n",
+ " <th>-12.8275</th>\n",
+ " <td>0</td>\n",
+ " <td>11.0</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>Republic of the Congo</th>\n",
+ " <th>15.5560</th>\n",
+ " <th>-1.4400</th>\n",
+ " <td>0</td>\n",
+ " <td>0.0</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>Reunion</th>\n",
+ " <th>55.5364</th>\n",
+ " <th>-21.1151</th>\n",
+ " <td>0</td>\n",
+ " <td>47.0</td>\n",
" </tr>\n",
" <tr>\n",
" <th>Saint Lucia</th>\n",
" <th>-60.9789</th>\n",
" <th>13.9094</th>\n",
" <td>2</td>\n",
- " <td>2</td>\n",
+ " <td>2.0</td>\n",
" </tr>\n",
" <tr>\n",
" <th>Saint Vincent and the Grenadines</th>\n",
" <th>-61.2872</th>\n",
" <th>12.9843</th>\n",
" <td>1</td>\n",
+ " <td>1.0</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>Syria</th>\n",
+ " <th>38.9968</th>\n",
+ " <th>34.8021</th>\n",
" <td>1</td>\n",
+ " <td>1.0</td>\n",
" </tr>\n",
" <tr>\n",
" <th>Taiwan*</th>\n",
" <th>121.0000</th>\n",
" <th>23.7000</th>\n",
- " <td>100</td>\n",
- " <td>108</td>\n",
+ " <td>169</td>\n",
+ " <td>169.0</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>The Bahamas</th>\n",
+ " <th>-76.0000</th>\n",
+ " <th>24.2500</th>\n",
+ " <td>0</td>\n",
+ " <td>0.0</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>The Gambia</th>\n",
+ " <th>-16.6000</th>\n",
+ " <th>13.4667</th>\n",
+ " <td>0</td>\n",
+ " <td>0.0</td>\n",
" </tr>\n",
" <tr>\n",
" <th>Venezuela</th>\n",
" <th>-66.5897</th>\n",
" <th>6.4238</th>\n",
- " <td>36</td>\n",
- " <td>42</td>\n",
+ " <td>70</td>\n",
+ " <td>70.0</td>\n",
" </tr>\n",
" </tbody>\n",
"</table>\n",
"</div>"
],
"text/plain": [
- " 2020-03-18 00:00:00 \\\n",
+ " 2020-03-22 00:00:00 \\\n",
"Country/Region Long Lat \n",
- "Congo (Brazzaville) 21.7587 -4.0383 1 \n",
- "Congo (Kinshasa) 21.7587 -4.0383 4 \n",
+ "Cape Verde -23.6167 15.1111 1 \n",
+ "Congo (Brazzaville) 21.7587 -4.0383 3 \n",
+ "Congo (Kinshasa) 21.7587 -4.0383 30 \n",
"Cruise Ship 139.6380 35.4437 712 \n",
+ "East Timor 125.5600 -8.5500 1 \n",
+ "French Guiana -53.1258 3.9339 0 \n",
+ "Guadeloupe -61.5510 16.2650 0 \n",
+ "Guernsey -2.5800 49.4500 0 \n",
"Holy See 12.4534 41.9029 1 \n",
- "Kyrgyzstan 74.7661 41.2044 3 \n",
- "Martinique -61.0242 14.6415 19 \n",
+ "Jersey -2.1100 49.1900 0 \n",
+ "Kyrgyzstan 74.7661 41.2044 14 \n",
+ "Martinique -61.0242 14.6415 37 \n",
+ "Mayotte 45.1662 -12.8275 0 \n",
+ "Republic of the Congo 15.5560 -1.4400 0 \n",
+ "Reunion 55.5364 -21.1151 0 \n",
"Saint Lucia -60.9789 13.9094 2 \n",
"Saint Vincent and the Grenadines -61.2872 12.9843 1 \n",
- "Taiwan* 121.0000 23.7000 100 \n",
- "Venezuela -66.5897 6.4238 36 \n",
+ "Syria 38.9968 34.8021 1 \n",
+ "Taiwan* 121.0000 23.7000 169 \n",
+ "The Bahamas -76.0000 24.2500 0 \n",
+ "The Gambia -16.6000 13.4667 0 \n",
+ "Venezuela -66.5897 6.4238 70 \n",
"\n",
- " 2020-03-19 00:00:00 \n",
+ " 2020-03-23 00:00:00 \n",
"Country/Region Long Lat \n",
- "Congo (Brazzaville) 21.7587 -4.0383 3 \n",
- "Congo (Kinshasa) 21.7587 -4.0383 14 \n",
- "Cruise Ship 139.6380 35.4437 712 \n",
- "Holy See 12.4534 41.9029 1 \n",
- "Kyrgyzstan 74.7661 41.2044 3 \n",
- "Martinique -61.0242 14.6415 23 \n",
- "Saint Lucia -60.9789 13.9094 2 \n",
- "Saint Vincent and the Grenadines -61.2872 12.9843 1 \n",
