diff --git a/notebooks/Dashboard.ipynb b/notebooks/Dashboard.ipynb
index 695dac12079eda2228aba10d8eea006dfae016ca..6888426e0e5bd1e79c1718209829c87129731aca 100644
--- a/notebooks/Dashboard.ipynb
+++ b/notebooks/Dashboard.ipynb
@@ -2,7 +2,7 @@
"cells": [
{
"cell_type": "code",
- "execution_count": null,
+ "execution_count": 1,
"metadata": {},
"outputs": [],
"source": [
@@ -13,7 +13,7 @@
},
{
"cell_type": "code",
- "execution_count": null,
+ "execution_count": 2,
"metadata": {
"tags": [
"parameters"
@@ -30,7 +30,7 @@
},
{
"cell_type": "code",
- "execution_count": null,
+ "execution_count": 3,
"metadata": {},
"outputs": [],
"source": [
@@ -39,7 +39,7 @@
},
{
"cell_type": "code",
- "execution_count": null,
+ "execution_count": 4,
"metadata": {},
"outputs": [],
"source": [
@@ -60,7 +60,7 @@
},
{
"cell_type": "code",
- "execution_count": null,
+ "execution_count": 5,
"metadata": {},
"outputs": [],
"source": [
@@ -81,7 +81,7 @@
},
{
"cell_type": "code",
- "execution_count": null,
+ "execution_count": 6,
"metadata": {},
"outputs": [],
"source": [
@@ -93,7 +93,7 @@
},
{
"cell_type": "code",
- "execution_count": null,
+ "execution_count": 7,
"metadata": {},
"outputs": [],
"source": [
@@ -119,9 +119,22 @@
},
{
"cell_type": "code",
- "execution_count": null,
+ "execution_count": 8,
"metadata": {},
- "outputs": [],
+ "outputs": [
+ {
+ "data": {
+ "text/html": [
+ "<em>Data up to Mar 14 2020; countries with 100 or more confirmed cases.</em>"
+ ],
+ "text/plain": [
+ "<IPython.core.display.HTML object>"
+ ]
+ },
+ "metadata": {},
+ "output_type": "display_data"
+ }
+ ],
"source": [
"data_ts = jhu_frames_map['confirmed'].iloc[:,-1].name.strftime(\"%b %d %Y\")\n",
"display(HTML(f\"<em>Data up to {data_ts}; countries with 100 or more confirmed cases.</em>\"))"
@@ -136,7 +149,7 @@
},
{
"cell_type": "code",
- "execution_count": null,
+ "execution_count": 9,
"metadata": {},
"outputs": [],
"source": [
@@ -146,7 +159,7 @@
},
{
"cell_type": "code",
- "execution_count": null,
+ "execution_count": 24,
"metadata": {},
"outputs": [],
"source": [
@@ -175,7 +188,7 @@
},
{
"cell_type": "code",
- "execution_count": null,
+ "execution_count": 19,
"metadata": {},
"outputs": [],
"source": [
@@ -210,9 +223,85 @@
},
{
"cell_type": "code",
- "execution_count": null,
+ "execution_count": 20,
"metadata": {},
- "outputs": [],
+ "outputs": [
+ {
+ "data": {
+ "text/html": [
+ "\n",
+ "<div id=\"altair-viz-c4db865973fa4ab1b0a16c6b2f5f366e\"></div>\n",
+ "<script type=\"text/javascript\">\n",
+ " (function(spec, embedOpt){\n",
+ " const outputDiv = document.getElementById(\"altair-viz-c4db865973fa4ab1b0a16c6b2f5f366e\");\n",
+ " const paths = {\n",
+ " \"vega\": \"https://cdn.jsdelivr.net/npm//vega@5?noext\",\n",
+ " \"vega-lib\": \"https://cdn.jsdelivr.net/npm//vega-lib?noext\",\n",
+ " \"vega-lite\": \"https://cdn.jsdelivr.net/npm//vega-lite@4.0.2?noext\",\n",
+ " \"vega-embed\": \"https://cdn.jsdelivr.net/npm//vega-embed@6?noext\",\n",
+ " };\n",
+ "\n",
+ " function loadScript(lib) {\n",
+ " return new Promise(function(resolve, reject) {\n",
+ " var s = document.createElement('script');\n",
+ " s.src = paths[lib];\n",
+ " s.async = true;\n",
+ " s.onload = () => resolve(paths[lib]);\n",
+ " s.onerror = () => reject(`Error loading script: ${paths[lib]}`);\n",
+ " document.getElementsByTagName(\"head\")[0].appendChild(s);\n",
+ " });\n",
+ " }\n",
+ "\n",
+ " function showError(err) {\n",
+ " outputDiv.innerHTML = `<div class=\"error\" style=\"color:red;\">${err}</div>`;\n",
+ " throw err;\n",
+ " }\n",
+ "\n",
+ " function displayChart(vegaEmbed) {\n",
+ " vegaEmbed(outputDiv, spec, embedOpt)\n",
+ " .catch(err => showError(`Javascript Error: ${err.message}<br>This usually means there's a typo in your chart specification. See the javascript console for the full traceback.`));\n",
+ " }\n",
+ "\n",
+ " if(typeof define === \"function\" && define.amd) {\n",
+ " requirejs.config({paths});\n",
+ " require([\"vega-embed\"], displayChart, err => showError(`Error loading script: ${err.message}`));\n",
+ " } else if (typeof vegaEmbed === \"function\") {\n",
+ " displayChart(vegaEmbed);\n",
+ " } else {\n",
+ " loadScript(\"vega\")\n",
+ " .then(() => loadScript(\"vega-lite\"))\n",
+ " .then(() => loadScript(\"vega-embed\"))\n",
+ " .catch(showError)\n",
+ " .then(() => displayChart(vegaEmbed));\n",
+ " }\n",
+ " })({\"config\": {\"view\": {\"continuousWidth\": 400, \"continuousHeight\": 300, \"stroke\": null}}, \"layer\": [{\"data\": {\"sphere\": true}, \"mark\": {\"type\": \"geoshape\", \"fill\": \"#cae6ef\"}}, {\"data\": {\"graticule\": true}, \"mark\": {\"type\": \"geoshape\", \"stroke\": \"white\", \"strokeWidth\": 0.5}}, {\"data\": {\"url\": \"https://vega.github.io/vega-datasets/data/world-110m.json\", \"format\": {\"feature\": \"countries\", \"type\": \"topojson\"}}, \"mark\": {\"type\": \"geoshape\", \"fill\": \"#dddddd\", \"stroke\": \"#aaaaaa\"}}, {\"data\": {\"name\": \"data-78f0aee81c818a7c0bb35bad1a0ca406\"}, \"mark\": {\"type\": \"circle\", \"opacity\": 0.6}, \"encoding\": {\"color\": {\"value\": \"steelblue\"}, \"latitude\": {\"field\": \"Lat\", \"type\": \"quantitative\"}, \"longitude\": {\"field\": \"Long\", \"type\": \"quantitative\"}, \"size\": {\"type\": \"quantitative\", \"field\": \"Confirmed/100k\", \"title\": \"Cases\"}, \"tooltip\": [{\"type\": \"nominal\", \"field\": \"Country/Region\"}, {\"type\": \"quantitative\", \"field\": \"Confirmed\"}, {\"type\": \"quantitative\", \"field\": \"Deaths\"}, {\"type\": \"quantitative\", \"field\": \"Recovered\"}, {\"type\": \"quantitative\", \"field\": \"Confirmed/100k\"}, {\"type\": \"quantitative\", \"field\": \"Deaths/100k\"}, {\"type\": \"quantitative\", \"field\": \"Recovered/100k\"}]}}], \"height\": 400, \"projection\": {\"type\": \"naturalEarth1\"}, \"title\": \"Confirmed cases per 100k inhabitants\", \"width\": 600, \"$schema\": \"https://vega.github.io/schema/vega-lite/v4.0.2.json\", \"datasets\": {\"data-78f0aee81c818a7c0bb35bad1a0ca406\": [{\"Country/Region\": \"Australia\", \"Confirmed/100k\": 1.000305333199906, \"Deaths/100k\": 0.012003663998398872, \"Recovered/100k\": 0.09202809065439137, \"Confirmed\": 250.0, \"Deaths\": 3.0, \"Recovered\": 23.0, \"Long\": 134.49100008, \"Lat\": -25.73288704, \"Region\": \"Oceania\"}, {\"Country/Region\": \"Austria\", \"Confirmed/100k\": 7.403608688423027, \"Deaths/100k\": 0.01130321937163821, \"Recovered/100k\": 0.06781931622982926, \"Confirmed\": 655.0, \"Deaths\": 1.0, \"Recovered\": 6.0, \"Long\": 14.1264761, \"Lat\": 47.58549439, \"Region\": \"Europe\"}, {\"Country/Region\": \"Bahrain\", \"Confirmed/100k\": 13.380577391029535, \"Deaths/100k\": 0.0, \"Recovered/100k\": 