- "Taiwan* 121.0000 23.7000 108 \n",
- "Venezuela -66.5897 6.4238 42 "
+ "Cape Verde -23.6167 15.1111 0.0 \n",
+ "Congo (Brazzaville) 21.7587 -4.0383 3.0 \n",
+ "Congo (Kinshasa) 21.7587 -4.0383 30.0 \n",
+ "Cruise Ship 139.6380 35.4437 712.0 \n",
+ "East Timor 125.5600 -8.5500 0.0 \n",
+ "French Guiana -53.1258 3.9339 18.0 \n",
+ "Guadeloupe -61.5510 16.2650 56.0 \n",
+ "Guernsey -2.5800 49.4500 0.0 \n",
+ "Holy See 12.4534 41.9029 1.0 \n",
+ "Jersey -2.1100 49.1900 0.0 \n",
+ "Kyrgyzstan 74.7661 41.2044 14.0 \n",
+ "Martinique -61.0242 14.6415 37.0 \n",
+ "Mayotte 45.1662 -12.8275 11.0 \n",
+ "Republic of the Congo 15.5560 -1.4400 0.0 \n",
+ "Reunion 55.5364 -21.1151 47.0 \n",
+ "Saint Lucia -60.9789 13.9094 2.0 \n",
+ "Saint Vincent and the Grenadines -61.2872 12.9843 1.0 \n",
+ "Syria 38.9968 34.8021 1.0 \n",
+ "Taiwan* 121.0000 23.7000 169.0 \n",
+ "The Bahamas -76.0000 24.2500 0.0 \n",
+ "The Gambia -16.6000 13.4667 0.0 \n",
+ "Venezuela -66.5897 6.4238 70.0 "
]
},
"execution_count": 10,
@@ -590,10 +698,10 @@
"cell_type": "markdown",
"metadata": {
"papermill": {
- "duration": 0.021182,
- "end_time": "2020-03-20T09:14:22.566561",
+ "duration": 0.012705,
+ "end_time": "2020-03-25T13:55:05.196368",
"exception": false,
- "start_time": "2020-03-20T09:14:22.545379",
+ "start_time": "2020-03-25T13:55:05.183663",
"status": "completed"
},
"tags": []
@@ -607,10 +715,10 @@
"execution_count": 11,
"metadata": {
"papermill": {
- "duration": 0.050686,
- "end_time": "2020-03-20T09:14:22.640332",
+ "duration": 0.041453,
+ "end_time": "2020-03-25T13:55:05.249421",
"exception": false,
- "start_time": "2020-03-20T09:14:22.589646",
+ "start_time": "2020-03-25T13:55:05.207968",
"status": "completed"
},
"tags": []
@@ -624,10 +732,10 @@
"cell_type": "markdown",
"metadata": {
"papermill": {
- "duration": 0.01352,
- "end_time": "2020-03-20T09:14:22.673904",
+ "duration": 0.012499,
+ "end_time": "2020-03-25T13:55:05.286397",
"exception": false,
- "start_time": "2020-03-20T09:14:22.660384",
+ "start_time": "2020-03-25T13:55:05.273898",
"status": "completed"
},
"tags": []
@@ -641,10 +749,10 @@
"execution_count": 12,
"metadata": {
"papermill": {
- "duration": 0.060982,
- "end_time": "2020-03-20T09:14:22.748645",
+ "duration": 0.067215,
+ "end_time": "2020-03-25T13:55:05.366227",
"exception": false,
- "start_time": "2020-03-20T09:14:22.687663",
+ "start_time": "2020-03-25T13:55:05.299012",
"status": "completed"
},
"tags": []
@@ -698,6 +806,58 @@
" </thead>\n",
" <tbody>\n",
" <tr>\n",
+ " <th>Cape Verde</th>\n",
+ " <td>Cape Verde</td>\n",
+ " <td>Cape Verde</td>\n",
+ " <td>Africa</td>\n",
+ " <td>Western Africa</td>\n",
+ " <td>Sub-Saharan Africa</td>\n",
+ " <td>429474</td>\n",
+ " <td>1626.0</td>\n",
+ " <td>4. Lower middle income</td>\n",
+ " <td>-23.959888</td>\n",
+ " <td>15.955233</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>Guernsey</th>\n",
+ " <td>Guernsey</td>\n",
+ " <td>Guernsey</td>\n",
+ " <td>Europe</td>\n",
+ " <td>Northern Europe</td>\n",
+ " <td>Europe & Central Asia</td>\n",
+ " <td>68633</td>\n",
+ " <td>2742.0</td>\n",
+ " <td>2. High income: nonOECD</td>\n",
+ " <td>-2.572391</td>\n",
+ " <td>49.468098</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>The Gambia</th>\n",