2.8035495485966644, \"Confirmed\": 210.0, \"Deaths\": 0.0, \"Recovered\": 44.0, \"Long\": 50.54196932, \"Lat\": 26.04205135, \"Region\": \"Asia\"}, {\"Country/Region\": \"Belgium\", \"Confirmed/100k\": 6.0321826135162215, \"Deaths/100k\": 0.035019928090079665, \"Recovered/100k\": 0.008754982022519914, \"Confirmed\": 689.0, \"Deaths\": 4.0, \"Recovered\": 1.0, \"Long\": 4.64065114, \"Lat\": 50.63981576, \"Region\": \"Europe\"}, {\"Country/Region\": \"Brazil\", \"Confirmed/100k\": 0.07208692453324421, \"Deaths/100k\": 0.0, \"Recovered/100k\": 0.0, \"Confirmed\": 151.0, \"Deaths\": 0.0, \"Recovered\": 0.0, \"Long\": -53.09783113, \"Lat\": -10.78777702, \"Region\": \"Americas\"}, {\"Country/Region\": \"Canada\", \"Confirmed/100k\": 0.53428524615007, \"Deaths/100k\": 0.002698410334091263, \"Recovered/100k\": 0.021587282672730104, \"Confirmed\": 198.0, \"Deaths\": 1.0, \"Recovered\": 8.0, \"Long\": -98.30777028, \"Lat\": 61.36206324, \"Region\": \"Americas\"}, {\"Country/Region\": \"China\", \"Confirmed/100k\": 5.814264071284455, \"Deaths/100k\": 0.2292619531423894, \"Recovered/100k\": 4.7144816296051655, \"Confirmed\": 80977.0, \"Deaths\": 3193.0, \"Recovered\": 65660.0, \"Long\": 103.81907349, \"Lat\": 36.56176546, \"Region\": \"Asia\"}, {\"Country/Region\": \"Czechia\", \"Confirmed/100k\": 1.7787071810361583, \"Deaths/100k\": 0.0, \"Recovered/100k\": 0.0, \"Confirmed\": 189.0, \"Deaths\": 0.0, \"Recovered\": 0.0, \"Long\": 15.31240163, \"Lat\": 49.73341233, \"Region\": \"Europe\"}, {\"Country/Region\": \"Denmark\", \"Confirmed/100k\": 14.420142938804432, \"Deaths/100k\": 0.01724897480718234, \"Recovered/100k\": 0.01724897480718234, \"Confirmed\": 836.0, \"Deaths\": 1.0, \"Recovered\": 1.0, \"Long\": 10.02800992, \"Lat\": 55.98125296, \"Region\": \"Europe\"}, {\"Country/Region\": \"Egypt\", \"Confirmed/100k\": 0.11074580236578434, \"Deaths/100k\": 0.002032033070931823, \"Recovered/100k\": 0.02743244645757961, \"Confirmed\": 109.0, \"Deaths\": 2.0, \"Recovered\": 27.0, \"Long\": 29.86190099, \"Lat\": 26.49593311, \"Region\": \"Africa\"}, {\"Country/Region\": \"Estonia\", \"Confirmed/100k\": 8.706290635665205, \"Deaths/100k\": 0.0, \"Recovered/100k\": 0.0, \"Confirmed\": 115.0, \"Deaths\": 0.0, \"Recovered\": 0.0, \"Long\": 25.54248537, \"Lat\": 58.67192972, \"Region\": \"Europe\"}, {\"Country/Region\": \"Finland\", \"Confirmed/100k\": 4.077527387392285, \"Deaths/100k\": 0.0, \"Recovered/100k\": 0.018122343943965717, \"Confirmed\": 225.0, \"Deaths\": 0.0, \"Recovered\": 1.0, \"Long\": 26.2746656, \"Lat\": 64.49884603, \"Region\": \"Europe\"}, {\"Country/Region\": \"France\", \"Confirmed/100k\": 6.687840449145809, \"Deaths/100k\": 0.13584675912327426, \"Recovered/100k\": 0.017913858345926282, \"Confirmed\": 4480.0, \"Deaths\": 91.0, \"Recovered\": 12.0, \"Long\": -2.76172945, \"Lat\": 42.17344011, \"Region\": \"Europe\"}, {\"Country/Region\": \"Germany\", \"Confirmed/100k\": 5.528897733624627, \"Deaths/100k\": 0.010852798168510723, \"Recovered/100k\": 0.055469857305721466, \"Confirmed\": 4585.0, \"Deaths\": 9.0, \"Recovered\": 46.0, \"Long\": 10.38578051, \"Lat\": 51.10698181, \"Region\": \"Europe\"}, {\"Country/Region\": \"Greece\", \"Confirmed/100k\": 2.1253454152384283, \"Deaths/100k\": 0.027965071253137214, \"Recovered/100k\": 0.07457352334169924, \"Confirmed\": 228.0, \"Deaths\": 3.0, \"Recovered\": 8.0, \"Long\": 22.95555794, \"Lat\": 39.07469623, \"Region\": \"Europe\"}, {\"Country/Region\": \"Iceland\", \"Confirmed/100k\": 44.1208912420031, \"Deaths/100k\": 0.0, \"Recovered/100k\": 0.28282622591027623, \"Confirmed\": 156.0, \"Deaths\": 0.0, \"Recovered\": 1.0, \"Long\": -18.57396167, \"Lat\": 64.99575386, \"Region\": \"Europe\"}, {\"Country/Region\": \"India\", \"Confirmed/100k\": 0.007540935480311991, \"Deaths/100k\": 0.00014786148000611743, \"Recovered/100k\": 0.00029572296001223485, \"Confirmed\": 102.0, \"Deaths\": 2.0, \"Recovered\": 4.0, \"Long\": 79.61197609999998, \"Lat\": 22.88578212, \"Region\": \"Asia\"}, {\"Country/Region\": \"Iran\", \"Confirmed/100k\": 15.561073521653087, \"Deaths/100k\": 0.7469413089582871, \"Recovered/100k\": 3.6173475175246668, \"Confirmed\": 12729.0, \"Deaths\": 611.0, \"Recovered\": 2959.0, \"Long\": 54.27407004, \"Lat\": 32.57503292, \"Region\": \"Asia\"}, {\"Country/Region\": \"Iraq\", \"Confirmed/100k\": 0.2862079014195912, \"Deaths/100k\": 0.026018900129053748, \"Recovered/100k\": 0.06764914033553975, \"Confirmed\": 110.0, \"Deaths\": 10.0, \"Recovered\": 26.0, \"Long\": 43.74353149, \"Lat\": 33.03970582, \"Region\": \"Asia\"}, {\"Country/Region\": \"Ireland\", \"Confirmed/100k\": 2.657872474042476, \"Deaths/100k\": 0.04120732517895311, \"Recovered/100k\": 0.0, \"Confirmed\": 129.0, \"Deaths\": 2.0, \"Recovered\": 0.0, \"Long\": -8.13793569, \"Lat\": 53.17544870000001, \"Region\": \"Europe\"}, {\"Country/Region\": \"Israel\", \"Confirmed/100k\": 2.1724937526734056, \"Deaths/100k\": 0.0, \"Recovered/100k\": 0.045025777257479915, \"Confirmed\": 193.0, \"Deaths\": 0.0, \"Recovered\": 4.0, \"Long\": 35.00444693, \"Lat\": 31.46110101, \"Region\": \"Asia\"}, {\"Country/Region\": \"Italy\", \"Confirmed/100k\": 35.0100129431308, \"Deaths/100k\": 2.3845265704519294, \"Recovered/100k\": 3.25328191360756, \"Confirmed\": 21157.0, \"Deaths\": 1441.0, \"Recovered\": 1966.0, \"Long\": 12.07001339, \"Lat\": 42.79662641, \"Region\": \"Europe\"}, {\"Country/Region\": \"Japan\", \"Confirmed/100k\": 0.6109266563976192, \"Deaths/100k\": 0.017387304580527327, \"Recovered/100k\": 0.09325917911373748, \"Confirmed\": 773.0, \"Deaths\": 22.0, \"Recovered\": 118.0, \"Long\": 138.03089558, \"Lat\": 37.59230135, \"Region\": \"Asia\"}, {\"Country/Region\": \"Korea, South\", \"Confirmed/100k\": 15.659842956913007, \"Deaths/100k\": 0.13943961079615835, \"Recovered/100k\": 0.9876972431394551, \"Confirmed\": 8086.0, \"Deaths\": 72.0, \"Recovered\": 510.0, \"Long\": 127.83916086, \"Lat\": 36.38523983, \"Region\": \"Asia\"}, {\"Country/Region\": \"Kuwait\", \"Confirmed/100k\": 2.513711206970521, \"Deaths/100k\": 0.0, \"Recovered/100k\": 0.1208515003351212, \"Confirmed\": 104.0, \"Deaths\": 0.0, \"Recovered\": 5.0, \"Long\": 47.58700459, \"Lat\": 29.33431262, \"Region\": \"Asia\"}, {\"Country/Region\": \"Malaysia\", \"Confirmed/100k\": 0.7548705404952363, \"Deaths/100k\": 0.0, \"Recovered/100k\": 0.11101037360224064, \"Confirmed\": 238.0, \"Deaths\": 0.0, \"Recovered\": 35.0, \"Long\": 109.69762284, \"Lat\": 3.78986846, \"Region\": \"Asia\"}, {\"Country/Region\": \"Netherlands\", \"Confirmed/100k\": 5.565544970444868, \"Deaths/100k\": 0.06964185573027988, \"Recovered/100k\": 0.011606975955046644, \"Confirmed\": 959.0, \"Deaths\": 12.0, \"Recovered\": 2.0, \"Long\": 5.28144793, \"Lat\": 52.1007899, \"Region\": \"Europe\"}, {\"Country/Region\": \"Norway\", \"Confirmed/100k\": 20.510558609767997, \"Deaths/100k\": 0.056451078742480724, \"Recovered/100k\": 0.018817026247493568, \"Confirmed\": 1090.0, \"Deaths\": 3.0, \"Recovered\": 1.0, \"Long\": 15.34834656, \"Lat\": 68.75015572, \"Region\": \"Europe\"}, {\"Country/Region\": \"Philippines\", \"Confirmed/100k\": 0.10407688667814162, \"Deaths/100k\": 0.007501036877703902, \"Recovered/100k\": 0.0018752592194259754, \"Confirmed\": 111.0, \"Deaths\": 8.0, \"Recovered\": 2.0, \"Long\": 122.88393253, \"Lat\": 11.77536778, \"Region\": \"Asia\"}, {\"Country/Region\": \"Poland\", \"Confirmed/100k\": 0.2712057343529827, \"Deaths/100k\": 0.007899196146203378, \"Recovered/100k\": 0.0, \"Confirmed\": 103.0, \"Deaths\": 3.0, \"Recovered\": 0.0, \"Long\": 19.39012835, \"Lat\": 52.12759564, \"Region\": \"Europe\"}, {\"Country/Region\": \"Portugal\", \"Confirmed/100k\": 1.6436871423399997, \"Deaths/100k\": 0.0, \"Recovered/100k\": 0.01945191884426035, \"Confirmed\": 169.0, \"Deaths\": 0.0, \"Recovered\": 2.0, \"Long\": -8.50104361, \"Lat\": 39.59550671, \"Region\": \"Europe\"}, {\"Country/Region\": \"Qatar\", \"Confirmed/100k\": 12.114993940705553, \"Deaths/100k\": 0.0, \"Recovered/100k\": 0.14379814766416085, \"Confirmed\": 337.0, \"Deaths\": 0.0, \"Recovered\": 4.0, \"Long\": 51.18479632, \"Lat\": 25.30601188, \"Region\": \"Asia\"}, {\"Country/Region\": \"Romania\", \"Confirmed/100k\": 0.6316134550303544, \"Deaths/100k\": 0.0, \"Recovered/100k\": 0.046215618660757636, \"Confirmed\": 123.0, \"Deaths\": 0.0, \"Recovered\": 9.0, \"Long\": 24.97293039, \"Lat\": 45.85243127, \"Region\": \"Europe\"}, {\"Country/Region\": \"Saudi Arabia\", \"Confirmed/100k\": 0.30563846287354696, \"Deaths/100k\": 0.0, \"Recovered/100k\": 0.0029673637172189025, \"Confirmed\": 103.0, \"Deaths\": 0.0, \"Recovered\": 1.0, \"Long\": 44.53686271, \"Lat\": 24.12245841, \"Region\": \"Asia\"}, {\"Country/Region\": \"Singapore\", \"Confirmed/100k\": 3.7597478557022965, \"Deaths/100k\": 0.0, \"Recovered/100k\": 1.8621392681544395, \"Confirmed\": 212.0, \"Deaths\": 0.0, \"Recovered\": 105.0, \"Long\": 103.81725592, \"Lat\": 1.35876087, \"Region\": \"Asia\"}, {\"Country/Region\": \"Slovenia\", \"Confirmed/100k\": 8.755076493248433, \"Deaths/100k\": 0.04837058836048858, \"Recovered/100k\": 0.0, \"Confirmed\": 181.0, \"Deaths\": 1.0, \"Recovered\": 0.0, \"Long\": 14.80444238, \"Lat\": 46.11554772, \"Region\": \"Europe\"}, {\"Country/Region\": \"Spain\", \"Confirmed/100k\": 13.678268839257742, \"Deaths/100k\": 0.4173466474190673, \"Recovered/100k\": 1.1065036754649118, \"Confirmed\": 6391.0, \"Deaths\": 195.0, \"Recovered\": 517.0, \"Long\": -3.64755047, \"Lat\": 40.24448698, \"Region\": \"Europe\"}, {\"Country/Region\": \"Sweden\", \"Confirmed/100k\": 9.437135274607376, \"Deaths/100k\": 0.019640239905530446, \"Recovered/100k\": 0.009820119952765223, \"Confirmed\": 961.0, \"Deaths\": 2.0, \"Recovered\": 1.0, \"Long\": 16.74558049, \"Lat\": 62.77966519, \"Region\": \"Europe\"}, {\"Country/Region\": \"Switzerland\", \"Confirmed/100k\": 15.957178869407455, \"Deaths/100k\": 0.15264409514517804, \"Recovered/100k\": 0.04696741389082401, \"Confirmed\": 1359.0, \"Deaths\": 13.0, \"Recovered\": 4.0, \"Long\": 8.20867471, \"Lat\": 46.79785878, \"Region\": \"Europe\"}, {\"Country/Region\": \"US\", \"Confirmed/100k\": 0.8335181673369116, \"Deaths/100k\": 0.01650531024429528, \"Recovered/100k\": 0.0036678467209545055, \"Confirmed\": 2727.0, \"Deaths\": 54.0, \"Recovered\": 12.0, \"Long\": -112.4616737, \"Lat\": 45.6795472, \"Region\": \"Americas\"}, {\"Country/Region\": \"United Kingdom\", \"Confirmed/100k\": 1.719081584498703, \"Deaths/100k\": 0.031584176093152026, \"Recovered/100k\": 0.028576159322375637, \"Confirmed\": 1143.0, \"Deaths\": 21.0, \"Recovered\": 19.0, \"Long\": -2.86563164, \"Lat\": 54.12387156, \"Region\": \"Europe\"}]}}, {\"mode\": \"vega-lite\"});\n",
+ "</script>"
+ ],
+ "text/plain": [
+ "alt.LayerChart(...)"
+ ]
+ },
+ "metadata": {},
+ "output_type": "display_data"
+ },
+ {
+ "data": {
+ "text/html": [
+ "\n",
+ "<p style=\"font-size: smaller\">Data Sources: \n",
+ " <a href=\"https://github.com/CSSEGISandData/COVID-19\">JHU CSSE</a>,\n",
+ " <a href=\"https://data.worldbank.org/indicator/SP.POP.TOTL\">World Bank</a>,\n",
+ " <a href=\"https://worldmap.harvard.edu/data/geonode:country_centroids_az8\">Harvard Worldmap</a>\n",
+ "</p>"
+ ],
+ "text/plain": [
+ "<IPython.core.display.HTML object>"
+ ]
+ },
+ "metadata": {},
+ "output_type": "display_data"
+ }
+ ],
"source": [
"display(map_of_variable(map_df, 'Confirmed/100k', 'Confirmed'))\n",
"display(HTML('''\n",
@@ -225,9 +314,85 @@
},
{
"cell_type": "code",
- "execution_count": null,
+ "execution_count": 21,
"metadata": {},
- "outputs": [],
+ "outputs": [
+ {
+ "data": {
+ "text/html": [
+ "\n",
+ "<div id=\"altair-viz-ac88b911e4bd44ccb5c59bbecb99bf89\"></div>\n",
+ "<script type=\"text/javascript\">\n",
+ " (function(spec, embedOpt){\n",
+ " const outputDiv = document.getElementById(\"altair-viz-ac88b911e4bd44ccb5c59bbecb99bf89\");\n",
+ " const paths = {\n",
+ " \"vega\": \"https://cdn.jsdelivr.net/npm//vega@5?noext\",\n",
+ " \"vega-lib\": \"https://cdn.jsdelivr.net/npm//vega-lib?noext\",\n",
+ " \"vega-lite\": \"https://cdn.jsdelivr.net/npm//vega-lite@4.0.2?noext\",\n",
+ " \"vega-embed\": \"https://cdn.jsdelivr.net/npm//vega-embed@6?noext\",\n",
+ " };\n",
+ "\n",
+ " function loadScript(lib) {\n",
+ " return new Promise(function(resolve, reject) {\n",
+ " var s = document.createElement('script');\n",
+ " s.src = paths[lib];\n",
+ " s.async = true;\n",
+ " s.onload = () => resolve(paths[lib]);\n",
+ " s.onerror = () => reject(`Error loading script: ${paths[lib]}`);\n",
+ " document.getElementsByTagName(\"head\")[0].appendChild(s);\n",
+ " });\n",
+ " }\n",
+ "\n",
+ " function showError(err) {\n",
+ " outputDiv.innerHTML = `<div class=\"error\" style=\"color:red;\">${err}</div>`;\n",
+ " throw err;\n",
+ " }\n",
+ "\n",
+ " function displayChart(vegaEmbed) {\n",
+ " vegaEmbed(outputDiv, spec, embedOpt)\n",
+ " .catch(err => showError(`Javascript Error: ${err.message}<br>This usually means there's a typo in your chart specification. See the javascript console for the full traceback.`));\n",
+ " }\n",
+ "\n",
+ " if(typeof define === \"function\" && define.amd) {\n",
+ " requirejs.config({paths});\n",
+ " require([\"vega-embed\"], displayChart, err => showError(`Error loading script: ${err.message}`));\n",
+ " } else if (typeof vegaEmbed === \"function\") {\n",
+ " displayChart(vegaEmbed);\n",
+ " } else {\n",