+ " <td>Gambia</td>\n",
+ " <td>The Gambia</td>\n",
+ " <td>Africa</td>\n",
+ " <td>Western Africa</td>\n",
+ " <td>Sub-Saharan Africa</td>\n",
+ " <td>1782893</td>\n",
+ " <td>2272.0</td>\n",
+ " <td>5. Low income</td>\n",
+ " <td>-15.396013</td>\n",
+ " <td>13.449652</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>Jersey</th>\n",
+ " <td>Jersey</td>\n",
+ " <td>Jersey</td>\n",
+ " <td>Europe</td>\n",
+ " <td>Northern Europe</td>\n",
+ " <td>Europe & Central Asia</td>\n",
+ " <td>91626</td>\n",
+ " <td>5100.0</td>\n",
+ " <td>2. High income: nonOECD</td>\n",
+ " <td>-2.126899</td>\n",
+ " <td>49.218374</td>\n",
+ " </tr>\n",
+ " <tr>\n",
" <th>Kyrgyzstan</th>\n",
" <td>Kyrgyzstan</td>\n",
" <td>Kyrgyzstan</td>\n",
@@ -724,6 +884,19 @@
" <td>13.894795</td>\n",
" </tr>\n",
" <tr>\n",
+ " <th>Syria</th>\n",
+ " <td>Syria</td>\n",
+ " <td>Syria</td>\n",
+ " <td>Asia</td>\n",
+ " <td>Western Asia</td>\n",
+ " <td>Middle East & North Africa</td>\n",
+ " <td>20178485</td>\n",
+ " <td>98830.0</td>\n",
+ " <td>4. Lower middle income</td>\n",
+ " <td>38.507882</td>\n",
+ " <td>35.025474</td>\n",
+ " </tr>\n",
+ " <tr>\n",
" <th>Taiwan*</th>\n",
" <td>Taiwan</td>\n",
" <td>Taiwan</td>\n",
@@ -769,48 +942,78 @@
"text/plain": [
" name \\\n",
"name_jhu \n",
+ "Cape Verde Cape Verde \n",
+ "Guernsey Guernsey \n",
+ "The Gambia Gambia \n",
+ "Jersey Jersey \n",
"Kyrgyzstan Kyrgyzstan \n",
"Saint Lucia Saint Lucia \n",
+ "Syria Syria \n",
"Taiwan* Taiwan \n",
"Saint Vincent and the Grenadines St. Vin. and Gren. \n",
"Venezuela Venezuela \n",
"\n",
" name_long region_un \\\n",
"name_jhu \n",
+ "Cape Verde Cape Verde Africa \n",
+ "Guernsey Guernsey Europe \n",
+ "The Gambia The Gambia Africa \n",
+ "Jersey Jersey Europe \n",
"Kyrgyzstan Kyrgyzstan Asia \n",
"Saint Lucia Saint Lucia Americas \n",
+ "Syria Syria Asia \n",
"Taiwan* Taiwan Asia \n",
"Saint Vincent and the Grenadines Saint Vincent and the Grenadines Americas \n",
"Venezuela Venezuela Americas \n",
"\n",
- " subregion region_wb \\\n",
- "name_jhu \n",
- "Kyrgyzstan Central Asia Europe & Central Asia \n",
- "Saint Lucia Caribbean Latin America & Caribbean \n",
- "Taiwan* Eastern Asia East Asia & Pacific \n",
- "Saint Vincent and the Grenadines Caribbean Latin America & Caribbean \n",
- "Venezuela South America Latin America & Caribbean \n",
+ " subregion region_wb \\\n",
+ "name_jhu \n",
+ "Cape Verde Western Africa Sub-Saharan Africa \n",
+ "Guernsey Northern Europe Europe & Central Asia \n",
+ "The Gambia Western Africa Sub-Saharan Africa \n",
+ "Jersey Northern Europe Europe & Central Asia \n",
+ "Kyrgyzstan Central Asia Europe & Central Asia \n",
+ "Saint Lucia Caribbean Latin America & Caribbean \n",
+ "Syria Western Asia Middle East & North Africa \n",
+ "Taiwan* Eastern Asia East Asia & Pacific \n",
+ "Saint Vincent and the Grenadines Caribbean Latin America & Caribbean \n",
+ "Venezuela South America Latin America & Caribbean \n",
"\n",
" pop_est gdp_md_est \\\n",
"name_jhu \n",
+ "Cape Verde 429474 1626.0 \n",
+ "Guernsey 68633 2742.0 \n",
+ "The Gambia 1782893 2272.0 \n",
+ "Jersey 91626 5100.0 \n",
"Kyrgyzstan 5431747 11610.0 \n",
"Saint Lucia 160267 1778.0 \n",