+ " loadScript(\"vega\")\n",
+ " .then(() => loadScript(\"vega-lite\"))\n",
+ " .then(() => loadScript(\"vega-embed\"))\n",
+ " .catch(showError)\n",
+ " .then(() => displayChart(vegaEmbed));\n",
+ " }\n",
+ " })({\"config\": {\"view\": {\"continuousWidth\": 400, \"continuousHeight\": 300}}, \"layer\": [{\"mark\": \"bar\", \"encoding\": {\"tooltip\": [{\"type\": \"nominal\", \"field\": \"Country/Region\"}, {\"type\": \"quantitative\", \"field\": \"Confirmed\"}, {\"type\": \"quantitative\", \"field\": \"Deaths\"}, {\"type\": \"quantitative\", \"field\": \"Recovered\"}, {\"type\": \"quantitative\", \"field\": \"Confirmed/100k\"}, {\"type\": \"quantitative\", \"field\": \"Deaths/100k\"}, {\"type\": \"quantitative\", \"field\": \"Recovered/100k\"}], \"x\": {\"type\": \"quantitative\", \"field\": \"Confirmed/100k\"}, \"y\": {\"type\": \"nominal\", \"field\": \"Country/Region\", \"sort\": \"-x\"}}}, {\"mark\": {\"type\": \"text\", \"align\": \"left\", \"baseline\": \"middle\", \"dx\": 3}, \"encoding\": {\"text\": {\"type\": \"quantitative\", \"field\": \"Confirmed/100k\", \"format\": \".3\"}, \"tooltip\": [{\"type\": \"nominal\", \"field\": \"Country/Region\"}, {\"type\": \"quantitative\", \"field\": \"Confirmed\"}, {\"type\": \"quantitative\", \"field\": \"Deaths\"}, {\"type\": \"quantitative\", \"field\": \"Recovered\"}, {\"type\": \"quantitative\", \"field\": \"Confirmed/100k\"}, {\"type\": \"quantitative\", \"field\": \"Deaths/100k\"}, {\"type\": \"quantitative\", \"field\": \"Recovered/100k\"}], \"x\": {\"type\": \"quantitative\", \"field\": \"Confirmed/100k\"}, \"y\": {\"type\": \"nominal\", \"field\": \"Country/Region\", \"sort\": \"-x\"}}}], \"data\": {\"name\": \"data-78f0aee81c818a7c0bb35bad1a0ca406\"}, \"height\": 900, \"title\": \"Confirmed cases per 100k inhabitants\", \"$schema\": \"https://vega.github.io/schema/vega-lite/v4.0.2.json\", \"datasets\": {\"data-78f0aee81c818a7c0bb35bad1a0ca406\": [{\"Country/Region\": \"Australia\", \"Confirmed/100k\": 1.000305333199906, \"Deaths/100k\": 0.012003663998398872, \"Recovered/100k\": 0.09202809065439137, \"Confirmed\": 250.0, \"Deaths\": 3.0, \"Recovered\": 23.0, \"Long\": 134.49100008, \"Lat\": -25.73288704, \"Region\": \"Oceania\"}, {\"Country/Region\": \"Austria\", \"Confirmed/100k\": 7.403608688423027, \"Deaths/100k\": 0.01130321937163821, \"Recovered/100k\": 0.06781931622982926, \"Confirmed\": 655.0, \"Deaths\": 1.0, \"Recovered\": 6.0, \"Long\": 14.1264761, \"Lat\": 47.58549439, \"Region\": \"Europe\"}, {\"Country/Region\": \"Bahrain\", \"Confirmed/100k\": 13.380577391029535, \"Deaths/100k\": 0.0, \"Recovered/100k\": 2.8035495485966644, \"Confirmed\": 210.0, \"Deaths\": 0.0, \"Recovered\": 44.0, \"Long\": 50.54196932, \"Lat\": 26.04205135, \"Region\": \"Asia\"}, {\"Country/Region\": \"Belgium\", \"Confirmed/100k\": 6.0321826135162215, \"Deaths/100k\": 0.035019928090079665, \"Recovered/100k\": 0.008754982022519914, \"Confirmed\": 689.0, \"Deaths\": 4.0, \"Recovered\": 1.0, \"Long\": 4.64065114, \"Lat\": 50.63981576, \"Region\": \"Europe\"}, {\"Country/Region\": \"Brazil\", \"Confirmed/100k\": 0.07208692453324421, \"Deaths/100k\": 0.0, \"Recovered/100k\": 0.0, \"Confirmed\": 151.0, \"Deaths\": 0.0, \"Recovered\": 0.0, \"Long\": -53.09783113, \"Lat\": -10.78777702, \"Region\": \"Americas\"}, {\"Country/Region\": \"Canada\", \"Confirmed/100k\": 0.53428524615007, \"Deaths/100k\": 0.002698410334091263, \"Recovered/100k\": 0.021587282672730104, \"Confirmed\": 198.0, \"Deaths\": 1.0, \"Recovered\": 8.0, \"Long\": -98.30777028, \"Lat\": 61.36206324, \"Region\": \"Americas\"}, {\"Country/Region\": \"China\", \"Confirmed/100k\": 5.814264071284455, \"Deaths/100k\": 0.2292619531423894, \"Recovered/100k\": 4.7144816296051655, \"Confirmed\": 80977.0, \"Deaths\": 3193.0, \"Recovered\": 65660.0, \"Long\": 103.81907349, \"Lat\": 36.56176546, \"Region\": \"Asia\"}, {\"Country/Region\": \"Czechia\", \"Confirmed/100k\": 1.7787071810361583, \"Deaths/100k\": 0.0, \"Recovered/100k\": 0.0, \"Confirmed\": 189.0, \"Deaths\": 0.0, \"Recovered\": 0.0, \"Long\": 15.31240163, \"Lat\": 49.73341233, \"Region\": \"Europe\"}, {\"Country/Region\": \"Denmark\", \"Confirmed/100k\": 14.420142938804432, \"Deaths/100k\": 0.01724897480718234, \"Recovered/100k\": 0.01724897480718234, \"Confirmed\": 836.0, \"Deaths\": 1.0, \"Recovered\": 1.0, \"Long\": 10.02800992, \"Lat\": 55.98125296, \"Region\": \"Europe\"}, {\"Country/Region\": \"Egypt\", \"Confirmed/100k\": 0.11074580236578434, \"Deaths/100k\": 0.002032033070931823, \"Recovered/100k\": 0.02743244645757961, \"Confirmed\": 109.0, \"Deaths\": 2.0, \"Recovered\": 27.0, \"Long\": 29.86190099, \"Lat\": 26.49593311, \"Region\": \"Africa\"}, {\"Country/Region\": \"Estonia\", \"Confirmed/100k\": 8.706290635665205, \"Deaths/100k\": 0.0, \"Recovered/100k\": 0.0, \"Confirmed\": 115.0, \"Deaths\": 0.0, \"Recovered\": 0.0, \"Long\": 25.54248537, \"Lat\": 58.67192972, \"Region\": \"Europe\"}, {\"Country/Region\": \"Finland\", \"Confirmed/100k\": 4.077527387392285, \"Deaths/100k\": 0.0, \"Recovered/100k\": 0.018122343943965717, \"Confirmed\": 225.0, \"Deaths\": 0.0, \"Recovered\": 1.0, \"Long\": 26.2746656, \"Lat\": 64.49884603, \"Region\": \"Europe\"}, {\"Country/Region\": \"France\", \"Confirmed/100k\": 6.687840449145809, \"Deaths/100k\": 0.13584675912327426, \"Recovered/100k\": 0.017913858345926282, \"Confirmed\": 4480.0, \"Deaths\": 91.0, \"Recovered\": 12.0, \"Long\": -2.76172945, \"Lat\": 42.17344011, \"Region\": \"Europe\"}, {\"Country/Region\": \"Germany\", \"Confirmed/100k\": 5.528897733624627, \"Deaths/100k\": 0.010852798168510723, \"Recovered/100k\": 0.055469857305721466, \"Confirmed\": 4585.0, \"Deaths\": 9.0, \"Recovered\": 46.0, \"Long\": 10.38578051, \"Lat\": 51.10698181, \"Region\": \"Europe\"}, {\"Country/Region\": \"Greece\", \"Confirmed/100k\": 2.1253454152384283, \"Deaths/100k\": 0.027965071253137214, \"Recovered/100k\": 0.07457352334169924, \"Confirmed\": 228.0, \"Deaths\": 3.0, \"Recovered\": 8.0, \"Long\": 22.95555794, \"Lat\": 39.07469623, \"Region\": \"Europe\"}, {\"Country/Region\": \"Iceland\", \"Confirmed/100k\": 44.1208912420031, \"Deaths/100k\": 0.0, \"Recovered/100k\": 0.28282622591027623, \"Confirmed\": 156.0, \"Deaths\": 0.0, \"Recovered\": 1.0, \"Long\": -18.57396167, \"Lat\": 64.99575386, \"Region\": \"Europe\"}, {\"Country/Region\": \"India\", \"Confirmed/100k\": 0.007540935480311991, \"Deaths/100k\": 0.00014786148000611743, \"Recovered/100k\": 0.00029572296001223485, \"Confirmed\": 102.0, \"Deaths\": 2.0, \"Recovered\": 4.0, \"Long\": 79.61197609999998, \"Lat\": 22.88578212, \"Region\": \"Asia\"}, {\"Country/Region\": \"Iran\", \"Confirmed/100k\": 15.561073521653087, \"Deaths/100k\": 0.7469413089582871, \"Recovered/100k\": 3.6173475175246668, \"Confirmed\": 12729.0, \"Deaths\": 611.0, \"Recovered\": 2959.0, \"Long\": 54.27407004, \"Lat\": 32.57503292, \"Region\": \"Asia\"}, {\"Country/Region\": \"Iraq\", \"Confirmed/100k\": 0.2862079014195912, \"Deaths/100k\": 0.026018900129053748, \"Recovered/100k\": 0.06764914033553975, \"Confirmed\": 110.0, \"Deaths\": 10.0, \"Recovered\": 26.0, \"Long\": 43.74353149, \"Lat\": 33.03970582, \"Region\": \"Asia\"}, {\"Country/Region\": \"Ireland\", \"Confirmed/100k\": 2.657872474042476, \"Deaths/100k\": 0.04120732517895311, \"Recovered/100k\": 0.0, \"Confirmed\": 129.0, \"Deaths\": 2.0, \"Recovered\": 0.0, \"Long\": -8.13793569, \"Lat\": 53.17544870000001, \"Region\": \"Europe\"}, {\"Country/Region\": \"Israel\", \"Confirmed/100k\": 2.1724937526734056, \"Deaths/100k\": 0.0, \"Recovered/100k\": 0.045025777257479915, \"Confirmed\": 193.0, \"Deaths\": 0.0, \"Recovered\": 4.0, \"Long\": 35.00444693, \"Lat\": 31.46110101, \"Region\": \"Asia\"}, {\"Country/Region\": \"Italy\", \"Confirmed/100k\": 35.0100129431308, \"Deaths/100k\": 2.3845265704519294, \"Recovered/100k\": 3.25328191360756, \"Confirmed\": 21157.0, \"Deaths\": 1441.0, \"Recovered\": 1966.0, \"Long\": 12.07001339, \"Lat\": 42.79662641, \"Region\": \"Europe\"}, {\"Country/Region\": \"Japan\", \"Confirmed/100k\": 0.6109266563976192, \"Deaths/100k\": 0.017387304580527327, \"Recovered/100k\": 0.09325917911373748, \"Confirmed\": 773.0, \"Deaths\": 22.0, \"Recovered\": 118.0, \"Long\": 138.03089558, \"Lat\": 37.59230135, \"Region\": \"Asia\"}, {\"Country/Region\": \"Korea, South\", \"Confirmed/100k\": 15.659842956913007, \"Deaths/100k\": 0.13943961079615835, \"Recovered/100k\": 0.9876972431394551, \"Confirmed\": 8086.0, \"Deaths\": 72.0, \"Recovered\": 510.0, \"Long\": 127.83916086, \"Lat\": 36.38523983, \"Region\": \"Asia\"}, {\"Country/Region\": \"Kuwait\", \"Confirmed/100k\": 2.513711206970521, \"Deaths/100k\": 0.0, \"Recovered/100k\": 0.1208515003351212, \"Confirmed\": 104.0, \"Deaths\": 0.0, \"Recovered\": 5.0, \"Long\": 47.58700459, \"Lat\": 29.33431262, \"Region\": \"Asia\"}, {\"Country/Region\": \"Malaysia\", \"Confirmed/100k\": 0.7548705404952363, \"Deaths/100k\": 0.0, \"Recovered/100k\": 0.11101037360224064, \"Confirmed\": 238.0, \"Deaths\": 0.0, \"Recovered\": 35.0, \"Long\": 109.69762284, \"Lat\": 3.78986846, \"Region\": \"Asia\"}, {\"Country/Region\": \"Netherlands\", \"Confirmed/100k\": 5.565544970444868, \"Deaths/100k\": 0.06964185573027988, \"Recovered/100k\": 0.011606975955046644, \"Confirmed\": 959.0, \"Deaths\": 12.0, \"Recovered\": 2.0, \"Long\": 5.28144793, \"Lat\": 52.1007899, \"Region\": \"Europe\"}, {\"Country/Region\": \"Norway\", \"Confirmed/100k\": 20.510558609767997, \"Deaths/100k\": 0.056451078742480724, \"Recovered/100k\": 0.018817026247493568, \"Confirmed\": 1090.0, \"Deaths\": 3.0, \"Recovered\": 1.0, \"Long\": 15.34834656, \"Lat\": 68.75015572, \"Region\": \"Europe\"}, {\"Country/Region\": \"Philippines\", \"Confirmed/100k\": 0.10407688667814162, \"Deaths/100k\": 0.007501036877703902, \"Recovered/100k\": 0.0018752592194259754, \"Confirmed\": 111.0, \"Deaths\": 8.0, \"Recovered\": 2.0, \"Long\": 122.88393253, \"Lat\": 11.77536778, \"Region\": \"Asia\"}, {\"Country/Region\": \"Poland\", \"Confirmed/100k\": 0.2712057343529827, \"Deaths/100k\": 0.007899196146203378, \"Recovered/100k\": 0.0, \"Confirmed\": 103.0, \"Deaths\": 3.0, \"Recovered\": 0.0, \"Long\": 19.39012835, \"Lat\": 52.12759564, \"Region\": \"Europe\"}, {\"Country/Region\": \"Portugal\", \"Confirmed/100k\": 1.6436871423399997, \"Deaths/100k\": 0.0, \"Recovered/100k\": 0.01945191884426035, \"Confirmed\": 169.0, \"Deaths\": 0.0, \"Recovered\": 2.0, \"Long\": -8.50104361, \"Lat\": 39.59550671, \"Region\": \"Europe\"}, {\"Country/Region\": \"Qatar\", \"Confirmed/100k\": 12.114993940705553, \"Deaths/100k\": 0.0, \"Recovered/100k\": 0.14379814766416085, \"Confirmed\": 337.0, \"Deaths\": 0.0, \"Recovered\": 4.0, \"Long\": 51.18479632, \"Lat\": 25.30601188, \"Region\": \"Asia\"}, {\"Country/Region\": \"Romania\", \"Confirmed/100k\": 0.6316134550303544, \"Deaths/100k\": 0.0, \"Recovered/100k\": 0.046215618660757636, \"Confirmed\": 123.0, \"Deaths\": 0.0, \"Recovered\": 9.0, \"Long\": 24.97293039, \"Lat\": 45.85243127, \"Region\": \"Europe\"}, {\"Country/Region\": \"Saudi Arabia\", \"Confirmed/100k\": 0.30563846287354696, \"Deaths/100k\": 0.0, \"Recovered/100k\": 0.0029673637172189025, \"Confirmed\": 103.0, \"Deaths\": 0.0, \"Recovered\": 1.0, \"Long\": 44.53686271, \"Lat\": 24.12245841, \"Region\": \"Asia\"}, {\"Country/Region\": \"Singapore\", \"Confirmed/100k\": 3.7597478557022965, \"Deaths/100k\": 0.0, \"Recovered/100k\": 1.8621392681544395, \"Confirmed\": 212.0, \"Deaths\": 0.0, \"Recovered\": 105.0, \"Long\": 103.81725592, \"Lat\": 1.35876087, \"Region\": \"Asia\"}, {\"Country/Region\": \"Slovenia\", \"Confirmed/100k\": 8.755076493248433, \"Deaths/100k\": 0.04837058836048858, \"Recovered/100k\": 0.0, \"Confirmed\": 181.0, \"Deaths\": 1.0, \"Recovered\": 0.0, \"Long\": 14.80444238, \"Lat\": 46.11554772, \"Region\": \"Europe\"}, {\"Country/Region\": \"Spain\", \"Confirmed/100k\": 13.678268839257742, \"Deaths/100k\": 0.4173466474190673, \"Recovered/100k\": 1.1065036754649118, \"Confirmed\": 6391.0, \"Deaths\": 195.0, \"Recovered\": 517.0, \"Long\": -3.64755047, \"Lat\": 40.24448698, \"Region\": \"Europe\"}, {\"Country/Region\": \"Sweden\", \"Confirmed/100k\": 9.437135274607376, \"Deaths/100k\": 0.019640239905530446, \"Recovered/100k\": 0.009820119952765223, \"Confirmed\": 961.0, \"Deaths\": 2.0, \"Recovered\": 1.0, \"Long\": 16.74558049, \"Lat\": 62.77966519, \"Region\": \"Europe\"}, {\"Country/Region\": \"Switzerland\", \"Confirmed/100k\": 15.957178869407455, \"Deaths/100k\": 0.15264409514517804, \"Recovered/100k\": 0.04696741389082401, \"Confirmed\": 1359.0, \"Deaths\": 13.0, \"Recovered\": 4.0, \"Long\": 8.20867471, \"Lat\": 46.79785878, \"Region\": \"Europe\"}, {\"Country/Region\": \"US\", \"Confirmed/100k\": 0.8335181673369116, \"Deaths/100k\": 0.01650531024429528, \"Recovered/100k\": 0.0036678467209545055, \"Confirmed\": 2727.0, \"Deaths\": 54.0, \"Recovered\": 12.0, \"Long\": -112.4616737, \"Lat\": 45.6795472, \"Region\": \"Americas\"}, {\"Country/Region\": \"United Kingdom\", \"Confirmed/100k\": 1.719081584498703, \"Deaths/100k\": 0.031584176093152026, \"Recovered/100k\": 0.028576159322375637, \"Confirmed\": 1143.0, \"Deaths\": 21.0, \"Recovered\": 19.0, \"Long\": -2.86563164, \"Lat\": 54.12387156, \"Region\": \"Europe\"}]}}, {\"mode\": \"vega-lite\"});\n",
+ "</script>"
+ ],
+ "text/plain": [
+ "alt.LayerChart(...)"