+ "Syria 20178485 98830.0 \n",
"Taiwan* 22974347 712000.0 \n",
"Saint Vincent and the Grenadines 104574 1070.0 \n",
"Venezuela 26814843 357400.0 \n",
"\n",
" income_grp Longitude \\\n",
"name_jhu \n",
+ "Cape Verde 4. Lower middle income -23.959888 \n",
+ "Guernsey 2. High income: nonOECD -2.572391 \n",
+ "The Gambia 5. Low income -15.396013 \n",
+ "Jersey 2. High income: nonOECD -2.126899 \n",
"Kyrgyzstan 5. Low income 74.541655 \n",
"Saint Lucia 3. Upper middle income -60.969699 \n",
+ "Syria 4. Lower middle income 38.507882 \n",
"Taiwan* 2. High income: nonOECD 120.954273 \n",
"Saint Vincent and the Grenadines 3. Upper middle income -61.201297 \n",
"Venezuela 3. Upper middle income -66.181841 \n",
"\n",
" Latitude \n",
"name_jhu \n",
+ "Cape Verde 15.955233 \n",
+ "Guernsey 49.468098 \n",
+ "The Gambia 13.449652 \n",
+ "Jersey 49.218374 \n",
"Kyrgyzstan 41.462219 \n",
"Saint Lucia 13.894795 \n",
+ "Syria 35.025474 \n",
"Taiwan* 23.753993 \n",
"Saint Vincent and the Grenadines 13.224723 \n",
"Venezuela 7.124224 "
@@ -834,10 +1037,10 @@
"cell_type": "markdown",
"metadata": {
"papermill": {
- "duration": 0.013999,
- "end_time": "2020-03-20T09:14:22.779092",
+ "duration": 0.012964,
+ "end_time": "2020-03-25T13:55:05.402092",
"exception": false,
- "start_time": "2020-03-20T09:14:22.765093",
+ "start_time": "2020-03-25T13:55:05.389128",
"status": "completed"
},
"tags": []
@@ -851,10 +1054,10 @@
"execution_count": 13,
"metadata": {
"papermill": {
- "duration": 0.043702,
- "end_time": "2020-03-20T09:14:22.837331",
+ "duration": 0.172521,
+ "end_time": "2020-03-25T13:55:05.587275",
"exception": false,
- "start_time": "2020-03-20T09:14:22.793629",
+ "start_time": "2020-03-25T13:55:05.414754",
"status": "completed"
},
"tags": []
@@ -879,10 +1082,10 @@
"execution_count": 14,
"metadata": {
"papermill": {
- "duration": 0.083012,
- "end_time": "2020-03-20T09:14:22.939277",
+ "duration": 0.078266,
+ "end_time": "2020-03-25T13:55:05.678115",
"exception": false,
- "start_time": "2020-03-20T09:14:22.856265",
+ "start_time": "2020-03-25T13:55:05.599849",
"status": "completed"
},
"tags": []
@@ -915,21 +1118,21 @@
"version": "3.7.3"
},
"papermill": {
- "duration": 2.769685,
- "end_time": "2020-03-20T09:14:23.270979",
+ "duration": 2.775622,
+ "end_time": "2020-03-25T13:55:06.012085",
"environment_variables": {},
"exception": null,
- "input_path": "/tmp/99ksj1h9/notebooks/process/ToRates.ipynb",
+ "input_path": "notebooks/process/ToRates.ipynb",
"output_path": "runs/ToRates.run.ipynb",
"parameters": {
- "PAPERMILL_INPUT_PATH": "/tmp/99ksj1h9/notebooks/process/ToRates.ipynb",
+ "PAPERMILL_INPUT_PATH": "notebooks/process/ToRates.ipynb",
"PAPERMILL_OUTPUT_PATH": "runs/ToRates.run.ipynb",
- "geodata_path": "/tmp/99ksj1h9/data/geodata/geo_data.csv",
- "out_folder": "data/covid-19_rates",
- "ts_folder": "/tmp/99ksj1h9/data/covid-19_jhu-csse",
- "wb_path": "/tmp/99ksj1h9/data/worldbank/SP.POP.TOTL.zip"
+ "geodata_path": "./data/geodata/geo_data.csv",
+ "out_folder": "./data/covid-19_rates/",
+ "ts_folder": "./data/covid-19_jhu-csse/",
+ "wb_path": "./data/worldbank/SP.POP.TOTL.zip"
},
- "start_time": "2020-03-20T09:14:20.501294",
+ "start_time": "2020-03-25T13:55:03.236463",
"version": "1.1.0"
}
},