+ ]
+ },
+ "metadata": {},
+ "output_type": "display_data"
+ },
+ {
+ "data": {
+ "text/html": [
+ "\n",
+ "<p style=\"font-size: smaller\">Data Sources: \n",
+ " <a href=\"https://github.com/CSSEGISandData/COVID-19\">JHU CSSE</a>,\n",
+ " <a href=\"https://data.worldbank.org/indicator/SP.POP.TOTL\">World Bank</a>,\n",
+ " <a href=\"https://worldmap.harvard.edu/data/geonode:country_centroids_az8\">Harvard Worldmap</a>\n",
+ "</p>"
+ ],
+ "text/plain": [
+ "<IPython.core.display.HTML object>"
+ ]
+ },
+ "metadata": {},
+ "output_type": "display_data"
+ }
+ ],
"source": [
"bars = alt.Chart(map_df).mark_bar().encode(\n",
" x='Confirmed/100k:Q',\n",
@@ -245,8 +410,132 @@
" text=alt.Text('Confirmed/100k:Q', format=\".3\")\n",
")\n",
"\n",
- "(bars + text).properties(height=900)"
+ "chart = (bars + text).properties(height=900, title=f\"Confirmed cases per 100k inhabitants\")\n",
+ "display(chart)\n",
+ "display(HTML('''\n",
+ "<p style=\"font-size: smaller\">Data Sources: \n",
+ " <a href=\"https://github.com/CSSEGISandData/COVID-19\">JHU CSSE</a>,\n",
+ " <a href=\"https://data.worldbank.org/indicator/SP.POP.TOTL\">World Bank</a>,\n",
+ " <a href=\"https://worldmap.harvard.edu/data/geonode:country_centroids_az8\">Harvard Worldmap</a>\n",
+ "</p>'''))"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "## How have cases been growing?"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 124,
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "latest_confirmed_ser = rates_frames_map['confirmed'].iloc[:,-1]\n",
+ "countries_over_1 = latest_confirmed_ser[latest_confirmed_ser >= 2].reset_index()['Country/Region']\n",
+ "\n",
+ "confirmed_rate_df = rates_frames_map['confirmed']\n",
+ "confirmed_rate_df = confirmed_rate_df.loc[\n",
+ " confirmed_rate_df.index.isin(countries_over_1) &\n",
+ " confirmed_rate_df.index.isin(countries_over_thresh)]\n",
+ "confirmed_rate_df = confirmed_rate_df.join(\n",
+ " geodata_df[['Longitude', 'Latitude', 'region_un']]).set_index(\n",
+ " ['Longitude', 'Latitude', 'region_un'], append=True)\n",
+ "confirmed_rate_df = confirmed_rate_df.stack().reset_index()\n",
+ "confirmed_rate_df = confirmed_rate_df.rename(\n",
+ " {'region_un': 'Geo Region', 'level_4': 'Date', 0: 'Confirmed/100k'}, axis=1)\n",
+ "\n",
+ "latest_confirmed_ser = confirmed_rate_df.set_index(\n",
+ " ['Country/Region', 'Geo Region', 'Date']).drop(\n",
+ " ['Longitude', 'Latitude'], axis=1).unstack().iloc[:,-1]\n",
+ "sort_order = latest_confirmed_ser.groupby('Geo Region').mean().sort_values(ascending=False).index.tolist()"
]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 141,
+ "metadata": {},
+ "outputs": [
+ {
+ "data": {
+ "text/html": [
+ "\n",
+ "<div id=\"altair-viz-e14acdd4be3741398c2844640e4fcf16\"></div>\n",
+ "<script type=\"text/javascript\">\n",
+ " (function(spec, embedOpt){\n",
+ " const outputDiv = document.getElementById(\"altair-viz-e14acdd4be3741398c2844640e4fcf16\");\n",
+ " const paths = {\n",
+ " \"vega\": \"https://cdn.jsdelivr.net/npm//vega@5?noext\",\n",
+ " \"vega-lib\": \"https://cdn.jsdelivr.net/npm//vega-lib?noext\",\n",
+ " \"vega-lite\": \"https://cdn.jsdelivr.net/npm//vega-lite@4.0.2?noext\",\n",
+ " \"vega-embed\": \"https://cdn.jsdelivr.net/npm//vega-embed@6?noext\",\n",
+ " };\n",
+ "\n",
+ " function loadScript(lib) {\n",
+ " return new Promise(function(resolve, reject) {\n",
+ " var s = document.createElement('script');\n",
+ " s.src = paths[lib];\n",
+ " s.async = true;\n",
+ " s.onload = () => resolve(paths[lib]);\n",
+ " s.onerror = () => reject(`Error loading script: ${paths[lib]}`);\n",
+ " document.getElementsByTagName(\"head\")[0].appendChild(s);\n",
+ " });\n",
+ " }\n",
+ "\n",
+ " function showError(err) {\n",
+ " outputDiv.innerHTML = `<div class=\"error\" style=\"color:red;\">${err}</div>`;\n",
+ " throw err;\n",
+ " }\n",
+ "\n",
+ " function displayChart(vegaEmbed) {\n",
+ " vegaEmbed(outputDiv, spec, embedOpt)\n",
+ " .catch(err => showError(`Javascript Error: ${err.message}<br>This usually means there's a typo in your chart specification. See the javascript console for the full traceback.`));\n",
+ " }\n",
+ "\n",
+ " if(typeof define === \"function\" && define.amd) {\n",
+ " requirejs.config({paths});\n",
+ " require([\"vega-embed\"], displayChart, err => showError(`Error loading script: ${err.message}`));\n",
+ " } else if (typeof vegaEmbed === \"function\") {\n",
+ " displayChart(vegaEmbed);\n",
+ " } else {\n",
+ " loadScript(\"vega\")\n",
+ " .then(() => loadScript(\"vega-lite\"))\n",
+ " .then(() => loadScript(\"vega-embed\"))\n",
+ " .catch(showError)\n",
+ " .then(() => displayChart(vegaEmbed));\n",
+ " }\n",
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\"Date\": \"2020-02-16T00:00:00\", \"Confirmed/100k\": 0.009820119952765223}, {\"Country/Region\": \"Sweden\", \"Longitude\": 16.74558049, \"Latitude\": 62.77966519, \"Geo Region\": \"Europe\", \"Date\": \"2020-02-17T00:00:00\", \"Confirmed/100k\": 0.009820119952765223}, {\"Country/Region\": \"Sweden\", \"Longitude\": 16.74558049, \"Latitude\": 62.77966519, \"Geo Region\": \"Europe\", \"Date\": \"2020-02-18T00:00:00\", \"Confirmed/100k\": 0.009820119952765223}, {\"Country/Region\": \"Sweden\", \"Longitude\": 16.74558049, \"Latitude\": 62.77966519, \"Geo Region\": \"Europe\", \"Date\": \"2020-02-19T00:00:00\", \"Confirmed/100k\": 0.009820119952765223}, {\"Country/Region\": \"Sweden\", \"Longitude\": 16.74558049, \"Latitude\": 62.77966519, \"Geo Region\": \"Europe\", \"Date\": \"2020-02-20T00:00:00\", \"Confirmed/100k\": 0.009820119952765223}, {\"Country/Region\": \"Sweden\", \"Longitude\": 16.74558049, \"Latitude\": 62.77966519, \"Geo Region\": \"Europe\", \"Date\": 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\"Confirmed/100k\": 0.019640239905530446}, {\"Country/Region\": \"Sweden\", \"Longitude\": 16.74558049, \"Latitude\": 62.77966519, \"Geo Region\": \"Europe\", \"Date\": \"2020-02-27T00:00:00\", \"Confirmed/100k\": 0.06874083966935657}, {\"Country/Region\": \"Sweden\", \"Longitude\": 16.74558049, \"Latitude\": 62.77966519, \"Geo Region\": \"Europe\", \"Date\": \"2020-02-28T00:00:00\", \"Confirmed/100k\": 0.06874083966935657}, {\"Country/Region\": \"Sweden\", \"Longitude\": 16.74558049, \"Latitude\": 62.77966519, \"Geo Region\": \"Europe\", \"Date\": \"2020-02-29T00:00:00\", \"Confirmed/100k\": 0.11784143943318268}, {\"Country/Region\": \"Sweden\", \"Longitude\": 16.74558049, \"Latitude\": 62.77966519, \"Geo Region\": \"Europe\", \"Date\": \"2020-03-01T00:00:00\", \"Confirmed/100k\": 0.13748167933871314}, {\"Country/Region\": \"Sweden\", \"Longitude\": 16.74558049, \"Latitude\": 62.77966519, \"Geo Region\": \"Europe\", \"Date\": \"2020-03-02T00:00:00\", \"Confirmed/100k\": 0.14730179929147835}, {\"Country/Region\": \"Sweden\", \"Longitude\": 16.74558049, \"Latitude\": 62.77966519, \"Geo Region\": \"Europe\", \"Date\": \"2020-03-03T00:00:00\", \"Confirmed/100k\": 0.20622251900806968}, {\"Country/Region\": \"Sweden\", \"Longitude\": 16.74558049, \"Latitude\": 62.77966519, \"Geo Region\": \"Europe\", \"Date\": \"2020-03-04T00:00:00\", \"Confirmed/100k\": 0.3437041983467828}, {\"Country/Region\": \"Sweden\", \"Longitude\": 16.74558049, \"Latitude\": 62.77966519, \"Geo Region\": \"Europe\", \"Date\": \"2020-03-05T00:00:00\", \"Confirmed/100k\": 0.923091275559931}, {\"Country/Region\": \"Sweden\", \"Longitude\": 16.74558049, \"Latitude\": 62.77966519, \"Geo Region\": \"Europe\", \"Date\": \"2020-03-06T00:00:00\", \"Confirmed/100k\": 0.9918321152292876}, {\"Country/Region\": \"Sweden\", \"Longitude\": 16.74558049, \"Latitude\": 62.77966519, \"Geo Region\": \"Europe\", \"Date\": \"2020-03-07T00:00:00\", \"Confirmed/100k\": 1.581039312395201}, {\"Country/Region\": \"Sweden\", \"Longitude\": 16.74558049, \"Latitude\": 62.77966519, \"Geo Region\": \"Europe\", \"Date\": \"2020-03-08T00:00:00\", \"Confirmed/100k\": 1.99348435041134}, {\"Country/Region\": \"Sweden\", \"Longitude\": 16.74558049, \"Latitude\": 62.77966519, \"Geo Region\": \"Europe\", \"Date\": \"2020-03-09T00:00:00\", \"Confirmed/100k\": 2.435389748285776}, {\"Country/Region\": \"Sweden\", \"Longitude\": 16.74558049, \"Latitude\": 62.77966519, \"Geo Region\": \"Europe\", \"Date\": \"2020-03-10T00:00:00\", \"Confirmed/100k\": 3.4861425832316537}, {\"Country/Region\": \"Sweden\", \"Longitude\": 16.74558049, \"Latitude\": 62.77966519, \"Geo Region\": \"Europe\", \"Date\": \"2020-03-11T00:00:00\", \"Confirmed/100k\": 4.9100599763826125}, {\"Country/Region\": \"Sweden\", \"Longitude\": 16.74558049, \"Latitude\": 62.77966519, \"Geo Region\": \"Europe\", \"Date\": \"2020-03-12T00:00:00\", \"Confirmed/100k\": 5.882251851706369}, {\"Country/Region\": \"Sweden\", \"Longitude\": 16.74558049, \"Latitude\": 62.77966519, \"Geo Region\": \"Europe\", \"Date\": \"2020-03-13T00:00:00\", \"Confirmed/100k\": 7.993577641550892}, {\"Country/Region\": \"Sweden\", \"Longitude\": 16.74558049, \"Latitude\": 62.77966519, \"Geo Region\": \"Europe\", \"Date\": \"2020-03-14T00:00:00\", \"Confirmed/100k\": 9.437135274607376}, {\"Country/Region\": \"Switzerland\", \"Longitude\": 8.20867471, \"Latitude\": 46.79785878, \"Geo Region\": \"Europe\", \"Date\": \"2020-01-22T00:00:00\", \"Confirmed/100k\": 0.0}, {\"Country/Region\": \"Switzerland\", \"Longitude\": 8.20867471, \"Latitude\": 46.79785878, \"Geo Region\": \"Europe\", \"Date\": \"2020-01-23T00:00:00\", \"Confirmed/100k\": 0.0}, {\"Country/Region\": \"Switzerland\", \"Longitude\": 8.20867471, \"Latitude\": 46.79785878, \"Geo Region\": \"Europe\", \"Date\": \"2020-01-24T00:00:00\", \"Confirmed/100k\": 0.0}, {\"Country/Region\": \"Switzerland\", \"Longitude\": 8.20867471, \"Latitude\": 46.79785878, \"Geo Region\": \"Europe\", \"Date\": \"2020-01-25T00:00:00\", \"Confirmed/100k\": 0.0}, {\"Country/Region\": \"Switzerland\", \"Longitude\": 8.20867471, \"Latitude\": 46.79785878, \"Geo Region\": \"Europe\", \"Date\": \"2020-01-26T00:00:00\", \"Confirmed/100k\": 0.0}, {\"Country/Region\": \"Switzerland\", \"Longitude\": 8.20867471, \"Latitude\": 46.79785878, \"Geo Region\": \"Europe\", \"Date\": \"2020-01-27T00:00:00\", \"Confirmed/100k\": 0.0}, {\"Country/Region\": \"Switzerland\", \"Longitude\": 8.20867471, \"Latitude\": 46.79785878, \"Geo Region\": \"Europe\", \"Date\": \"2020-01-28T00:00:00\", \"Confirmed/100k\": 0.0}, {\"Country/Region\": \"Switzerland\", \"Longitude\": 8.20867471, \"Latitude\": 46.79785878, \"Geo Region\": \"Europe\", \"Date\": \"2020-01-29T00:00:00\", \"Confirmed/100k\": 0.0}, {\"Country/Region\": \"Switzerland\", \"Longitude\": 8.20867471, \"Latitude\": 46.79785878, \"Geo Region\": \"Europe\", \"Date\": \"2020-01-30T00:00:00\", \"Confirmed/100k\": 0.0}, {\"Country/Region\": \"Switzerland\", \"Longitude\": 8.20867471, \"Latitude\": 46.79785878, \"Geo Region\": \"Europe\", \"Date\": \"2020-01-31T00:00:00\", \"Confirmed/100k\": 0.0}, {\"Country/Region\": \"Switzerland\", \"Longitude\": 8.20867471, \"Latitude\": 46.79785878, \"Geo Region\": \"Europe\", \"Date\": \"2020-02-01T00:00:00\", \"Confirmed/100k\": 0.0}, {\"Country/Region\": \"Switzerland\", \"Longitude\": 8.20867471, \"Latitude\": 46.79785878, \"Geo Region\": \"Europe\", \"Date\": \"2020-02-02T00:00:00\", \"Confirmed/100k\": 0.0}, {\"Country/Region\": \"Switzerland\", \"Longitude\": 8.20867471, \"Latitude\": 46.79785878, \"Geo Region\": \"Europe\", \"Date\": \"2020-02-03T00:00:00\", \"Confirmed/100k\": 0.0}, {\"Country/Region\": \"Switzerland\", \"Longitude\": 8.20867471, \"Latitude\": 46.79785878, \"Geo Region\": \"Europe\", \"Date\": \"2020-02-04T00:00:00\", \"Confirmed/100k\": 0.0}, {\"Country/Region\": \"Switzerland\", \"Longitude\": 8.20867471, \"Latitude\": 46.79785878, \"Geo Region\": \"Europe\", \"Date\": \"2020-02-05T00:00:00\", \"Confirmed/100k\": 0.0}, {\"Country/Region\": \"Switzerland\", \"Longitude\": 8.20867471, \"Latitude\": 46.79785878, \"Geo Region\": \"Europe\", \"Date\": \"2020-02-06T00:00:00\", \"Confirmed/100k\": 0.0}, {\"Country/Region\": \"Switzerland\", \"Longitude\": 8.20867471, \"Latitude\": 46.79785878, \"Geo Region\": \"Europe\", \"Date\": \"2020-02-07T00:00:00\", \"Confirmed/100k\": 0.0}, {\"Country/Region\": \"Switzerland\", \"Longitude\": 8.20867471, \"Latitude\": 46.79785878, \"Geo Region\": \"Europe\", \"Date\": \"2020-02-08T00:00:00\", \"Confirmed/100k\": 0.0}, {\"Country/Region\": \"Switzerland\", \"Longitude\": 8.20867471, \"Latitude\": 46.79785878, \"Geo Region\": \"Europe\", \"Date\": \"2020-02-09T00:00:00\", \"Confirmed/100k\": 0.0}, {\"Country/Region\": \"Switzerland\", \"Longitude\": 8.20867471, \"Latitude\": 46.79785878, \"Geo Region\": \"Europe\", \"Date\": \"2020-02-10T00:00:00\", \"Confirmed/100k\": 0.0}, {\"Country/Region\": \"Switzerland\", \"Longitude\": 8.20867471, \"Latitude\": 46.79785878, \"Geo Region\": \"Europe\", \"Date\": \"2020-02-11T00:00:00\", \"Confirmed/100k\": 0.0}, {\"Country/Region\": \"Switzerland\", \"Longitude\": 8.20867471, \"Latitude\": 46.79785878, \"Geo Region\": \"Europe\", \"Date\": \"2020-02-12T00:00:00\", \"Confirmed/100k\": 0.0}, {\"Country/Region\": \"Switzerland\", \"Longitude\": 8.20867471, \"Latitude\": 46.79785878, \"Geo Region\": \"Europe\", \"Date\": \"2020-02-13T00:00:00\", \"Confirmed/100k\": 0.0}, {\"Country/Region\": \"Switzerland\", \"Longitude\": 8.20867471, \"Latitude\": 46.79785878, \"Geo Region\": \"Europe\", \"Date\": \"2020-02-14T00:00:00\", \"Confirmed/100k\": 0.0}, {\"Country/Region\": \"Switzerland\", \"Longitude\": 8.20867471, \"Latitude\": 46.79785878, \"Geo Region\": \"Europe\", \"Date\": \"2020-02-15T00:00:00\", \"Confirmed/100k\": 0.0}, {\"Country/Region\": \"Switzerland\", \"Longitude\": 8.20867471, \"Latitude\": 46.79785878, \"Geo Region\": \"Europe\", \"Date\": \"2020-02-16T00:00:00\", \"Confirmed/100k\": 0.0}, {\"Country/Region\": \"Switzerland\", \"Longitude\": 8.20867471, \"Latitude\": 46.79785878, \"Geo Region\": \"Europe\", \"Date\": \"2020-02-17T00:00:00\", \"Confirmed/100k\": 0.0}, {\"Country/Region\": \"Switzerland\", \"Longitude\": 8.20867471, \"Latitude\": 46.79785878, \"Geo Region\": \"Europe\", \"Date\": \"2020-02-18T00:00:00\", \"Confirmed/100k\": 0.0}, {\"Country/Region\": \"Switzerland\", \"Longitude\": 8.20867471, \"Latitude\": 46.79785878, \"Geo Region\": \"Europe\", \"Date\": \"2020-02-19T00:00:00\", \"Confirmed/100k\": 0.0}, {\"Country/Region\": \"Switzerland\", \"Longitude\": 8.20867471, \"Latitude\": 46.79785878, \"Geo Region\": \"Europe\", \"Date\": \"2020-02-20T00:00:00\", \"Confirmed/100k\": 0.0}, {\"Country/Region\": \"Switzerland\", \"Longitude\": 8.20867471, \"Latitude\": 46.79785878, \"Geo Region\": \"Europe\", \"Date\": \"2020-02-21T00:00:00\", \"Confirmed/100k\": 0.0}, {\"Country/Region\": \"Switzerland\", \"Longitude\": 8.20867471, \"Latitude\": 46.79785878, \"Geo Region\": \"Europe\", \"Date\": \"2020-02-22T00:00:00\", \"Confirmed/100k\": 0.0}, {\"Country/Region\": \"Switzerland\", \"Longitude\": 8.20867471, \"Latitude\": 46.79785878, \"Geo Region\": \"Europe\", \"Date\": \"2020-02-23T00:00:00\", \"Confirmed/100k\": 0.0}, {\"Country/Region\": \"Switzerland\", \"Longitude\": 8.20867471, \"Latitude\": 46.79785878, \"Geo Region\": \"Europe\", \"Date\": \"2020-02-24T00:00:00\", \"Confirmed/100k\": 0.0}, {\"Country/Region\": \"Switzerland\", \"Longitude\": 8.20867471, \"Latitude\": 46.79785878, \"Geo Region\": \"Europe\", \"Date\": \"2020-02-25T00:00:00\", \"Confirmed/100k\": 0.011741853472706005}, {\"Country/Region\": \"Switzerland\", \"Longitude\": 8.20867471, \"Latitude\": 46.79785878, \"Geo Region\": \"Europe\", \"Date\": \"2020-02-26T00:00:00\", \"Confirmed/100k\": 0.011741853472706005}, {\"Country/Region\": \"Switzerland\", \"Longitude\": 8.20867471, \"Latitude\": 46.79785878, \"Geo Region\": \"Europe\", \"Date\": \"2020-02-27T00:00:00\", \"Confirmed/100k\": 0.09393482778164802}, {\"Country/Region\": \"Switzerland\", \"Longitude\": 8.20867471, \"Latitude\": 46.79785878, \"Geo Region\": \"Europe\", \"Date\": \"2020-02-28T00:00:00\", \"Confirmed/100k\": 0.09393482778164802}, {\"Country/Region\": \"Switzerland\", \"Longitude\": 8.20867471, \"Latitude\": 46.79785878, \"Geo Region\": \"Europe\", \"Date\": \"2020-02-29T00:00:00\", \"Confirmed/100k\": 0.21135336250870806}, {\"Country/Region\": \"Switzerland\", \"Longitude\": 8.20867471, \"Latitude\": 46.79785878, \"Geo Region\": \"Europe\", \"Date\": \"2020-03-01T00:00:00\", \"Confirmed/100k\": 0.3170300437630621}, {\"Country/Region\": \"Switzerland\", \"Longitude\": 8.20867471, \"Latitude\": 46.79785878, \"Geo Region\": \"Europe\", \"Date\": \"2020-03-02T00:00:00\", \"Confirmed/100k\": 0.4931578458536522}, {\"Country/Region\": \"Switzerland\", \"Longitude\": 8.20867471, \"Latitude\": 46.79785878, \"Geo Region\": \"Europe\", \"Date\": \"2020-03-03T00:00:00\", \"Confirmed/100k\": 0.6575437944715362}, {\"Country/Region\": \"Switzerland\", \"Longitude\": 8.20867471, \"Latitude\": 46.79785878, \"Geo Region\": \"Europe\", \"Date\": \"2020-03-04T00:00:00\", \"Confirmed/100k\": 1.0567668125435403}, {\"Country/Region\": \"Switzerland\", \"Longitude\": 8.20867471, \"Latitude\": 46.79785878, \"Geo Region\": \"Europe\", \"Date\": \"2020-03-05T00:00:00\", \"Confirmed/100k\": 1.3385712958884843}, {\"Country/Region\": \"Switzerland\", \"Longitude\": 8.20867471, \"Latitude\": 46.79785878, \"Geo Region\": \"Europe\", \"Date\": \"2020-03-06T00:00:00\", \"Confirmed/100k\": 2.5127566431590846}, {\"Country/Region\": \"Switzerland\", \"Longitude\": 8.20867471, \"Latitude\": 46.79785878, \"Geo Region\": \"Europe\", \"Date\": \"2020-03-07T00:00:00\", \"Confirmed/100k\": 3.1468167306852086}, {\"Country/Region\": \"Switzerland\", \"Longitude\": 8.20867471, \"Latitude\": 46.79785878, \"Geo Region\": \"Europe\", \"Date\": \"2020-03-08T00:00:00\", \"Confirmed/100k\": 3.957004620301923}, {\"Country/Region\": \"Switzerland\", \"Longitude\": 8.20867471, \"Latitude\": 46.79785878, \"Geo Region\": \"Europe\", \"Date\": \"2020-03-09T00:00:00\", \"Confirmed/100k\": 4.391453198792045}, {\"Country/Region\": \"Switzerland\", \"Longitude\": 8.20867471, \"Latitude\": 46.79785878, \"Geo Region\": \"Europe\", \"Date\": \"2020-03-10T00:00:00\", \"Confirmed/100k\": 5.7652500550986465}, {\"Country/Region\": \"Switzerland\", \"Longitude\": 8.20867471, \"Latitude\": 46.79785878, \"Geo Region\": \"Europe\", \"Date\": \"2020-03-11T00:00:00\", \"Confirmed/100k\": 7.655688464204314}, {\"Country/Region\": \"Switzerland\", \"Longitude\": 8.20867471, \"Latitude\": 46.79785878, \"Geo Region\": \"Europe\", \"Date\": \"2020-03-12T00:00:00\", \"Confirmed/100k\": 7.655688464204314}, {\"Country/Region\": \"Switzerland\", \"Longitude\": 8.20867471, \"Latitude\": 46.79785878, \"Geo Region\": \"Europe\", \"Date\": \"2020-03-13T00:00:00\", \"Confirmed/100k\": 13.373971105412135}, {\"Country/Region\": \"Switzerland\", \"Longitude\": 8.20867471, \"Latitude\": 46.79785878, \"Geo Region\": \"Europe\", \"Date\": \"2020-03-14T00:00:00\", \"Confirmed/100k\": 15.957178869407455}]}}, {\"mode\": \"vega-lite\"});\n",
+ "</script>"
+ ],
+ "text/plain": [
+ "alt.Chart(...)"
+ ]
+ },
+ "execution_count": 141,
+ "metadata": {},
+ "output_type": "execute_result"
+ }
+ ],
+ "source": [
+ "base = alt.Chart(confirmed_rate_df).properties(width=300, height=200, title=\"Countries with 2 or more cases per 100k\")\n",
+ "line = base.mark_line().encode(\n",
+ " x='Date',\n",
+ " y='Confirmed/100k',\n",
+ " color='Country/Region',\n",
+ " facet=alt.Facet('Geo Region:N', columns=1, sort=alt.SortArray(sort_order), title='Geographic Region'),\n",
+ " tooltip=[\"Country/Region:N\", \"Date:T\", \"Confirmed/100k:Q\"]\n",
+ ")\n",
+ "line"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": null,
+ "metadata": {},
+ "outputs": [],
+ "source": []
}
],
"metadata": {